Affinage

STXBP3

Syntaxin-binding protein 3 · UniProt O00186

Length
592 aa
Mass
67.8 kDa
Annotated
2026-06-10
16 papers in source corpus 4 papers cited in narrative 4 extracted findings
Cross-family judge vs UniProt: Affinage preferred faithfulness: 3/3 claims corpus-supported (100%)

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

STXBP3 (Munc18c/MUNC18-3) is a syntaxin-binding protein that regulates intracellular vesicular trafficking and regulated exocytosis (PMID:18556422). In secretory enterochromaffin cells it controls vesicle docking and serotonin release, with loss of STXBP3 reducing 5-HT secretion (PMID:18556422), and in epithelial cells it is required for normal cell polarity, where reduced STXBP3 expression produces polarity defects (PMID:33891011). Although structurally related to MUNC18-1, STXBP3 lacks the hydrophobic β-sheet 10 residue corresponding to V263 and therefore cannot restore the submembrane F-actin network in Munc18-1-KO chromaffin cells; introducing a hydrophobic residue at that position confers F-actin regulatory activity, establishing that this residue governs F-actin organization independently of syntaxin1 targeting (PMID:31719162).

Mechanistic history

Synthesis pass · year-by-year structured walk · 4 steps
  1. 2008 Medium

    Established that STXBP3 acts in regulated secretion by controlling secretory vesicle docking/exocytosis, defining its functional role in a secretory cell type.

    Evidence Antisense knockdown in neoplastic enterochromaffin cells (KRJ-I) with serotonin secretion assay

    PMID:18556422

    Open questions at the time
    • Single method without reciprocal/biochemical validation of the docking step
    • Direct syntaxin partner in EC cells not identified
    • No structural basis for the docking activity established
  2. 2019 Medium

    Resolved why STXBP3 diverges functionally from MUNC18-1, mapping F-actin regulatory capacity to a single β-sheet 10 hydrophobic residue distinct from syntaxin targeting.

    Evidence Mutagenesis of STXBP3 expressed in Munc18-1-KO mouse chromaffin cells with F-actin network imaging

    PMID:31719162

    Open questions at the time
    • Physiological relevance of STXBP3 lacking native F-actin activity not addressed
    • Molecular mechanism linking the residue to F-actin remodeling not dissected
    • Endogenous role of this residue in STXBP3-expressing cell types unknown
  3. 2021 Medium

    Linked STXBP3 loss-of-function to epithelial cell polarity, extending its trafficking role beyond regulated secretion and connecting it to human disease variants.

    Evidence Whole exome/Sanger sequencing of variants, Western blot for protein stability, and siRNA knockdown in CaCo2 cells with cell polarity readout

    PMID:33891011

    Open questions at the time
    • Molecular pathway connecting STXBP3 to polarity machinery not defined
    • Causality of variants in patient phenotype not established by rescue
    • Trafficking cargo affected in epithelial cells not identified
  4. 2025 Low

    Implicated STXBP3 in SNARE-mediated membrane fusion underlying extracellular vesicle secretion, broadening its trafficking remit to EV biogenesis.

    Evidence Genome-wide CRISPR activation screen for CD63 surface levels with genomic activation/ablation and proteomics (preprint)

    PMID:bio_10.1101_2025.07.24.665424

    Open questions at the time
    • Mechanistic role of STXBP3 itself not directly dissected; identified as a screen collaborator
    • Single preprint, not peer-reviewed or independently confirmed
    • Direct interaction with MARCKSL1 or the SNARE machinery not validated biochemically

Open questions

Synthesis pass · forward-looking unresolved questions
  • How STXBP3 selects specific syntaxin partners and coordinates docking across distinct cell types (secretory, epithelial, EV-secreting) remains unresolved.
  • No defined syntaxin/SNARE binding partner identified in the timeline
  • No structural model of STXBP3-SNARE complexes
  • Unified mechanism reconciling secretion, polarity, and EV roles not established

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Localization
GO:0005886 plasma membrane 1
Pathway
R-HSA-5653656 Vesicle-mediated transport 1

Evidence

Reading pass · 4 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2021 Damaging heterozygous or biallelic variants in STXBP3 interfere with intron splicing or protein stability, leading to reduced STXBP3 protein expression. Knockdown of STXBP3 in CaCo2 epithelial cells resulted in defects in cell polarity, establishing a role for STXBP3 in intracellular vesicular trafficking and epithelial cell polarity. Whole exome sequencing, Sanger sequencing, Western blot (protein stability), siRNA knockdown in CaCo2 cells with cell polarity readout Journal of Crohn's & colitis Medium 33891011
2008 STXBP3 functions as a vesicle docking inhibitor in enterochromaffin (EC) cells; antisense knockdown of STXBP3 significantly reduced serotonin (5-HT) secretion, indicating STXBP3 regulates secretory vesicle docking/exocytosis in EC cells. Antisense knockdown of STXBP3 in neoplastic EC cells (KRJ-I) with 5-HT secretion assay American journal of physiology. Gastrointestinal and liver physiology Medium 18556422
2019 STXBP3 (MUNC18-3), unlike MUNC18-1, lacks a hydrophobic residue at the position corresponding to V263 in β-sheet 10 and therefore fails to restore a normal submembrane F-actin network in Munc18-1-KO chromaffin cells. Introduction of a hydrophobic residue at the corresponding position in STXBP3 rescued normal F-actin network organization, demonstrating that this residue governs F-actin regulation independently of syntaxin1 targeting. Mutagenesis of STXBP3, expression in Munc18-1-KO mouse chromaffin cells, F-actin network imaging Journal of cell science Medium 31719162
2025 In a genome-wide CRISPR activation screen, STXBP3 was identified as a SNARE-associated protein that collaborates with MARCKSL1 in regulating extracellular vesicle secretion at the plasma membrane, implicating STXBP3 in SNARE-mediated membrane fusion events relevant to EV biogenesis. Genome-wide CRISPR activation screen for CD63 surface levels, followed by genomic activation/ablation and proteomic approaches bioRxivpreprint Low bio_10.1101_2025.07.24.665424

Source papers

Stage 0 corpus · 16 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2008 Luminal regulation of normal and neoplastic human EC cell serotonin release is mediated by bile salts, amines, tastants, and olfactants. American journal of physiology. Gastrointestinal and liver physiology 192 18556422
2012 Analyzing microarray data of Alzheimer's using cluster analysis to identify the biomarker genes. International journal of Alzheimer's disease 46 22482075
2022 Genomic Diversity Profiling and Breed-Specific Evolutionary Signatures of Selection in Arunachali Yak. Genes 17 35205299
2011 Genes linked to energy metabolism and immunoregulatory mechanisms are associated with subcutaneous adipose tissue distribution in HIV-infected men. Pharmacogenetics and genomics 17 21897333
2013 Lipoprotein lipase in chronic lymphocytic leukaemia - strong biomarker with lack of functional significance. Leukemia research 15 23478142
2020 Genome-Wide Association Study and Fine Mapping Reveals Candidate Genes for Birth Weight of Yorkshire and Landrace Pigs. Frontiers in genetics 14 32292414
2021 Variants in STXBP3 are Associated with Very Early Onset Inflammatory Bowel Disease, Bilateral Sensorineural Hearing Loss and Immune Dysregulation. Journal of Crohn's & colitis 11 33891011
2014 Munc18c: a controversial regulator of peripheral insulin action. Trends in endocrinology and metabolism: TEM 11 25028245
2019 MUNC18-1 regulates the submembrane F-actin network, independently of syntaxin1 targeting, via hydrophobicity in β-sheet 10. Journal of cell science 6 31719162
2008 Genes that code for T cell signaling proteins establish transcriptional regulatory networks during thymus ontogeny. Molecular and cellular biochemistry 6 18597059
2023 Integrated omics analysis of coronary artery calcifications and myocardial infarction: the Framingham Heart Study. Scientific reports 4 38062110
2025 Multi-omics insights into functional alterations of the liver in growth-retarded offspring: transcriptomic, epigenetic and metabolomic profiles. BMC genomics 3 40764951
2022 STXBP3 and GOT2 predict immunological activity in acute allograft rejection. Frontiers in immunology 3 36532048
2025 Identify new pseudogene RPL7P1-oriented network as a drug target against infections pre-existing diabetes. Integrative biology : quantitative biosciences from nano to macro 1 40748624
2026 Remodeling of the circRNA Landscape in Myocardial Infarction Integrates Nuclear Regulation, DNA Damage Response, and Cardiomyocyte Structural Pathways. Biomolecules 0 42072699
2025 The mitochondrial hub gene UCHL1 May serve as a potential biomarker for diagnosing diabetic cardiomyopathy: a comprehensive integration of biological pathways. BMC medical genomics 0 40790764

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