| 2007 |
Top2 acts within a ~600 bp region spanning moving replication forks to counteract torsional stress; top2 single mutants accumulate sister chromatid junctions in S phase and activate the Rad53 checkpoint at M-G1 transition; top1 top2 double mutants exhibit fork block, DNA damage checkpoint activation, and chromosome breakage, showing coordinated action of Top1 and Top2 at replication forks. |
ChIP-on-chip mapping of Top1/Top2 on replicating yeast chromosomes; genetic analysis of top1, top2, and top1 top2 double mutants; checkpoint kinase (Rad53) phosphorylation assays; Exo1 epistasis experiments |
Genes & development |
High |
17671091
|
| 2006 |
Tyrosyl-DNA phosphodiesterase (Tdp1) participates in repair of Top2-mediated DNA damage: Tdp1 can remove a Top2-derived peptide covalently linked to DNA via a 5'-phosphotyrosyl bond in vitro; tdp1 deletion confers hypersensitivity to Top2-targeting drugs; Tdp1 acts in collaboration with NHEJ, excision repair, and post-replication repair pathways. |
Yeast genetic deletion analysis; in vitro biochemical assay with bacterially expressed Tdp1p acting on 5'-phosphotyrosyl-linked Top2 peptide-DNA substrate; drug sensitivity assays; double-mutant epistasis |
Proceedings of the National Academy of Sciences of the United States of America |
High |
16751265
|
| 2014 |
Irreversible Top2-DNA covalent complexes (Top2cc) require proteolytic processing (proteasomal degradation or denaturation) before TDP2 can remove the remaining 5'-phosphotyrosyl adduct; TDP2 is most active when the tyrosyl-linked DNA is single-stranded; TDP2 can also process tyrosine linked to RNA substrates. A 1.6 Å crystal structure of TDP2 bound to a 5'-ribonucleotide-bearing substrate explains RNA accommodation in the active site. |
In vitro TOP2cc processing assays with suicidal substrates; TDP2 enzymatic assays with varied substrates; crystal structure at 1.6 Å resolution; protease/denaturation pre-treatment experiments |
The Journal of biological chemistry |
High |
24808172
|
| 2009 |
Top2 binds intergenic regions near transcribed genes specifically in S phase; Top2-bound loci exhibit low nucleosome density; loss of Top2 causes γH2A accumulation at these loci; HMG protein Hmo1 co-occupies these loci and is deleterious in top2 mutants. Top2 is dispensable for transcription per se but suppresses chromosome fragility at M-G1 transition at transcription-associated loci. |
ChIP-chip mapping of Top2 and Hmo1 across yeast cell cycle; γH2A ChIP; genetic analysis of top2 and hmo1 mutants; nucleosome occupancy assays |
Cell |
High |
19737516
|
| 2009 |
Drug-poisoned TOP2α undergoes proteasomal degradation; the E3 ubiquitin ligase Bmi1/Ring1A ubiquitinates TOP2α in vitro and in cells; siRNA silencing of Bmi1 inhibits drug-induced TOP2α degradation and increases TOP2α-DNA cleavage complex persistence and drug efficacy. A small-molecule inhibitor of Bmi1/Ring1A ubiquitination activity prevents TOP2α ubiquitination and drug-induced degradation, synergistically enhancing TOP2 poison efficacy. |
siRNA screen identifying Bmi1/Ring1A; in vitro ubiquitination assay; cellular overexpression of Bmi1; drug sensitivity assays; small-molecule inhibitor of ubiquitin ligase |
PloS one |
High |
19956605
|
| 2015 |
TOP2 (but not TOP1) synergizes with BAF (mSWI/SNF) ATP-dependent chromatin remodeling complexes genome-wide to resolve facultative heterochromatin to accessible chromatin, independent of transcription; this indicates that DNA decatenation/catenation topology changes (not torsional swiveling) are required for heterochromatin resolution. TOP2 also plays a role in re-formation of facultative heterochromatin, suggesting heterochromatin and accessible chromatin differ in catenation states. |
Genome-wide ATAC-seq and chromatin accessibility assays; TOP2 and TOP1 inhibitor treatments; BAF complex genetic perturbations; in vivo chromatin remodeling assays |
Nature structural & molecular biology |
High |
28250416
|
| 2019 |
TOP2A cleavage activity in humans is distributed in two fractions: tightly localized CTCF-proximal sites and broadly distributed transcription-proximal sites (correlated with gene length and transcript abundance); single-nucleotide mapping distinguishes canonical DSB sites from strand-biased SSB-prone sites induced by etoposide; Mre11-dependent repair of Top2 breaks was characterized in yeast. |
Strand-specific nucleotide-resolution mapping of Top2 DNA cleavage (END-seq derivative) in S. cerevisiae and human genomes; comparison with ENCODE chromatin marks; etoposide treatment; meiotic Spo11 validation |
Nature communications |
High |
31649282
|
| 2020 |
Upon replication stress, TOP2A is recruited to stalled replication forks in a manner dependent on HLTF, ZRANB3, and SMARCAL1; TOP2A undergoes SUMOylation mediated by the SUMO E3 ligase ZATT; SUMOylated TOP2A then recruits the SUMO-targeted DNA translocase PICH; this ZATT-TOP2A-PICH axis drives extensive fork reversal by resolving topological barriers. Loss of this axis causes accumulation of partially reversed forks and genome instability. |
Co-immunoprecipitation; proximity ligation assays; siRNA knockdown of HLTF/ZRANB3/SMARCAL1/ZATT/PICH; fork reversal electron microscopy; SUMOylation assays; genome instability measurements |
Molecular cell |
High |
33296677
|
| 2011 |
HuR binds the TOP2A 3'-UTR and increases TOP2A translation; reducing HuR triggers recruitment of TOP2A mRNA to RISC components and cytoplasmic processing bodies; miR-548c-3p, identified by MS2-tagged RNA precipitation, mediates repression of TOP2A translation by antagonizing HuR; lowering TOP2A by HuR silencing or miR-548c-3p overexpression decreases DNA damage after doxorubicin treatment. |
RNA-binding protein immunoprecipitation; MS2-tagged RNA precipitation to identify miR-548c-3p; reporter assays; siRNA knockdown of HuR; miRNA overexpression; doxorubicin cytotoxicity assays |
Molecular and cellular biology |
High |
21768308
|
| 2015 |
PTEN physically associates with TOP2A and stabilizes it through the deubiquitinase OTUD3; in PTEN-deficient cells, TOP2A ubiquitination increases and TOP2A protein levels decrease, leading to defective DNA decatenation checkpoint in G2, accumulation of ultra-fine anaphase bridges, and incomplete DNA decatenation. |
Co-immunoprecipitation of PTEN and TOP2A; ubiquitination assays; OTUD3 knockdown; analysis of ultra-fine bridges; decatenation checkpoint assays in PTEN-null cells |
Scientific reports |
Medium |
26657567
|
| 2019 |
MDM4 and TOP2A physically bind each other; the C-terminal region (CTR) of TOP2A binds residues 188–238 of MDM4; this interaction stabilizes TOP2A protein post-translationally, and TOP2A binding activates MDM4 for p53 binding, resulting in enhanced p53 inhibition and increased cancer cell proliferation. |
Co-immunoprecipitation; domain-mapping experiments with truncation constructs; siRNA knockdown; cell proliferation assays; p53 activity assays |
Molecular oncology |
Medium |
30672125
|
| 2017 |
TOP2 activity and transcription both contribute to DNA double-strand break formation after G4 ligand (pyridostatin and CX-5461) treatment; TOP2A was identified as a major effector of cytotoxicity by an unbiased genetic approach; TOP1 counteracts clastogenic activity of G4 ligands by limiting co-transcriptional G4 formation. |
Unbiased genetic screen; TOP2 inhibitor treatments; transcription inhibitor experiments; DSB detection assays |
eLife |
High |
34180392
|
| 2017 |
TOP2A DNA cleavage in human cells is enriched at highly transcribed loci and genes involved in TOP2 poison-related leukemic translocations; TOP2A cleavage cluster regions (CCRs) occur in introns and lincRNA loci and are biased toward distal gene bodies; TOP2 poisons cause a proximal shift in CCR distribution; cleavage correlates independently with both gene length and transcript abundance. |
High-throughput sequencing of TOP2A cleavage sites at single-base precision in K562 cells; comparison with ENCODE data for transcription and open chromatin marks; etoposide and other TOP2 poison treatments |
Genome research |
High |
28385713
|
| 2016 |
Sister chromatid intertwines (SCIs/catenanes) are formed independently of DNA replication during G2/M by Top2-dependent concatenation of cohesed chromatids due to physical proximity; condensin provides a bias in Top2 function toward decatenation at anaphase onset, as SCI removal in anaphase requires condensin and coincides with hyperactivation of condensin DNA supercoiling activity. |
Yeast genetic analysis; 2D gel electrophoresis for SCI detection; condensin and Top2 conditional mutants; cell cycle staging |
Molecular cell |
High |
27716481
|
| 2015 |
Condensin relocalization from centromeres to chromosome arms during anaphase requires Polo kinase activity and is followed by Top2 recruitment to chromosome arms in a condensin-dependent manner; this Top2 recruitment coincides with condensin's DNA overwinding activity and promotes chromosome segregation. |
ChIP-seq of condensin and Top2 through the cell cycle; conditional Polo kinase inhibition; yeast cell biology with live imaging |
Cell reports |
Medium |
26686624
|
| 2011 |
In fission yeast, Top2 is required continuously throughout mitosis including telophase for mitotic chromosome structure; condensin and Top2 have distinct requirements during mitosis—condensin SMC2 mutants accumulate telomeric DNA in lumps at telophase, whereas Top2 mutants show distinct chromosome segregation defects. |
Temperature-shift experiments with top2 temperature-sensitive and nda3 cold-sensitive double mutants; cell cycle staging; genetic epistasis |
Journal of cell science |
Medium |
21540296
|
| 1996 |
Human TOP2α and TOP2β can each functionally substitute for yeast Top2 in chromosome segregation, vegetative growth, meiosis, and suppression of rDNA hyper-recombination, demonstrating that isozyme-specific roles of TOP2α in human cells depend on factors extrinsic to catalytic activity. |
Complementation of yeast top2 temperature-sensitive and disruption mutants with human TOP2α and TOP2β expression constructs; spore viability; rDNA recombination assays |
Molecular & general genetics : MGG |
High |
8804406
|
| 1993 |
The top2-5 yeast mutant carrying clustered amino acid substitutions encodes a TOP2 enzyme with reduced amsacrine-stabilized and etoposide-stabilized cleavage in vitro; the mutations identify a domain of the topoisomerase II protein important for interaction with anti-TOP2 anticancer drugs. |
Purification of recombinant top2-5 protein; in vitro DNA cleavage assays with amsacrine and etoposide; sequencing of the top2-5 allele; yeast drug sensitivity assays |
The Journal of biological chemistry |
High |
8395511
|
| 1995 |
Ser741 of yeast Top2 (homologous to Ser83 of E. coli GyrA) is near a binding site for both quinolone and etoposide; the Ser741→Trp mutation confers quinolone resistance and etoposide hypersensitivity by forming a more stable ternary etoposide-DNA-enzyme complex that is not readily reversible by heat. |
Site-directed mutagenesis; purification of mutant Top2 proteins; in vitro DNA cleavage assays with etoposide and quinolone CP-115,953; drug sensitivity assays in yeast |
The Journal of biological chemistry |
High |
7657608
|
| 2008 |
Top2 mutants at Pro473 and Gly737 exhibit hypersensitivity to mAMSA; Pro473→Leu generates elevated Top2-mediated single-strand breaks but not double-strand breaks in vitro, and expression of an allele that can only generate single-strand breaks confers mAMSA hypersensitivity in yeast, demonstrating that Top2-generated single-strand breaks can be a component of cell killing. |
Mutagenesis screen; purification of mutant Top2 proteins; in vitro DSB and SSB cleavage assays; allele-specific expression in yeast; drug sensitivity assays |
The Journal of biological chemistry |
High |
18723844
|
| 2018 |
A C-terminally truncated 90-kDa isoform of TOP2α (TOP2α/90), product of intron-19-retaining mRNA, heterodimerizes with full-length TOP2α/170; forced expression of TOP2α/90 in K562 cells suppresses etoposide-mediated DNA strand breaks and cytotoxicity, while siRNA knockdown of TOP2α/90 in resistant cells enhances etoposide-induced DSBs, establishing a dominant-negative mechanism of chemoresistance through heterodimerization. |
Co-immunoprecipitation of endogenous TOP2α/90 and TOP2α/170; forced expression and siRNA knockdown; DNA strand break assays; clonogenic survival assays; qPCR and immunoblotting |
Molecular pharmacology |
High |
29514855
|
| 2020 |
Anthracyclines (doxorubicin, epirubicin) and mitoxantrone act as TOP2 poisons at low concentrations but attenuate TOP2-DNA covalent complex formation at higher concentrations, effectively becoming TOP2 inhibitors; TOP2B is the only TOP2 isoform present in iPSC-derived human cardiomyocytes, and doxorubicin does not detectably induce TOP2-DNA complexes in these cells, suggesting inhibition (not poisoning) of TOP2B may underlie cardiotoxicity. |
TOP2-DNA complex immunoassays in cells; in vitro DNA cleavage assays with doxorubicin, epirubicin, mitoxantrone, etoposide; iPSC-derived cardiomyocyte immunofluorescence; isoform-specific antibodies |
Molecular pharmacology |
High |
31399497
|
| 2017 |
Fission yeast Rrp2, an Snf2-family SUMO-targeted DNA translocase, prevents excessive SUMOylation-dependent ubiquitination and proteasomal degradation of Top2; loss of Rrp2 increases Top2 degradation and exposes concealed DNA breaks at Top2-DNA complex sites; Rrp2 competes with the STUbL for SUMO chain binding and displaces SUMOylated Top2 from DNA. The budding yeast homolog Uls1 plays a similar role. |
Genome-wide CRISPR/deletion screen; Top2 SUMOylation and ubiquitination assays; Top2 protein stability measurements; DNA damage assays; biochemical SUMO-binding studies |
Molecular cell |
High |
28552615
|
| 2021 |
VCP/p97 AAA ATPase is required for proteasomal degradation of etoposide-induced TOP2A- and TOP2B-DNA covalent complexes; VCP/p97 inhibition leads to prolonged accumulation of TOP2-DNA complexes in a manner epistatic with the proteasomal pathway and reduces etoposide-induced γH2AX phosphorylation, indicating fewer DSBs are exposed. |
TARDIS assay for TOP2-DNA complex quantification; VCP/p97 pharmacological inhibition; epistasis with proteasome inhibitors; γH2AX immunofluorescence |
Molecular pharmacology |
Medium |
33941661
|
| 2020 |
Ubiquitin-activating enzyme inhibitors reduce processing of etoposide-induced TOP2A- and TOP2B-DNA covalent complexes; TOP2-DNA complexes are directly conjugated to ubiquitin; inhibition of the Bmi1/Ring1A ubiquitin ligase synergistically enhances TOP2 poison efficacy, establishing ubiquitination as a required step for liberation of protein-free DSBs from TOP2-DNA adducts. |
TARDIS assay; ubiquitin-activating enzyme inhibitors; ubiquitin immunoprecipitation of TOP2-DNA complexes; clonogenic survival assays |
Molecular pharmacology |
Medium |
32587095
|
| 2023 |
Topoisomerase IIα (Top2α) forms abortive Top2-DNA cleavage complexes (Top2ccs) on DNA knots at chromatin bridges during cytokinesis; proteasomal degradation of Top2ccs is required for Rad17 localization to Top2-generated DSB ends; Rad17 then recruits MRN complex and activates ATM-Chk2-INCENP signaling to delay abscission and prevent chromosome breakage, defining the mechanism of the abscission checkpoint. |
Live-cell imaging; immunofluorescence for Top2α, Top2ccs, Rad17, MRN, ATM-Chk2-INCENP; proteasome inhibitor treatments; Top2α catalytic mutant expression; siRNA knockdowns |
The Journal of cell biology |
High |
37638884
|
| 2023 |
RAD54L2 promotes TOP2 cleavage complex (TOP2cc) resolution through a novel mechanism: RAD54L2 recognizes sumoylated TOP2 and, using its ATPase activity, promotes TOP2cc resolution and prevents DSB exposure; this mechanism acts together with ZATT/ZNF451 and independently of TDP2. |
Co-immunoprecipitation; ATPase activity assays; genetic epistasis with TDP2 and ZATT knockouts; TOP2cc resolution assays; DNA damage readouts |
Science advances |
Medium |
38055822
|
| 2022 |
TOP2A deficiency in trophoblast cells inhibits proliferation, migration, and invasion and activates the FOXO signaling pathway; TOP2A inhibition in mouse pre-implantation embryos impairs trophectoderm differentiation, embryonic mitochondrial function, and developmental rate; TOP2A expression is lower in villi tissues of RSA patients compared to normal pregnancies. |
shRNA knockdown and overexpression in trophoblast cell lines; in vitro proliferation, migration, invasion assays; FOXO pathway western blotting; mouse embryo culture with TOP2A inhibitor; immunofluorescence; immunohistochemistry on clinical samples |
Molecular medicine (Cambridge, Mass.) |
Medium |
36585615
|
| 2020 |
Inhibition of TOP2α (using ICRF193 or etoposide) in T cells promotes Top2cc accumulation associated with protein-DNA breaks at genomic DNA, leading to DNA topological disruption and T cell apoptosis; this is linked to diminished TDP2 expression; T cells from patients with chronic viral infection (HBV, HCV, HIV) show lower TOP2α levels and enzymatic activity with Top2cc accumulation. |
TOP2α enzymatic activity assays; Top2cc measurement in genomic DNA; TDP2 western blotting; apoptosis assays; Top2α inhibitor treatment of primary T cells |
Cell death & disease |
Medium |
32193368
|
| 2022 |
In zebrafish, TOP2A mutation causes downregulation of autism-associated genes enriched for PRC2 binding sites and H3K27me3; inhibition of the PRC2 component EZH2 rescues social deficits caused by TOP2A inhibition, placing TOP2A upstream of PRC2/H3K27me3 in an evolutionarily conserved pathway governing social behavior development. |
Drug screen in zebrafish; Top2a mutant zebrafish; RNA-seq; chromatin enrichment for H3K27me3 (H3K27me3 ChIP); EZH2 inhibition rescue; behavioral assays in zebrafish and mice |
Science advances |
Medium |
36417527
|
| 2024 |
CX-5461 (Pol I transcription inhibitor) induces TOP2α-dependent DNA damage preferentially at ribosomal DNA (rDNA) promoter regions, distinct from canonical TOP2α poisons; sensitivity to CX-5461 in murine Eµ-Myc B lymphoma cells is dependent on cellular TOP2α expression/activity. |
TOP2α inhibitor and genetic knockdown experiments; RADAR assay for Top2cc detection; γH2AX immunofluorescence at rDNA loci; murine B lymphoma cell line assays; Eµ-Myc model |
Biomedicines |
Medium |
39062087
|
| 2022 |
TOP2A deficit in decidualizing endometrial stromal cells leads to abnormal decidualization by activating the NF-κB signaling pathway; TOP2A expression is significantly lower in mid-secretory endometrium of women with recurrent implantation failure; TOP2A-deficient mice showed lower fetal weights. |
shRNA knockdown in T-HESCs; mRNA sequencing; NF-κB pathway western blotting; immunofluorescence; in vivo adenovirus-mediated TOP2A knockdown in mice; clinical sample immunohistochemistry |
Reproductive biology and endocrinology : RB&E |
Medium |
36138481
|
| 2018 |
TDP2 alone does not remove TOP2-DNA complexes from genomic DNA in vitro; depletion of TDP2 in cells does not slow removal of TOP2-DNA complexes, indicating that prior proteolytic processing steps are required before TDP2 acts on remaining 5'-tyrosine adducts. SUMOylation of TOP2 by ZATT E3 ligase is a proteasome-independent mechanism for TOP2cc processing. |
TARDIS assay; TDP2 knockdown; in vitro TOP2-DNA complex processing assays; proteasome inhibition; SUMOylated TOP2-DNA complex measurement |
International journal of molecular sciences |
Medium |
30011940
|
| 2022 |
GINS1 physically interacts with TOP2A; GINS1 promotes TOP2A protein stability through USP15-mediated deubiquitination, thereby driving glioma cell proliferation and migration; USP15 knockdown reduces TOP2A protein levels and mimics TOP2A loss-of-function. |
Co-immunoprecipitation; USP15 knockdown; TOP2A ubiquitination assays; cell proliferation and invasion assays; in vivo xenograft |
iScience |
Medium |
36065190
|
| 2024 |
KDM5B demethylase inhibits ZBTB16 transcription by directly reducing H3K4me3 at the ZBTB16 promoter; reduced ZBTB16 subsequently increases TOP2A expression to confer cisplatin resistance; the deubiquitinase USP7 stabilizes KDM5B by deubiquitination, maintaining this KDM5B/ZBTB16/TOP2A axis in NPC. |
ChIP for H3K4me3 at ZBTB16 promoter; KDM5B inhibition/knockdown; ZBTB16 overexpression rescue experiments; USP7 knockdown and ubiquitination assays; cisplatin sensitivity assays in vitro and in vivo |
Cell death and differentiation |
Medium |
38287116
|
| 2015 |
Top2 and Sgs1-Top3 act redundantly to ensure replication fork merging and termination at rDNA barriers; absence of both causes checkpoint activation dependent on the fork barrier protein Fob1 and accumulation of asymmetric X-structures at rDNA; either Top2 or Sgs1-Top3 alone is sufficient to prevent a checkpoint-activating structure at the strongest rDNA barrier. |
Yeast genetics; 2D gel electrophoresis for replication intermediates; checkpoint activation assays; Fob1 epistasis; sgs1, top2, top3 deletion combinations |
PLoS genetics |
High |
26630413
|
| 2023 |
EZH2 promotes TOP2A expression by H3K27me3-mediated epigenetic silencing of miR-139-5p; TOP2A is a direct target of miR-139-5p (validated by dual-luciferase reporter assay and ChIP for H3K27me3 at the miR-139-5p locus); inhibition of this axis induces cellular senescence and inhibits HCC cell proliferation in vitro and in vivo. |
Dual-luciferase reporter assay; ChIP for H3K27me3 at miR-139-5p promoter; miRNA inhibitor/mimic experiments; siRNA/shRNA knockdown; SA-β-galactosidase senescence assay; xenograft tumor model |
Journal of experimental & clinical cancer research : CR |
Medium |
38008711
|
| 2022 |
E2F1 binds directly to the TOP2A promoter and transcriptionally upregulates TOP2A; E2F1 binding sites in the TOP2A promoter region were confirmed by dual-luciferase reporter and ChIP assays; E2F1 silencing decreases TOP2A levels and inhibits GC cell viability and invasion, effects reversed by TOP2A overexpression. |
ChIP assay; dual-luciferase reporter assay; siRNA knockdown of E2F1; TOP2A overexpression rescue; cell viability and invasion assays |
Journal of biosciences |
Medium |
36550695
|
| 2015 |
In yeast, TDP1 (tyrosyl-DNA phosphodiesterase 1) participates in repair of Top2α-induced DNA lesions: TDP1-depleted cells accumulate increased amounts of Top2α cleavage complexes after etoposide treatment, show altered kinetics of complex removal, and exhibit increased chromosomal breaks and exchanges; TDP1 acts in NHEJ and alternative end joining but not in homologous recombination for Top2 damage repair. |
TDP1 shRNA knockdown; Top2α cleavage complex immunodetection in chromatin; γH2AX and pChk1 assays; cytogenetic analysis; micronucleus assay; DNA-PKcs inhibitor epistasis |
Mutation research |
Medium |
26421495
|