Affinage

STX4

Syntaxin-4 · UniProt Q12846

Length
297 aa
Mass
34.2 kDa
Annotated
2026-06-10
11 papers in source corpus 8 papers cited in narrative 8 extracted findings
Cross-family judge vs UniProt: Affinage preferred faithfulness: 6/6 claims corpus-supported (100%)

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

STX4 is a plasma-membrane t-SNARE that assembles into SNARE complexes with SNAP23 and cognate R-SNAREs to drive regulated vesicle fusion across multiple secretory and exocytic contexts (PMID:21586284, PMID:18439908). In macrophages it partners with VAMP3 and SNAP23 to mediate polarised exocytosis of recycling-endosome membrane, organising podosome superstructures and supporting adhesion, spreading, and persistent migration (PMID:21586284). In insulin-responsive cells its engagement of VAMP2 is gated by Synip, which binds STX4 outside its N-terminal 1–28 residues and blocks VAMP2 association until insulin triggers Synip dissociation, licensing SNARE assembly and GLUT4 vesicle fusion (PMID:18439908). STX4 is also required for VAMP2+ vesicle docking at the cardiomyocyte sarcolemma and for L-type Ca2+ channel modulation, and the human STX4 R240W variant behaves as a hypomorphic allele causing cardiac electrical and morphological defects in a zebrafish model (PMID:35599850). Beyond the plasma membrane, STX4 localises to the outer mitochondrial membrane in skeletal muscle, where it binds Drp1 and promotes AMPK-mediated phosphorylation of Drp1 at S637 to favour mitochondrial fusion and prevent diet-induced mitochondrial fragmentation and insulin resistance (PMID:35058456); inducible muscle-specific loss of STX4 impairs mitochondrial biogenesis and mitophagy, establishing a role in mitochondrial quality control distinct from its SNARE function (PMID:41214862). STX4 contributes selectively to membrane-fusion pathways: it is dispensable for Sec22b-dependent ER-to-endosome fusion during APC cross-presentation (PMID:37638825).

Mechanistic history

Synthesis pass · year-by-year structured walk · 8 steps
  1. 2008 Medium

    Established how STX4 availability for SNARE assembly is regulated, showing that Synip gates VAMP2 access to STX4 and that insulin relieves this block to permit GLUT4 vesicle fusion.

    Evidence in vitro co-expression/co-purification of a 1:1 complex with N-terminal deletion mapping of Stx4

    PMID:18439908

    Open questions at the time
    • In vitro reconstitution from a single lab without cellular validation of the gating model
    • Structural basis of the Synip-binding region beyond exclusion of residues 1-28 not resolved
    • Does not address other regulated fusion contexts
  2. 2011 Medium

    Defined a complete plasma-membrane SNARE complex for STX4 and tied it to a discrete cellular process, demonstrating STX4/SNAP23/VAMP3 mediate recycling-endosome exocytosis for macrophage spreading and migration.

    Evidence siRNA knockdown of each SNARE component in macrophages with live imaging, podosome morphology, and fibronectin migration assays

    PMID:21586284

    Open questions at the time
    • Direct demonstration of the ternary complex in macrophages not shown biochemically
    • Recruitment mechanism to migration sites unknown
    • Single cell type
  3. 2022 High

    Revealed a non-canonical mitochondrial function for STX4, showing it localises to the outer mitochondrial membrane, binds Drp1, and drives AMPK-mediated Drp1-S637 phosphorylation to favour fusion and protect against metabolic dysfunction.

    Evidence EM localisation, reciprocal Co-IP, transgenic muscle-specific STX4 enrichment with HFD challenge, phospho-Drp1 S637 immunoblotting

    PMID:35058456

    Open questions at the time
    • Mechanism by which STX4 promotes AMPK activity on Drp1 not resolved
    • Whether SNARE function is involved in mitochondrial targeting unclear
    • Single tissue (skeletal muscle)
  4. 2022 Medium

    Linked STX4 to cardiac development and human disease, showing it is required for sarcolemmal VAMP2+ vesicle docking and L-type Ca2+ channel modulation and that the R240W variant is hypomorphic.

    Evidence CRISPR stx4 knockout zebrafish, live vesicle-docking imaging, optical cardiac mapping, pharmacological Ca2+ modulation, R241W transgenic overexpression

    PMID:35599850

    Open questions at the time
    • Molecular link between vesicle docking and Ca2+ channel modulation not defined
    • Human variant pathogenicity tested only in zebrafish surrogate
    • Cognate R-SNARE for cardiac fusion not confirmed beyond VAMP2 association
  5. 2023 Medium

    Delimited STX4's fusion repertoire, showing it is dispensable for Sec22b-dependent ER-to-endosome fusion during cytosolic-pathway cross-presentation in APCs.

    Evidence CRISPR/Cas9 Stx4 knockout in two murine APC lines with cross-presentation CTL assay

    PMID:37638825

    Open questions at the time
    • Negative result limited to the tested cross-presentation context
    • Possible redundancy with other syntaxins not excluded
    • Does not address other immune fusion events
  6. 2025 Medium

    Demonstrated STX4 is required for mitochondrial quality control, with inducible muscle-specific loss impairing both mitochondrial biogenesis and mitophagy.

    Evidence inducible skmSTX4-iKO mice and myotube siRNA, mt-Keima mitophagy biosensor, ETC immunoblotting, oxygen consumption, [U-13C]glucose tracing

    PMID:41214862

    Open questions at the time
    • Direct molecular role of STX4 in PINK1/PARKIN recruitment or PGC1-alpha regulation not established
    • Whether biogenesis and mitophagy defects are secondary to fission/fusion imbalance unclear
    • Single tissue
  7. 2025 Low

    Extended STX4's exocytic role to secretory autophagy, placing it as a plasma-membrane Q-SNARE with SNAP23 that fuses UBB+1-containing autophagosomes via the R-SNARE SEC22B.

    Evidence CRISPR/siRNA knockdown of STX4, SNAP23, SEC22B in cultured cells with UBB+1 secretion assay and co-localisation imaging (preprint)

    PMID:bio_10.1101_2024.12.31.630908

    Open questions at the time
    • Preprint with limited mechanistic detail; not peer-reviewed
    • Direct SNARE complex formation not demonstrated biochemically
    • Cargo selectivity for UBB+1 unexplained
  8. 2025 Low

    Associated STX4 with ovarian cancer cell behaviour, linking its silencing to reduced EMT and proliferation markers.

    Evidence lentiviral shRNA knockdown in SK-OV-3 and CAOV-3 cells, CCK-8/Transwell/scratch assays, EMT/MMP2/CCND1 immunoblotting, xenograft

    PMID:40483481

    Open questions at the time
    • Pathway placement inferred from marker levels without epistasis
    • Direct mechanistic link between SNARE function and EMT signalling not established
    • Single study

Open questions

Synthesis pass · forward-looking unresolved questions
  • How STX4 partitions between plasma-membrane SNARE assembly and outer-mitochondrial Drp1 regulation, and whether these functions share a common molecular determinant, remains unresolved.
  • Targeting signals directing STX4 to mitochondria versus plasma membrane unknown
  • No structural model unifying its SNARE and Drp1-regulatory activities
  • Whether mitochondrial functions require SNARE-domain interactions untested

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0005198 structural molecule activity 3 GO:0060090 molecular adaptor activity 2
Localization
GO:0005886 plasma membrane 4
Pathway
R-HSA-1852241 Organelle biogenesis and maintenance 2 R-HSA-5653656 Vesicle-mediated transport 2
Complex memberships
STX4/SNAP23/VAMP2 SNARE complexSTX4/SNAP23/VAMP3 SNARE complex

Evidence

Reading pass · 8 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2011 STX4 forms a SNARE complex with VAMP3 and SNAP23 at the plasma membrane that mediates polarised exocytosis of recycling endosome membrane during macrophage spreading and migration, and organises podosome superstructures; knockdown of any component disrupts adhesion, spreading, and persistent migration on fibronectin. siRNA knockdown of VAMP3/STX4/SNAP23 in macrophages with live-cell imaging, morphological analysis of podosomes, and migration assays on fibronectin Experimental cell research Medium 21586284
2008 STX4 directly binds Synip via a region outside the N-terminal 1–28 residues; this interaction prevents VAMP2 from engaging STX4 in the basal state, and insulin-induced dissociation of Synip from STX4 permits VAMP2-STX4 SNARE complex formation to drive GLUT4 vesicle fusion. Co-expression and co-purification using pGEX6p-1/pET28a(+) vectors; stoichiometric 1:1 complex isolated at ~95% purity; N-terminal deletion mapping of Stx4 Biochemical and biophysical research communications Medium 18439908
2022 STX4 localises at or proximal to the outer mitochondrial membrane in skeletal muscle (electron microscopy), physically interacts with Drp1 (co-IP), and promotes AMPK-mediated phosphorylation of Drp1 at S637 to favour mitochondrial fusion; transgenic skeletal-muscle-specific STX4 enrichment prevents high-fat-diet-induced mitochondrial fragmentation and dysfunction and reverses insulin resistance. Electron microscopy localisation, Co-IP (STX4–Drp1), transgenic skmSTX4tg mouse model with HFD challenge, phospho-Drp1 S637 immunoblotting Nature communications High 35058456
2022 STX4 is required for normal VAMP2+ vesicle docking to the cardiomyocyte sarcolemma and for L-type Ca2+ channel modulation in the embryonic heart; loss-of-function (CRISPR stx4 mutant zebrafish) causes bradycardia, linearised hearts, and ectopy, while the human disease variant STX4R240W (zebrafish R241W) acts as a hypomorphic allele. CRISPR/Cas9 stx4 knockout zebrafish, live imaging of VAMP2+ vesicle docking, optical mapping of cardiac electrical activity, pharmacological Ca2+ channel modulation, transgenic overexpression of STX4R241W HGG advances Medium 35599850
2025 STX4 (with SNAP23) acts as a Q-SNARE on the plasma membrane that mediates fusion of UBB+1-containing autophagosomes with the plasma membrane for secretory autophagy; SEC22B is the cognate R-SNARE on the autophagosome side, and disruption of STX4/SNAP23 reduces UBB+1 exocytosis. CRISPR/siRNA knockdown of STX4, SNAP23, and SEC22B in cultured cells; UBB+1 secretion assay; co-localisation imaging bioRxivpreprint Low bio_10.1101_2024.12.31.630908
2025 Inducible skeletal-muscle-specific STX4 knockout in mice impairs mitochondrial biogenesis (reduced PGC1-α, NRF1, Tfam expression and mitochondrial DNA levels) and mitophagy (reduced PINK1/PARKIN levels, impaired mitochondria-lysosome colocalization by mt-Keima), demonstrating that STX4 is required for mitochondrial quality control beyond its plasma membrane SNARE function. Inducible skmSTX4-iKO mice, siRNA knockdown in L6.GLUT4myc myotubes, mt-Keima live-cell mitophagy biosensor, ETC complex abundance immunoblotting, mitochondrial oxygen consumption rate, [U-13C]glucose isotope tracing Journal of cachexia, sarcopenia and muscle Medium 41214862
2023 STX4 knockout in murine APCs had very limited effect on cross-presentation of PLGA microsphere-encapsulated antigen or synthetic long peptide via the cytosolic pathway, suggesting that STX4 is NOT essential for Sec22b-dependent ER-to-endosome vesicle fusion in this context (negative finding). CRISPR/Cas9-generated Stx4 knockout in two murine APC lines; cross-presentation CTL assay Journal of immunology Medium 37638825
2025 STX4 silencing in ovarian cancer cell lines (SK-OV-3, CAOV-3) reduced E-cadherin levels, decreased MMP2 and CCND1 levels, and attenuated EMT, suggesting STX4 influences ovarian cancer cell proliferation and invasion through EMT/MMP2/CCND1 signalling. Lentiviral shRNA-mediated STX4 knockdown; CCK-8, Transwell, scratch assays; Western blotting for EMT/MMP/CCND1 markers; in vivo xenograft Journal of ovarian research Low 40483481

Source papers

Stage 0 corpus · 11 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2011 VAMP3 regulates podosome organisation in macrophages and together with Stx4/SNAP23 mediates adhesion, cell spreading and persistent migration. Experimental cell research 32 21586284
2022 Enrichment of the exocytosis protein STX4 in skeletal muscle remediates peripheral insulin resistance and alters mitochondrial dynamics via Drp1. Nature communications 23 35058456
2019 STX4 expression is associated with classification, clinical stage and lymphatic metastasis in ovarian cancer. Translational cancer research 7 35116778
2022 Stx4 is required to regulate cardiomyocyte Ca2+ handling during vertebrate cardiac development. HGG advances 5 35599850
2008 An efficient co-expression and purification system for the complex of Stx4 and C-terminal domain of Synip. Biochemical and biophysical research communications 5 18439908
2023 Sec22b and Stx4 Depletion Has No Major Effect on Cross-Presentation of PLGA Microsphere-Encapsulated Antigen and a Synthetic Long Peptide In Vitro. Journal of immunology (Baltimore, Md. : 1950) 4 37638825
2025 Silencing of STX4 inhibits the proliferation, migration and invasion of ovarian cancer cells via EMT/MMP2/ CCND1 signaling pathway. Journal of ovarian research 2 40483481
2025 A multi-omics and mediation-based genetic screening approach identifies STX4 as a key link between epigenetic regulation, immune cells, and childhood asthma. Clinical epigenetics 2 40514687
2025 STX4 Is Indispensable for Mitochondrial Homeostasis in Skeletal Muscle. Journal of cachexia, sarcopenia and muscle 2 41214862
2025 Clinicopathologic significance of FUT8, STX4, and calpain2 expression in ovarian cancer. American journal of translational research 0 39959200
2025 STX4 is indispensable for mitochondrial homeostasis in skeletal muscle. bioRxiv : the preprint server for biology 0 40949942

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