| 2000 |
Ebp1 (PA2G4) interacts with the juxtamembrane domain of ErbB-3, with the first 15 amino acids of the juxtamembrane domain essential for binding in vitro; heregulin treatment causes dissociation of Ebp1 from ErbB-3 and translocation of Ebp1 from the cytoplasm to the nucleus. |
Yeast two-hybrid, in vitro binding assay, co-immunoprecipitation, subcellular fractionation/immunofluorescence |
British journal of cancer |
High |
10682683
|
| 2001 |
Ebp1 binds the retinoblastoma protein (Rb) both in vivo and in vitro; the 72 C-terminal amino acids of Ebp1 are sufficient for Rb binding; dephosphorylation of Ebp1 enhances binding to Rb; Ebp1 inhibits E2F1-regulated cyclin-E promoter activity and binds E2F1 indirectly via Rb. |
Co-immunoprecipitation, GST pulldown, reporter gene assay, confocal immunofluorescence |
Journal of cellular physiology |
High |
11268000
|
| 2003 |
Ebp1 represses E2F-regulated transcription via its C-terminal domain, which binds HDAC activity; Ebp1 binds HDAC2 (but not HDAC1) in vitro; HDAC inhibitors reduce Ebp1-mediated repression; an Ebp1 mutant lacking the HDAC-binding domain fails to repress transcription. |
Reporter gene assay, GST pulldown, HDAC activity assay, co-immunoprecipitation, mutagenesis |
Nucleic acids research |
High |
12682367
|
| 2002 |
Ebp1 binds the androgen receptor (AR) in vitro and in vivo; binding is increased by androgen treatment; the C-terminal 79 amino acids of Ebp1 are sufficient to bind AR via its N-terminal domain; Ebp1 inhibits ligand-mediated AR transcriptional activation; an LXXLL motif in Ebp1 is required for this inhibition. |
Co-immunoprecipitation, GST pulldown, transient transfection reporter assay, mutagenesis |
Oncogene |
High |
12165860
|
| 2004 |
Ebp1 is localized to the cytoplasm and nucleolus; nucleolar localization requires sequences at both N- and C-termini; Ebp1 overexpression inhibits proliferation linked to its nucleolar localization; Ebp1 is part of ribonucleoprotein complexes and associates with different rRNA species. |
Confocal immunofluorescence, subcellular fractionation, mass spectrometry, cell proliferation assay |
Oncogene |
High |
15064750
|
| 2004 |
Heregulin regulates the association of Ebp1 with E2F1 promoter elements; Ebp1 binds E2F consensus sequences in nuclear lysates together with E2F1, Rb, and HDAC2; chromatin immunoprecipitation shows Ebp1 is recruited to the E2F1 promoter in vivo; HRG enhances Ebp1-mediated transcriptional repression. |
DNA affinity pulldown, chromatin immunoprecipitation (ChIP), reporter gene assay |
The Journal of biological chemistry |
High |
15073182
|
| 2005 |
Ebp1 interacts with the corepressor Sin3A both in vitro and in vivo; the C-terminal domain of Ebp1 binds Sin3A (via PAD4/HDAC-interacting domain of Sin3A); Ebp1 and Sin3A associate at PSA and E2F1 promoters in vivo; Sin3A enhances Ebp1-mediated repression of AR- and E2F1-regulated genes. |
GST pulldown, co-immunoprecipitation, ChIP, DNA affinity precipitation, reporter gene assay |
Nucleic acids research |
High |
16254079
|
| 2005 |
Ebp1 overexpression down-regulates AR and AR-regulated genes (including PSA); Ebp1 is recruited to the PSA promoter in response to the androgen antagonist bicalutamide as shown by ChIP; androgens fail to stimulate growth of ebp1 transfectants. |
Chromatin immunoprecipitation, microarray, reporter gene assay, in vivo xenograft |
Proceedings of the National Academy of Sciences of the United States of America |
High |
15994225
|
| 2006 |
Nuclear Akt interacts with PKC-phosphorylated Ebp1 (at S360) to prevent DNA fragmentation by caspase-activated DNase (CAD); phospho-mimetic S360D mutant strongly binds nuclear Akt and suppresses apoptosis, while S360A mutant barely binds Akt or inhibits DNA fragmentation; nuclear (not cytoplasmic) Akt enhances Ebp1 antiapoptotic action independent of Akt kinase activity. |
Cell-free apoptotic assay, nuclear extract purification, Co-IP, site-directed mutagenesis, siRNA knockdown, overexpression |
The EMBO journal |
High |
16642037
|
| 2006 |
Ebp1 has two isoforms, p48 and p42: p48 localizes to both cytoplasm and nucleus and suppresses apoptosis; p42 predominantly resides in cytoplasm and promotes differentiation; EGF stimulates p42 to bind ErbB3 in a PKC-phosphorylation-dependent manner; p48 does not bind ErbB3 regardless of EGF; p48 promotes cell proliferation while p42 inhibits it. |
Subcellular fractionation, co-immunoprecipitation, overexpression, siRNA knockdown, flow cytometry |
Proceedings of the National Academy of Sciences of the United States of America |
High |
16832058
|
| 2006 |
Ebp1 contains a dsRNA-binding domain (dsRBD); this domain mediates interaction with dsRNA, is required for nucleolar localization, and for forming RNP complexes; in the cytoplasm, Ebp1 associates with mature ribosomes; Ebp1 inhibits phosphorylation of eIF2α at S51 and interacts with and is phosphorylated by PKR kinase. |
dsRNA-binding assay, co-immunoprecipitation, sucrose gradient fractionation, in vitro kinase assay, deletion mutagenesis, immunofluorescence |
Biochemical and biophysical research communications |
High |
16631606
|
| 2006 |
Ebp1 is identified as a component of cytoplasmic bcl-2 mRNP complexes; recombinant Ebp1 binds bcl-2 ARE RNA but not GM-CSF ARE in vitro; Ebp1 co-precipitates with nucleolin from HL-60 cytoplasmic extracts in an RNA-dependent manner; Ebp1 decreases the rate of decay of bcl-2 ARE-containing transcripts in cell extracts. |
RNA affinity chromatography, MALDI-MS, EMSA, RNA co-immunoprecipitation, RNA decay assay |
The Biochemical journal |
High |
16396631
|
| 2007 |
Crystal structure of murine Ebp1 (p48) reveals a core domain homologous to methionine aminopeptidases (pita bread fold), coupled to a C-terminal extension; the primary RNA-binding site is formed by a Lys-rich motif in the C-terminus mediating FMDV IRES interaction; the structure explains conformational differences between p42 and p48 isoforms and disposition of the LKALL protein-interacting motif. |
X-ray crystallography, mutagenesis, IRES translation assay |
The EMBO journal |
High |
17690690
|
| 2007 |
Human Ebp1 crystal structure at 1.6 Å resolution reveals a conserved pita bread fold homologous to methionine aminopeptidases but without catalytic activity; the structure reveals how Ebp1 may discriminate between protein and RNA interaction partners. |
X-ray crystallography |
FEBS letters |
High |
17765895
|
| 2007 |
Ebp1 specifically interacts with the PB1 subunit of influenza virus RNA polymerase at PB1's transcription primer binding site; Ebp1 inhibits in vitro RNA synthesis by the influenza virus RNA polymerase complex but not capped RNA endonuclease or RNA-cap binding activities; overexpression of Ebp1 interferes with influenza virus production. |
Yeast two-hybrid, in vitro Co-IP, in vitro RNA synthesis assay, overexpression |
Genes to cells |
High |
17295834
|
| 2007 |
Ebp1 forms a complex with nucleophosmin/B23; p48 constitutively binds B23 in the nucleolus requiring B23 K263 sumoylation; p42 selectively binds unsumoylated B23 upon EGF stimulation, dependent on Ser360 phosphorylation; knockdown of B23 or Ebp1 substantially decreases ribosome biogenesis and cell survival. |
Co-immunoprecipitation, immunofluorescence co-localization, siRNA knockdown, ribosome biogenesis assay, site-directed mutagenesis |
The Journal of biological chemistry |
High |
17951246
|
| 2007 |
Protein kinase C-delta phosphorylates Ebp1 at S360, protecting it from caspase-3 cleavage at D196 and D53 sites; PKCδ-deficient cells show robust Ebp1 cleavage; S360 phosphorylation suppresses caspase-3-mediated degradation; D196A mutant markedly protects cells from apoptosis. |
In vitro kinase assay, cell-free apoptotic assay, site-directed mutagenesis, PKCδ knockout cells |
Journal of neurochemistry |
High |
17316401
|
| 2008 |
Human Bre1 acts as an E3 ubiquitin ligase for Ebp1, promoting its polyubiquitination and proteasomal degradation; Ebp1 polyubiquitination is regulated by its phosphorylation; depletion of hBre1 blocks Ebp1 polyubiquitination and elevates Ebp1 protein level; hBre1 suppresses Ebp1's repressive effect on E2F-1. |
In vitro ubiquitination assay, co-immunoprecipitation, siRNA knockdown, Western blot |
Molecular biology of the cell |
High |
19037095
|
| 2009 |
Ebp1 p42 isoform is sumoylated on K93 and K298, which mediate its nuclear translocation and are required for anti-proliferative activity; TLS/FUS acts as a SUMO1 E3 ligase for Ebp1 p42; Ebp1 directly binds TLS/FUS; genotoxic stress-triggered phosphorylation of Ebp1 regulates this interaction; unsumoylated Ebp1 mutants fail to suppress E2F-1 transcription. |
Co-immunoprecipitation, in vitro sumoylation assay, site-directed mutagenesis, siRNA knockdown, reporter gene assay, subcellular fractionation |
Oncogene |
High |
19946338
|
| 2010 |
p48 isoform of Ebp1 binds HDM2 (MDM2), enhancing HDM2-p53 association and promoting p53 polyubiquitination and degradation, thereby reducing steady-state p53 levels and activity in glioblastoma cells. |
Co-immunoprecipitation, ubiquitination assay, Western blot, overexpression/knockdown |
Cancer research |
High |
21098709
|
| 2001 |
PKC phosphorylates Ebp1 on serine/threonine residues in vitro; basal Ebp1 phosphorylation in vivo is PKC-dependent; heregulin-induced phosphorylation is predominantly PKC-independent; PKC inhibition abrogates Ebp1 association with ErbB3. |
In vitro kinase assay, metabolic labeling/phosphorylation analysis, PKC inhibitor treatment, co-immunoprecipitation |
Molecular and cellular endocrinology |
High |
11325528
|
| 2007 |
Ebp1 serine 363 is phosphorylated in vivo; phospho-S363 Ebp1 localizes exclusively to the nucleus; S363A mutation decreases transcriptional repression and abrogates cell growth inhibition; S363A mutant fails to bind HDAC2 and mSin3a despite associating with E2F1 promoter elements. |
Phospho-specific antibody, immunofluorescence, reporter gene assay, co-immunoprecipitation, ChIP |
International journal of oncology |
High |
17786317
|
| 2008 |
PAK1 phosphorylates Ebp1 in vitro at threonine 261; HRG treatment and constitutively active PAK1 enhance threonine phosphorylation of Ebp1 in MCF-7 cells; endogenous Ebp1 binds PAK1 and association is enhanced by HRG; a phospho-mimetic T261E mutation abolishes Ebp1's ability to repress transcription, inhibit growth, and contribute to tamoxifen sensitivity. |
In vitro kinase assay, co-immunoprecipitation, site-directed mutagenesis, reporter gene assay, cell growth assay |
British journal of cancer |
High |
18283314
|
| 2014 |
p42 Ebp1 interacts with the cSH2 domain of p85 (PI3K regulatory subunit), leading to inhibition of PI3K lipid kinase activity; p42 induces proteasomal degradation of p85 by recruiting the HSP70/CHIP E3 ligase complex, which ubiquitinates p85. |
Co-immunoprecipitation, in vitro PI3K activity assay, ubiquitination assay, Western blot, in vivo xenograft |
Cell death & disease |
High |
24651434
|
| 2014 |
p48 Ebp1 interacts with CDK2 through its N-terminal domain; CDK2 specifically phosphorylates p48 at serine 34 (not p42); phospho-ablated S34A mutant antagonizes cell proliferation and transformation; CDK2-mediated S34 phosphorylation is required for p48's oncogenic function. |
Co-immunoprecipitation, in vitro kinase assay, site-directed mutagenesis, cell proliferation assay, mouse xenograft |
Molecular carcinogenesis |
High |
25154617
|
| 2015 |
TIF-IA (a GTP-binding protein that recruits RNA Pol I to ribosomal DNA promoter) binds EBP1; together they enhance transcription of PCNA; GTP binding by TIF-IA and PKCδ-mediated EBP1 phosphorylation are both required for optimal PCNA expression and ribosomal RNA synthesis in T cells. |
Co-immunoprecipitation, reporter gene assay, kinase assay, pharmacological inhibition |
Blood |
Medium |
25691158
|
| 2016 |
EBP1 binds directly to multiple polyphosphoinositides (PPIns) via two lysine-rich motifs at N- and C-termini; the C-terminal PPIn-binding motif is the major contributor to nucleolar localization; a K372N mutation (found in endometrial tumors) within the C-terminal motif alters nucleolar targeting; EBP1 associates with PtdIns(3,4,5)P3 in the nucleolus via electrostatic and hydrophobic interactions as shown by NMR. |
Lipid pulldown, mutagenesis, immunofluorescence, NMR |
The Biochemical journal |
High |
27118868
|
| 2017 |
EBP1 P48 binds to the WD domain of FBXW7 as an oncogenic substrate and sequesters FBXW7α to the cytosol; EBP1 P42 binds to both the F-box domain of FBXW7 and FBXW7 substrates, acting as an adapter to promote FBXW7-mediated degradation of oncogenic targets. |
Co-immunoprecipitation, subcellular fractionation, ubiquitination assay, domain mapping |
Cancer research |
High |
28209614
|
| 2019 |
MYCN directly occupies the PA2G4 gene promoter stimulating its transcription; PA2G4 directly binds MYCN protein protecting it from proteolysis; the MYCN-PA2G4 interaction site was mapped to a 14 amino acid MYCN sequence and a surface crevice of PA2G4; competitive chemical inhibition of this interface reduces MYCN and PA2G4 levels and inhibits neuroblastoma tumorigenesis in vivo. |
ChIP, surface plasmon resonance, mutagenesis, molecular modeling, in vivo tumor model |
Cancer research |
High |
31501192
|
| 2019 |
circERBB2 regulates nucleolar localization of PA2G4, forming a circERBB2-PA2G4-TIFIA regulatory axis to modulate ribosomal DNA transcription and cancer cell proliferation. |
RNA pulldown, RNA immunoprecipitation, FISH, knockdown, in vivo xenograft |
Molecular cancer |
Medium |
31752867
|
| 2019 |
EBP1 directly interacts with Suv39H1 and recruits the E3 ligase MDM2, promoting ubiquitin-proteasome-dependent degradation of Suv39H1 to regulate heterochromatin assembly during neural development; EBP1 also binds to the DNMT1 promoter, repressing DNA methylation. |
Co-immunoprecipitation, ChIP, ubiquitination assay, Western blot, KO mouse model |
Proceedings of the National Academy of Sciences of the United States of America |
High |
31748268
|
| 2019 |
EBP1 binds HNF4α in a LXXLL motif-mediated manner; EBP1 suppresses expression of HNF4α target genes involved in insulin secretion; crystal structure of HNF4α ligand-binding domain in complex with EBP1 LXXLL peptide at 3.15 Å shows EBP1's LXXLL motif competes with HNF4α coactivators for the same binding pocket. |
Yeast two-hybrid, mammalian two-hybrid, GST pulldown, X-ray crystallography, reporter gene assay |
The Journal of biological chemistry |
High |
31362984
|
| 2019 |
Ebp1 p48 interacts with TIF-90 (a splice variant of TIF-IA) to regulate ribosomal RNA synthesis; Ebp1 promotes Akt-mediated protection of TIF-90 stability by preventing TIF-90 ubiquitination by Mdm2 and its proteasomal degradation. |
Co-immunoprecipitation, ubiquitination assay, rRNA synthesis assay, knockdown/overexpression |
Journal of cellular physiology |
Medium |
30793766
|
| 2020 |
Cryo-EM structure of human Ebp1 (p48) bound to the human 80S ribosome at 3.3 Å reveals Ebp1 binds in the vicinity of the peptide exit tunnel, interacting with ribosomal proteins eL19 and uL23 and 28S rRNA; Ebp1-80S binding is enhanced upon puromycin-mediated translational inhibition; Ebp1 can rotate around its insert domain; membrane-targeting domains emerging from the 60S tunnel displace Ebp1. |
Cryo-EM, ribosome profiling, pSILAC/BONCAT mass spectrometry |
Molecular cell |
High |
33357414
|
| 2021 |
Cryo-EM structure of human Ebp1 (p48 isoform) bound to the human 80S ribosome at 3.3 Å: Ebp1 binds near the peptide exit tunnel via interactions with eL19, uL23, and 28S rRNA; binding is enhanced by puromycin-induced translational arrest; Ebp1 can rotate around its insert domain providing conformational flexibility at the ribosome. |
Cryo-EM, sucrose gradient ribosome fractionation |
RNA (New York, N.Y.) |
High |
33479117
|
| 2021 |
EBP1 promotes UPS-dependent degradation of Suv39H1 by directly interacting with it and recruiting E3 ligase MDM2; this mechanism governs heterochromatin assembly and neural development. |
Co-immunoprecipitation, ubiquitination assay, Western blot |
BMB reports |
Medium |
33691908
|
| 2023 |
PA2G4/EBP1 is ubiquitinated at lysine 376 by PRKN/PARKIN on damaged mitochondria; ubiquitinated PA2G4 interacts with the mitophagy receptor SQSTM1/p62 to induce mitophagy, promoting neuroprotection during cerebral ischemia-reperfusion injury; neuron-specific Ebp1 KO increases infarct volume and impairs mitophagy. |
Co-immunoprecipitation, ubiquitination mapping, neuron-specific KO mouse, AAV rescue, mitophagy assay |
Autophagy |
High |
37712850
|
| 2022 |
PA2G4 promotes HCC metastasis by stabilizing FYN mRNA through interaction with the m6A reader YTHDF2; FYN mRNA is m6A-modified and bound by both PA2G4 and YTHDF2; YTHDF2's m6A catalytic activity is indispensable for PA2G4-mediated regulation of FYN. |
Co-immunoprecipitation, RIP, MeRIP, RNA half-life assay, dual luciferase reporter, in vivo lung metastasis model |
Cell & bioscience |
Medium |
35526051
|
| 2025 |
PA2G4 binds the NF110-NF45 heterodimer and prevents NF110 degradation; CRAPIR (a PIWI-interacting RNA) competes with NF110 for binding to PA2G4, thereby preventing PA2G4-NF110 interaction, reducing NF110 degradation, and promoting cardiomyocyte proliferation and heart regeneration. |
Co-immunoprecipitation, RNA pulldown, CRISPR knockout, antagomir knockdown, AAV overexpression, in vivo cardiac injury model |
Nature cardiovascular research |
High |
39814981
|
| 2013 |
EBP1 is a novel component of the ZFP809-TRIM28 retroviral silencing complex; EBP1 depletion reduces PBS-mediated retroviral silencing of Moloney murine leukemia virus in embryonic cells. |
Co-immunoprecipitation (complex identification), siRNA knockdown, retroviral reporter assay |
Journal of virology |
Medium |
24227866
|
| 2016 |
Pa2G4 (EBP1) binds to Six1 in human embryonic kidney cells and interferes with the Six1-Eya1 complex; in Xenopus, knockdown of Pa2G4 downregulates neural border zone, neural crest and cranial placode genes while expanding neural plate genes, demonstrating a role in neural crest and otic development. |
Co-immunoprecipitation (mammalian cells), morpholino knockdown in Xenopus, in situ hybridization |
Developmental biology |
Medium |
27940157
|
| 2018 |
DPPA4 preferentially binds EBP1 p48 isoform in pluripotent cells via DPPA4's SAP domain; DPPA4 transcriptional repressive function is increased by p48 knockdown; this effect is abolished with an interaction-deficient DPPA4 ΔSAP mutant. |
Proteomics screen, co-immunoprecipitation, siRNA knockdown, reporter gene assay, mutagenesis |
Stem cells (Dayton, Ohio) |
Medium |
29327467
|
| 2017 |
p48 Ebp1 physically interacts with beta-tubulin (but not alpha-tubulin) and accumulates in distal microtubule growth cone regions in neurons; introduction of p48 Ebp1 promotes axon regeneration in injured hippocampal slices. |
Co-immunoprecipitation, immunofluorescence, ex vivo axon regeneration assay |
BMB reports |
Low |
27916024
|
| 2011 |
EBP1 inhibits translation of androgen receptor mRNA in castration-resistant prostate cancer cells without altering AR mRNA steady-state levels or stability; heregulin further diminishes AR translation in EBP1-transfected cells. |
Polysome fractionation, Western blot, quantitative PCR, mRNA stability assay |
Anticancer research |
Medium |
21965718
|
| 2012 |
EBP1 decreases ErbB2 mRNA primarily through a transcriptional mechanism; EBP1 binds both distal and proximal endogenous ErbB2 promoters in vivo; Sin3A-interaction mutants of EBP1 have reduced ability to decrease ErbB2 promoter activity; EBP1 overexpression or ablation does not alter ErbB2 mRNA stability. |
ChIP, reporter gene assay, mRNA stability assay, site-directed mutagenesis, shRNA knockdown |
Oncology reports |
Medium |
23242156
|