Affinage

RPL4

Large ribosomal subunit protein uL4 · UniProt P36578

Length
427 aa
Mass
47.7 kDa
Annotated
2026-06-10
100 papers in source corpus 34 papers cited in narrative 33 extracted findings
Cross-family judge vs UniProt: Affinage preferred faithfulness: 6/6 claims corpus-supported (100%)

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

RPL4 (uL4) is a universally conserved large-ribosomal-subunit protein that makes direct, extended contacts with the large-subunit rRNA and is among the earliest proteins to engage the pre-rRNA during subunit biogenesis (PMID:814400, PMID:9838082). In the assembled ribosome it contacts the 23S/large-subunit rRNA at defined positions (Tyr35–U615 and nucleotides 320–325 in E. coli) and lines the peptide exit tunnel, uniquely contacting nascent chains along the entire tunnel length (PMID:6998491, PMID:3278299, PMID:24072706). A conserved internal loop is critical for late assembly steps, while full-length depletion blocks early assembly, defining two temporally separable biogenesis roles (PMID:25246649); in eukaryotes the nascent protein is co-translationally captured by the dedicated chaperone Acl4, whose TPR domain sequesters the exposed internal loop to prevent premature rRNA insertion and whose binding site overlaps that of the transport factor Kap104 to provide continuous protection during nuclear escort, with a eukaryote-specific extension contacting Rpl18 to orchestrate chaperone release and pre-60S incorporation (PMID:25936803, PMID:26447800, PMID:28148929). Beyond its structural role, bacterial L4 is the autogenous regulator of its own S10 operon, acting both translationally and by stabilizing a NusA-dependent transcriptional pause at an attenuator hairpin through direct binding to the mRNA leader using an RNA-binding surface structurally distinct from its rRNA-binding interface (PMID:6996835, PMID:6157482, PMID:2157208, PMID:12738792, PMID:8846294); L4 also binds and inhibits RNase E to broadly stabilize stress-response transcripts (PMID:19144914). Mutations in the conserved loop tip confer macrolide (and in some organisms chloramphenicol/linezolid) resistance by perturbing higher-order 23S rRNA conformation in domains II, III and V and slowing peptide-bond formation and elongation (PMID:10369764, PMID:17956547, PMID:10898684, PMID:16048983). In humans, RPL4 acts extraribosomally by binding the MDM2 acidic domain to suppress p53 ubiquitination and promote an RPL4–RPL5–RPL11–MDM2 complex (PMID:26908445), and supports rRNA processing through interaction with the RNA helicase Guα (PMID:16045751).

Mechanistic history

Synthesis pass · year-by-year structured walk · 16 steps
  1. 1975 High

    Establishing that L4 directly touches rRNA in the assembled ribosome anchored its structural role within the large subunit.

    Evidence UV cross-linking of E. coli 50S subunits with immunological identification

    PMID:814400

    Open questions at the time
    • Did not map the nucleotide contact site
    • Did not address function of the contact
  2. 1980 High

    Mapping the cross-link to Tyr35 of L4 and U615 of 23S rRNA pinpointed the precise rRNA contact and demonstrated the molecular intimacy of the L4–rRNA interface.

    Evidence Protease/nuclease digestion of isolated cross-linked complexes with oligonucleotide analysis

    PMID:6998491

    Open questions at the time
    • Single contact point identified
    • Functional consequence of this contact not tested
  3. 1980 High

    Showing that L4 alone among S10 operon proteins represses translation of the operon, both in vitro and on overexpression in vivo, identified L4 as a self-limiting feedback regulator of ribosomal protein synthesis.

    Evidence DNA-directed in vitro synthesis with purified L4 plus in vivo oversynthesis assays

    PMID:6157482 PMID:6996835

    Open questions at the time
    • Mechanism of translational inhibition not resolved
    • mRNA target site not defined
  4. 1990 High

    Discovery that L4 also stimulates premature transcription termination in the S10 leader, independent of translational control, revealed a second, transcriptional layer of autogenous regulation.

    Evidence In vivo RNA end-mapping plus reconstituted in vitro transcription with purified L4 and NusA

    PMID:1692593 PMID:2157208

    Open questions at the time
    • How L4 stabilizes the paused complex left for later work
    • Did not define leader RNA elements involved
  5. 1995 High

    Dissecting the attenuator showed NusA establishes the polymerase pause while distinct leader elements allow L4 to stabilize it, separating the pause and stabilization functions.

    Evidence Genetic and antisense-oligonucleotide dissection of a purified in vitro transcription system

    PMID:1285127 PMID:7531246 PMID:7844821

    Open questions at the time
    • Atomic structure of the L4-NusA-RNAP complex not determined
  6. 1996 High

    Isolation of mutants that separate ribosome assembly from autogenous control proved L4 uses non-identical RNA-binding surfaces for rRNA versus mRNA recognition.

    Evidence Genetic isolation of L4 mutants with orthogonal assembly and regulation readouts

    PMID:8846294

    Open questions at the time
    • Structural basis of the two interfaces awaited crystallography
  7. 1999 High

    Demonstrating direct, specific L4 binding to a hairpin in the S10 mRNA leader, with three-dimensional mimicry of the rRNA site, explained how one protein recognizes both RNAs.

    Evidence In vitro binding, competition with the rRNA site, and phosphorothioate footprinting

    PMID:12738792

    Open questions at the time
    • Co-structure of L4 with mRNA leader not solved
  8. 1999 High

    Showing L4 erythromycin-resistance mutations perturb 23S rRNA domains II/III/V and lower peptidyl-transferase activity established that L4 mutations act allosterically through rRNA conformation rather than direct drug contact.

    Evidence Chemical probing of 23S rRNA in defined resistance-mutant ribosomes

    PMID:10369764

    Open questions at the time
    • Did not resolve the resistant ribosome structure
    • Link to nascent-chain handling not addressed
  9. 2000 High

    A 1.7 Å crystal structure of L4 provided an atomic framework, identifying separate N-terminal rRNA and C-terminal mRNA/protein binding sites and a large disordered loop.

    Evidence X-ray crystallography of Thermotoga maritima L4

    PMID:10698923

    Open questions at the time
    • Loop ordered only in context of RNA/chaperone
    • Eukaryotic extension not represented
  10. 2005 Medium

    Identifying physical and functional partnership with RNA helicase Guα extended RPL4's role into eukaryotic rRNA processing.

    Evidence Co-IP, siRNA knockdown, and rescue with interaction-deficient RPL4 in mammalian cells

    PMID:16045751

    Open questions at the time
    • Single lab
    • Direct enzymatic mechanism on rRNA not reconstituted
  11. 2009 High

    Discovery that L4 binds and inhibits RNase E and broadly stabilizes stress-response mRNAs revealed an extraribosomal moonlighting role in RNA turnover.

    Evidence Affinity purification, two-hybrid, in vitro cleavage and in vivo mRNA half-life and microarray assays

    PMID:19144914

    Open questions at the time
    • Physiological trigger linking ribosome status to RNase E inhibition not defined
  12. 2014 High

    Separating the consequences of deleting the internal loop versus depleting full L4 defined two distinct biogenesis roles and showed the eukaryote-specific extension is dispensable for viability.

    Evidence Yeast conditional depletion/deletion mutants with ribosome profiling and pulse-chase

    PMID:25246649

    Open questions at the time
    • Molecular events of early versus late assembly steps not resolved at structural level
  13. 2015 High

    Identification of the dedicated chaperone Acl4, which sequesters the internal loop and is escorted to the nucleus, explained how the aggregation-prone nascent L4 is protected and hierarchically incorporated via an Rpl18 co-evolved site.

    Evidence Yeast genetics, co-IP, co-translational capture assays and mutagenesis of contact surfaces

    PMID:25936803 PMID:26447800

    Open questions at the time
    • Order of chaperone release relative to nuclear import not fully resolved
  14. 2016 Medium

    Demonstrating RPL4 binds the MDM2 acidic domain to suppress p53 ubiquitination connected RPL4 to the ribosomal stress–p53 surveillance axis.

    Evidence Reciprocal Co-IP, ubiquitination and p53 stability assays in human cells

    PMID:26908445

    Open questions at the time
    • Single lab
    • Structural basis of MDM2 binding not defined
    • In vivo relevance to tumor suppression not tested
  15. 2016 Medium

    Finding that RPL4 cooperates with Nucleolin to support EBNA1-mediated EBV episome maintenance revealed a host-factor role hijacked by virus.

    Evidence Co-IP, shRNA knockdown, oriP reporter, ChIP and genome copy-number assays

    PMID:26858444

    Open questions at the time
    • Single lab
    • Direct versus ribosome-dependent contribution not separated
  16. 2016 High

    Showing that bacterial uL4 loop deletion causes cold-sensitive assembly defects and altered response to a translation-pause peptide tied the loop to both assembly and nascent-chain sensing.

    Evidence E. coli strains expressing only loop-deleted uL4 with sedimentation and in vivo pausing assays

    PMID:27257065

    Open questions at the time
    • Mechanism by which loop senses specific pause peptides not resolved

Open questions

Synthesis pass · forward-looking unresolved questions
  • How RPL4's extraribosomal functions (MDM2/p53, Guα-dependent processing, viral host-factor roles) are coordinated with its ribosomal duties, and whether they are conserved or context-specific, remains unresolved.
  • No structural model of human RPL4 in extraribosomal complexes
  • Physiological signals partitioning ribosomal versus moonlighting pools unknown
  • No human disease link established in the corpus

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0003723 RNA binding 4 GO:0098772 molecular function regulator activity 4 GO:0005198 structural molecule activity 3 GO:0140110 transcription regulator activity 3
Localization
GO:0005840 ribosome 3 GO:0005634 nucleus 2 GO:0005730 nucleolus 2
Pathway
R-HSA-392499 Metabolism of proteins 4 R-HSA-74160 Gene expression (Transcription) 3 R-HSA-8953854 Metabolism of RNA 2
Complex memberships
60S/large ribosomal subunitRPL4-RPL5-RPL11-MDM2 complexRpl4-Acl4 chaperone complexS10 operon attenuation complex (with NusA/RNAP)

Evidence

Reading pass · 33 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
1980 E. coli ribosomal protein L4 autogenously regulates the S10 operon by inhibiting translation of the promoter-proximal proteins (S10, L3, L4, L23, L2) in vitro; no other S10 operon protein caused selective inhibition, and L4 did not inhibit other operons. Lambda fus3 DNA-directed in vitro protein synthesis system with purified L4 protein addition Cell High 6996835
1980 E. coli ribosomal protein L4, when overproduced in vivo, reduces mRNA synthesis from at least four genes of the S10 operon, identifying L4 as the sole autogenous regulator among eleven S10 operon products. In vivo oversynthesis of individual S10 operon ribosomal proteins with measurement of individual protein synthesis rates Cell High 6157482
1975 Ribosomal protein L4 is the primary RNA-crosslinked protein in the E. coli 50S subunit upon UV irradiation, demonstrating direct RNA-protein contact in the ribosome. UV cross-linking of 50S subunits followed by Sarkosyl gel analysis, 2D electrophoresis, and immunological identification with protein-specific antisera Molecular & general genetics : MGG High 814400
1980 The UV cross-link between L4 and 23S rRNA is located at tyrosine-35 of L4 and uridine-615 of 23S rRNA, establishing the precise RNA-protein contact site. Isolation of cross-linked L4-oligonucleotide complexes, successive protease and nuclease digestions, 2D gel electrophoresis, oligonucleotide analysis Biochemistry High 6998491
1988 L4 is cross-linked to nucleotides 320–325 of E. coli 23S rRNA when 50S subunits are treated with 2-iminothiolane followed by UV irradiation, identifying an additional RNA contact site. Chemical cross-linking (2-iminothiolane + UV), affinity chromatography with antibodies, partial RNA digestion, complex isolation Nucleic acids research Medium 3278299
1990 L4 stimulates premature transcription termination approximately 140 bases from the transcription start site within the S10 operon leader, upstream of the first structural gene, by a mechanism independent of its inhibition of translation. In vivo mapping of 5′ and 3′ ends of newly synthesized RNA; deletion of sequences downstream of termination site Journal of molecular biology High 1692593
1990 L4 stimulates termination of transcription at the S10 attenuator in vitro, but RNA polymerase requires NusA to terminate at this site; L4 increases termination efficiency at the NusA-dependent pause site. Purified in vitro transcription system with purified L4 and NusA proteins Proceedings of the National Academy of Sciences of the United States of America High 2157208
1992 NusA is required for RNA polymerase pausing at the S10 attenuation site; L4 further stabilizes the NusA-modified paused complex. These two activities require genetically separable regions of the S10 leader RNA. In vitro transcription with purified components; isolation of paused complexes; genetic deletion analysis of leader RNA Genes & development High 1285127
1995 The upper stem-loop of the attenuator hairpin is the major determinant for NusA-dependent pausing; upstream hairpin and the ascending side of the attenuator are required for L4 stabilization of the paused complex; NusA is not absolutely required for initial RNA polymerase pausing at low UTP concentration, but is required for L4 to stabilize the pause. Genetic and antisense oligonucleotide competition with purified in vitro transcription system; isolation of paused complexes Journal of molecular biology High 7531246 7844821
1999 E. coli L4 binds directly and specifically to the S10 mRNA leader in vitro; the binding site is a small hairpin structure within the leader but a 64-nucleotide sequence is required for full interaction. Phosphorothioate footprinting shows structural mimicry between the mRNA and rRNA binding sites in three dimensions. In vitro binding assays, competition with 23S rRNA L4-binding site, phosphorothioate footprinting, mutational analysis The Journal of biological chemistry High 12738792
1996 L4 uses non-identical determinants for ribosome assembly and autogenous S10 operon regulation: mutations were isolated that eliminate autogenous control but allow ribosome assembly, and vice versa, showing the two RNA-binding interfaces are distinct. Genetic isolation of L4 mutants; functional assays for ribosome assembly and autogenous control RNA High 8846294
2000 Crystal structure of Thermotoga maritima L4 at 1.7 Å resolution reveals an alternating α/β fold with a large disordered loop; two separate RNA-binding sites are identified: an N-terminal site (disordered loop with flanking helices) for rRNA binding and a C-terminal site (two non-consecutive helices) candidate for S10 mRNA leader interaction; a C-terminal protein-binding interface is also identified. X-ray crystallography at 1.7 Å resolution The EMBO journal High 10698923
1999 Erythromycin resistance mutations in ribosomal protein L4 (but not L22) of E. coli result in decreased peptide-bond-forming activity and perturb the conformation of 23S rRNA nucleotides in domains II, III, and V, without affecting the A2058 region—indicating L4 mutations act by altering rRNA higher-order structure. Chemical modification/probing of 23S rRNA structure in ribosomes from resistance mutants; multiple chemical probes at multiple nucleotide positions Journal of molecular biology High 10369764
2004 L4 mutant ribosomes with altered L4 protein show increased frameshifting, missense decoding, stop codon readthrough, non-AUG initiation, and mutant initiator tRNA utilization, demonstrating that L4 mutations in the 50S subunit also alter 30S subunit structure and function upon association. In vivo translational fidelity assays (frameshifting, readthrough, missense) in E. coli L4 and L22 mutant strains; antibiotic interaction assays Nucleic acids research High 15509870
2007 Eight new L4 mutations in the tentacle region of E. coli L4 confer erythromycin resistance; all reduce in vivo peptide-chain elongation rates and increase precursor 23S rRNA levels; large insertions in L4 cause accumulation of abnormal ribosomal subunits, highlighting L4's role in ribosome assembly and function. In vivo isolation of erythromycin-resistant mutants; sequencing; growth rate measurements; ribosome profiling; rRNA precursor analysis Molecular microbiology High 17956547
2009 E. coli ribosomal protein L4 interacts with RNase E outside its catalytic domain and inhibits RNase E endoribonucleolytic activity in vitro; in vivo, ectopic L4 stabilizes RNase E-targeted mRNAs and stabilizes an antisense regulatory RNA controlling plasmid replication; L4 overexpression broadens mRNA stability for stress-response transcripts. Affinity purification, immunoprecipitation, E. coli two-hybrid screening, in vitro cleavage assays, mRNA half-life measurements, DNA microarray Proceedings of the National Academy of Sciences of the United States of America High 19144914
2015 Eukaryotic Rpl4 (yeast) requires a dedicated assembly chaperone Acl4, which binds the universally conserved internal loop of newly synthesized Rpl4 via a superhelical TPR domain, preventing premature rRNA insertion. Rpl4's eukaryote-specific extension makes distinct interactions with the 60S surface (including a co-evolved site on Rpl18) that orchestrate Acl4 release and Rpl4 pre-ribosome incorporation. Yeast genetics, biochemical pulldowns, co-IP, mutational analysis of RpL4 and RpL18 contact sites, ribosome assembly assays Molecular cell High 25936803
2015 Acl4 acts as dedicated chaperone that binds the long internal loop of Rpl4 (yeast), accompanies it from the cytoplasm to the nucleus, and is required for 60S subunit production; both the internal loop and C-terminal eukaryote-specific extension are essential for Rpl4 function; Rpl4 contains at least five nuclear localization signals. Yeast genetics (slow-growth and 60S deficiency phenotypes), biochemical co-fractionation, co-translational capture assays, localization studies PLoS genetics High 26447800
2017 Crystal structure of yeast Rpl4 bound to its chaperone Acl4 reveals extensive interactions sequestering 70 exposed residues of the extended Rpl4 loop; the eukaryote-specific Rpl4 extension harbors overlapping binding sites for Acl4 and nuclear transport factor Kap104, enabling continuous protection from cellular degradation machinery. X-ray crystallography of Rpl4–Acl4 complex; biochemical binding assays for Kap104 competition; degradation assays Nature communications High 28148929
2014 In yeast, deletion of Rpl4's conserved internal loop impairs growth and reduces large ribosomal subunit levels, affecting later steps in assembly; depletion of full Rpl4 blocks early assembly steps, revealing two distinct roles for L4 in ribosome biogenesis. Deletion of the entire eukaryote-specific C-terminal extension has no effect on viability or 60S production. Yeast genetics (conditional depletion, deletion mutants), ribosome profiling, polysome analysis, pulse-chase labeling RNA High 25246649
2016 In E. coli, deletion of the uL4 loop causes cold-sensitive ribosome assembly defects and accumulation of immature particles; the uL4 loop deletion also impairs response to the cmlA(crb) translation pause peptide but not to the secM pause peptide, while uL22 loop deletion affects different assembly intermediates. Genetic analysis using strains expressing only loop-deleted uL4; ribosome sedimentation, rRNA processing analysis, in vivo pausing assays Nucleic acids research High 27257065
2013 In yeast, ribosomal tunnel proteins Rpl4, Rpl17, and Rpl39 all contact the signal anchor of nascent chains within the exit tunnel; Rpl4 uniquely contacts nascent chain residues throughout the entire ribosomal tunnel length, whereas Rpl17 contacts the middle region and Rpl39 the exit region. UV cross-linking of ribosome-bound nascent chains, FLAG exposure assay for nascent chain secondary structure, antibody-based identification The Journal of biological chemistry High 24072706
1998 Yeast Rpl4 binds specifically to the 35S precursor rRNA in vitro (Ka = 4.4×10⁶/M) but not to mature 25S rRNA, indicating L4 is one of the earliest ribosomal proteins to engage the pre-rRNA during 60S biogenesis. Modified membrane filtration assay and agarose gel mobility shift assay with in vitro synthesized 35S pre-rRNA and purified ribosomal proteins Biochimica et biophysica acta Medium 9838082
2016 Human RPL4 directly interacts with the central acidic domain of MDM2, suppresses MDM2-mediated p53 ubiquitination and degradation, leading to p53 stabilization and activation; RPL4 overexpression promotes MDM2 binding to RPL5 and RPL11 and formation of an RPL4–RPL5–RPL11–MDM2 complex; RPL4 knockdown also induces p53 in an RPL5/RPL11-dependent manner, indicating ribosomal stress. Co-immunoprecipitation, ubiquitination assays, Western blot for p53 stability, cell cycle analysis Oncotarget Medium 26908445
2016 Human RPL4 is essential for EBV Nuclear Antigen 1 (EBNA1) function: EBNA1 binds RPL4; RPL4 knockdown reduces EBNA1 activation of oriP, EBNA1 DNA binding, and EBV genome maintenance. EBV infection redistributes RPL4 to cell nuclei. RPL4 and Nucleolin form a scaffold for an EBNA1-oriP complex. Co-immunoprecipitation, shRNA knockdown, oriP luciferase reporter assay, chromatin immunoprecipitation, EBV genome copy number measurement Proceedings of the National Academy of Sciences of the United States of America Medium 26858444
2005 Human RPL4 physically interacts with RNA helicase II/Guα; the ATPase activity of Guα is required for this interaction; RPL4 knockdown inhibits 47/45S, 32S, 28S, and 18S rRNA production, and this inhibition is rescued by wild-type but not Guα-interaction-deficient RPL4, placing RPL4 as a functional partner of Guα in rRNA processing. Co-immunoprecipitation in mammalian cells, siRNA knockdown, rRNA processing assays, rescue with wild-type vs. mutant RPL4 The FEBS journal Medium 16045751
2000 Translational control of RPL4 mRNA is required for rapid transcription-independent neurite regeneration in PC12 cells and conditioned sensory neurons; antisense oligonucleotides to RPL4 mRNA inhibit neurite regeneration from differentiated PC12 cells and axonal elongation from conditioned sensory neurons. Subtractive hybridization to isolate RPL4 mRNA; antisense oligonucleotide inhibition; neurite regeneration assays in PC12 and sensory neurons Neurobiology of disease Medium 10964612
1998 La autoantigen and CNBP bind mutually exclusively to the 5′UTR of Xenopus RPL4 mRNA, assisted by Ro60 autoantigen as an ancillary factor; CNBP binds as a dimer; mutations in the 5′UTR that disrupt translational control in vivo also disrupt protein binding, implicating these interactions in translational regulation of RPL4. In vitro RNA–protein binding assays, mutational analysis of 5′UTR, competition assays, antibody perturbation, in vivo translational control assays Journal of molecular biology Medium 9710533
1993 Human RPL4 encodes a 425-amino acid protein (47,821 Da) with a 5′UTR initiating with 12 pyrimidines characteristic of vertebrate ribosomal protein mRNAs; comparison across species reveals a conserved N-terminus and a divergent C-terminus. cDNA cloning and sequencing; deduced amino acid sequence and comparison Biochimica et biophysica acta Low 8268230
2015 RPL4 interacts with viral protein VP3 of infectious bursal disease virus (IBDV); RPL4 knockdown reduces viral protein pVP2 expression and virus titers in DF1 cells, indicating RPL4 supports IBDV replication. Immunoprecipitation–mass spectrometry screening, co-immunoprecipitation, confocal colocalization, siRNA knockdown Virus research Medium 26415754
2022 TTC22 directly interacts with RPL4 and promotes binding of WTAP mRNA to RPL4, enhancing WTAP mRNA stability and translation; RPL4 knockdown diminishes TTC22-induced increases in m6A modification levels and downstream SNAI1 upregulation. Co-immunoprecipitation, mRNA stability assays, siRNA knockdown, m6A quantification Oncogene Low 35798874
1999 L4 mutations in S. pneumoniae (G69C substitution; SQ insertion between Q67 and K68 in the conserved KPWRQKGTGRAR motif) confer macrolide resistance in strains without known resistance determinants, establishing that L4 loop mutations can cause macrolide resistance in a pathogen. Serial passage selection, sequencing of 23S rRNA and L4 genes, MIC determination Antimicrobial agents and chemotherapy Medium 10898684
2005 6-bp deletions in the L4 ribosomal protein gene of S. pneumoniae confer resistance to macrolides and chloramphenicol and nonsusceptibility to linezolid; gene transformation of susceptible strain R6 confirmed causality, with a fitness cost observed. Sequencing, gene transformation/complementation, MIC determination Antimicrobial agents and chemotherapy High 16048983

Source papers

Stage 0 corpus · 100 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2000 Mutations in 23S rRNA and ribosomal protein L4 account for resistance in pneumococcal strains selected in vitro by macrolide passage. Antimicrobial agents and chemotherapy 236 10898684
1991 The open reading frames UL3, UL4, UL10, and UL16 are dispensable for the replication of herpes simplex virus 1 in cell culture. Journal of virology 161 1846207
1980 Protein L4 of the E. coli ribosome regulates an eleven gene r protein operon. Cell 124 6157482
2014 Modality-specific thalamocortical inputs instruct the identity of postsynaptic L4 neurons. Nature 117 24828045
1999 Erythromycin resistance mutations in ribosomal proteins L22 and L4 perturb the higher order structure of 23 S ribosomal RNA. Journal of molecular biology 112 10369764
2005 Novel mechanism of resistance to oxazolidinones, macrolides, and chloramphenicol in ribosomal protein L4 of the pneumococcus. Antimicrobial agents and chemotherapy 107 16048983
1975 Specific cross-linking of proteins S7 and L4 to ribosomal RNA, by UV irradiation of Escherichia coli ribosomal subunits. Molecular & general genetics : MGG 102 814400
1980 E. coli ribosomal protein L4 is a feedback regulatory protein. Cell 100 6996835
1999 CD39-L4 is a secreted human apyrase, specific for the hydrolysis of nucleoside diphosphates. The Journal of biological chemistry 96 10400613
1990 The adenovirus L4 100-kilodalton protein is necessary for efficient translation of viral late mRNA species. Journal of virology 95 2335816
2000 Identification and characterization of KLK-L4, a new kallikrein-like gene that appears to be down-regulated in breast cancer tissues. The Journal of biological chemistry 81 10766816
2000 Translational control of ribosomal protein L4 mRNA is required for rapid neurite regeneration. Neurobiology of disease 79 10964612
2007 Novel mutations in ribosomal proteins L4 and L22 that confer erythromycin resistance in Escherichia coli. Molecular microbiology 77 17956547
2006 ATF3 expression in L4 dorsal root ganglion neurons after L5 spinal nerve transection. The European journal of neuroscience 77 16420444
2002 Susceptibilities to telithromycin and six other agents and prevalence of macrolide resistance due to L4 ribosomal protein mutation among 992 Pneumococci from 10 central and Eastern European countries. Antimicrobial agents and chemotherapy 70 11796344
2019 LncRNA SNHG7 accelerates the proliferation, migration and invasion of hepatocellular carcinoma cells via regulating miR-122-5p and RPL4. Biomedicine & pharmacotherapy = Biomedecine & pharmacotherapie 66 31545291
1988 RNA-protein cross-linking in Escherichia coli 50S ribosomal subunits; determination of sites on 23S RNA that are cross-linked to proteins L2, L4, L24 and L27 by treatment with 2-iminothiolane. Nucleic acids research 66 3278299
2001 Adenovirus L4-100K assembly protein is a granzyme B substrate that potently inhibits granzyme B-mediated cell death. Immunity 65 11420045
1980 Precise localization of the site of cross-linking between protein L4 and 23S ribonucleic acid induced by mild ultraviolet irradiation of Escherichia coli 50S ribosomal subunits. Biochemistry 65 6998491
1998 Involvement of the Xenopus laevis Ro60 autoantigen in the alternative interaction of La and CNBP proteins with the 5'UTR of L4 ribosomal protein mRNA. Journal of molecular biology 64 9710533
2015 Coordinated Ribosomal L4 Protein Assembly into the Pre-Ribosome Is Regulated by Its Eukaryote-Specific Extension. Molecular cell 63 25936803
2009 Regulation of ribonuclease E activity by the L4 ribosomal protein of Escherichia coli. Proceedings of the National Academy of Sciences of the United States of America 63 19144914
2015 The Dedicated Chaperone Acl4 Escorts Ribosomal Protein Rpl4 to Its Nuclear Pre-60S Assembly Site. PLoS genetics 61 26447800
2006 The L4 22-kilodalton protein plays a role in packaging of the adenovirus genome. Journal of virology 60 16809303
2004 Activation of the early-late switch in adenovirus type 5 major late transcription unit expression by L4 gene products. Journal of virology 59 14747543
2015 Small GTPase Rab2B and Its Specific Binding Protein Golgi-associated Rab2B Interactor-like 4 (GARI-L4) Regulate Golgi Morphology. The Journal of biological chemistry 56 26209634
1992 Identification and transcriptional analyses of the UL3 and UL4 genes of equine herpesvirus 1, homologs of the ICP27 and glycoprotein K genes of herpes simplex virus. Journal of virology 54 1323700
1999 Translational effects of mutations and polymorphisms in a repressive upstream open reading frame of the human cytomegalovirus UL4 gene. Journal of virology 49 10482583
1995 Nucleotide sequence analysis of a 30-kb region of the bovine herpesvirus 1 genome which exhibits a colinear gene arrangement with the UL21 to UL4 genes of herpes simplex virus. Virology 44 7793062
2016 Ribosomal protein L4 is a novel regulator of the MDM2-p53 loop. Oncotarget 43 26908445
2021 The Zinc Finger Antiviral Protein ZAP Restricts Human Cytomegalovirus and Selectively Binds and Destabilizes Viral UL4/UL5 Transcripts. mBio 42 33947766
1990 Escherichia coli ribosomal protein L4 stimulates transcription termination at a specific site in the leader of the S10 operon independent of L4-mediated inhibition of translation. Journal of molecular biology 41 1692593
2019 Proteome profiling of L3 and L4 Anisakis simplex development stages by TMT-based quantitative proteomics. Journal of proteomics 40 30978463
2006 L4-33K, an adenovirus-encoded alternative RNA splicing factor. The Journal of biological chemistry 40 17028184
2015 Increased expression of HCN2 channel protein in L4 dorsal root ganglion neurons following axotomy of L5- and inflammation of L4-spinal nerves in rats. Neuroscience 39 25813712
2010 Adenovirus late-phase infection is controlled by a novel L4 promoter. Journal of virology 39 20444889
2000 Crystal structure of ribosomal protein L4 shows RNA-binding sites for ribosome incorporation and feedback control of the S10 operon. The EMBO journal 39 10698923
1990 Ribosomal protein L4 stimulates in vitro termination of transcription at a NusA-dependent terminator in the S10 operon leader. Proceedings of the National Academy of Sciences of the United States of America 39 2157208
2001 Identification and molecular characterization of five novel kallikrein gene 13 (KLK13; KLK-L4) splice variants: differential expression in the human testis and testicular cancer. Anticancer research 38 11848466
2012 Failure of translation of human adenovirus mRNA in murine cancer cells can be partially overcome by L4-100K expression in vitro and in vivo. Molecular therapy : the journal of the American Society of Gene Therapy 37 22735379
2004 The coat protein of tobamovirus acts as elicitor of both L2 and L4 gene-mediated resistance in Capsicum. The Journal of general virology 37 15218193
2006 The adenovirus L4 33-kilodalton protein binds to intragenic sequences of the major late promoter required for late phase-specific stimulation of transcription. Journal of virology 36 17093188
2004 Multiple defects in translation associated with altered ribosomal protein L4. Nucleic acids research 35 15509870
2007 Molecular cloning and characterization of the gene encoding cold-active beta-galactosidase from a psychrotrophic and halotolerant Planococcus sp. L4. Journal of agricultural and food chemistry 34 17326654
2007 Ternary complex formation on the adenovirus packaging sequence by the IVa2 and L4 22-kilodalton proteins. Journal of virology 34 17804492
1998 Overexpression of ribosomal proteins L4 and L5 and the putative alternative elongation factor PTI-1 in the doxorubicin resistant human colon cancer cell line LoVoDxR. European journal of cancer (Oxford, England : 1990) 34 9713282
2012 The adenovirus L4-22K protein is multifunctional and is an integral component of crucial aspects of infection. Journal of virology 32 22811519
1999 Phylogenetic analysis of L4-mediated autogenous control of the S10 ribosomal protein operon. Journal of bacteriology 32 10498727
2015 Regulation of human adenovirus alternative RNA splicing by the adenoviral L4-33K and L4-22K proteins. International journal of molecular sciences 31 25636034
2003 RNA-structural mimicry in Escherichia coli ribosomal protein L4-dependent regulation of the S10 operon. The Journal of biological chemistry 31 12738792
2013 Interaction of nascent chains with the ribosomal tunnel proteins Rpl4, Rpl17, and Rpl39 of Saccharomyces cerevisiae. The Journal of biological chemistry 30 24072706
2007 Invariant Ser211 is involved in the catalysis of PD-L4, type I RIP from Phytolacca dioica leaves. Proteins 30 17243169
1993 RNA-binding properties of a translational activator, the adenovirus L4 100-kilodalton protein. Journal of virology 30 8497066
2018 Combined exposure to methylmercury and manganese during L1 larval stage causes motor dysfunction, cholinergic and monoaminergic up-regulation and oxidative stress in L4 Caenorhabditis elegans. Toxicology 29 30336192
1999 The role of the L4 33K gene in adenovirus infection. Virology 29 10544122
2020 Cav3.2 overexpression in L4 dorsal root ganglion neurons after L5 spinal nerve cutting involves Egr-1, USP5 and HMGB1 in rats: An emerging signaling pathway for neuropathic pain. European journal of pharmacology 28 32971090
1999 Colocalization of the herpes simplex virus 1 UL4 protein with infected cell protein 22 in small, dense nuclear structures formed prior to onset of DNA synthesis. Journal of virology 28 10233976
2019 Unilateral L4-dorsal root ganglion stimulation evokes pain relief in chronic neuropathic postsurgical knee pain and changes of inflammatory markers: part II whole transcriptome profiling. Journal of translational medicine 27 31217010
2017 Molecular basis for protection of ribosomal protein L4 from cellular degradation. Nature communications 27 28148929
2016 The extended loops of ribosomal proteins uL4 and uL22 of Escherichia coli contribute to ribosome assembly and protein translation. Nucleic acids research 27 27257065
1992 Ribosomal protein L4 and transcription factor NusA have separable roles in mediating terminating of transcription within the leader of the S10 operon of Escherichia coli. Genes & development 27 1285127
1991 The organization and expression of the Saccharomyces cerevisiae L4 ribosomal protein genes and their identification as the homologues of the mammalian ribosomal protein gene L7a. Molecular & general genetics : MGG 27 2046660
2020 Impact of L4 lymph node dissection on long-term survival in left-side operable non-small-cell lung cancer: a propensity score matching study. European journal of cardio-thoracic surgery : official journal of the European Association for Cardio-thoracic Surgery 26 32016340
2015 Molecular characterisation of new organisation of plnEF and plw loci of bacteriocin genes harbour concomitantly in Lactobacillus plantarum I-UL4. Microbial cell factories 26 26077560
2000 Differentiation of human cytomegalovirus genotypes in immunocompromised patients on the basis of UL4 gene polymorphisms. The Journal of infectious diseases 25 11110652
2019 Propriospinal Neurons of L3-L4 Segments Involved in Control of the Rat External Urethral Sphincter. Neuroscience 24 31785359
2016 Ribosome Protein L4 is essential for Epstein-Barr Virus Nuclear Antigen 1 function. Proceedings of the National Academy of Sciences of the United States of America 24 26858444
2014 Deletion of L4 domains reveals insights into the importance of ribosomal protein extensions in eukaryotic ribosome assembly. RNA (New York, N.Y.) 24 25246649
1995 Role of NusA in L4-mediated attenuation control of the S10 r-protein operon of Escherichia coli. Journal of molecular biology 24 7844821
1994 Identification of the pseudorabies virus UL4 and UL5 (helicase) genes. Virology 24 8030256
2022 TTC22 promotes m6A-mediated WTAP expression and colon cancer metastasis in an RPL4 binding-dependent pattern. Oncogene 22 35798874
2005 Mutation of L4 ribosomal protein conferring unusual macrolide resistance in two independent clinical isolates of Staphylococcus aureus. Microbial drug resistance (Larchmont, N.Y.) 21 15770089
2015 Ribosomal protein L4 interacts with viral protein VP3 and regulates the replication of infectious bursal disease virus. Virus research 20 26415754
2009 Arginine methylation of human adenovirus type 5 L4 100-kilodalton protein is required for efficient virus production. Journal of virology 20 19264777
1992 Primary structures of ribosomal proteins L3 and L4 from Bacillus stearothermophilus. European journal of biochemistry 20 1499563
2013 Adenoviral E2 IVa2 protein interacts with L4 33K protein and E2 DNA-binding protein. The Journal of general virology 19 23388198
1995 RNA determinants required for L4-mediated attenuation control of the S10 r-protein operon of Escherichia coli. Journal of molecular biology 19 7531246
2010 Mutations in 23S rRNA and ribosomal protein L4 account for resistance in Chlamydia trachomatis strains selected in vitro by macrolide passage. Andrologia 18 20629652
2005 Functional interaction between RNA helicase II/Gu(alpha) and ribosomal protein L4. The FEBS journal 18 16045751
1990 Characteristics of PHA-L4, the mitogenic isolectin of phytohemagglutinin, as an ideal biologic response modifier. Molecular biotherapy 18 2185793
2019 Effects of microencapsulated olfactory ensheathing cell transplantation on neuropathic pain and P2X7 receptor expression in the L4-5 spinal cord segment. Neuroscience letters 17 30753909
2010 Adenovirus L4-22K stimulates major late transcription by a mechanism requiring the intragenic late-specific transcription factor-binding site. Virus research 17 20621673
1979 Cat L4-S1 dermatomes determined using signal averaging. Neuroscience letters 17 460741
2006 Linker chains of the gigantic hemoglobin of the earthworm Lumbricus terrestris: primary structures of linkers L2, L3, and L4 and analysis of the connectivity of the disulfide bonds in linker L1. Proteins 16 16425180
2023 Silencing of the immune gene BmPGRP-L4 in the midgut affects the growth of silkworm (Bombyx mori) larvae. Insect molecular biology 15 36705338
2021 LIFU Alleviates Neuropathic Pain by Improving the KCC2 Expression and Inhibiting the CaMKIV-KCC2 Pathway in the L4-L5 Section of the Spinal Cord. Neural plasticity 15 33953740
2015 Laminin L4 domain structure resembles adhesion modules in ephrin receptor and other transmembrane glycoproteins. The FEBS journal 15 25962468
2003 Protein disulphide isomerase of Ostertagia ostertagi: an excretory-secretory product of L4 and adult worms? International journal for parasitology 15 12633650
2000 Activation of transcription of the human cytomegalovirus early UL4 promoter by the Ets transcription factor binding element. Journal of virology 15 11024111
1996 Ribosomal protein L4 from Escherichia coli utilizes nonidentical determinants for its structural and regulatory functions. RNA (New York, N.Y.) 15 8846294
2022 Low-Intensity Focused Ultrasound Alleviates Spasticity and Increases Expression of the Neuronal K-Cl Cotransporter in the L4-L5 Sections of Rats Following Spinal Cord Injury. Frontiers in cellular neuroscience 14 35634464
2022 Macrolide therapy in Pseudomonas aeruginosa infections causes uL4 ribosomal protein mutations leading to high-level resistance. Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases 13 35988850
2021 A Water Soluble Pd2 L4 Cage for Selective Binding of Neu5Ac. Chemistry (Weinheim an der Bergstrasse, Germany) 13 34486179
2015 Adenoviral L4 33K forms ring-like oligomers and stimulates ATPase activity of IVa2: implications in viral genome packaging. Frontiers in microbiology 13 25954255
2015 Expression of Genes Encoding the Enzymes for Glycogen and Trehalose Metabolism in L3 and L4 Larvae of Anisakis simplex. Journal of parasitology research 13 26783451
1998 Yeast ribosomal proteins L4, L17, L20, and L25 exhibit different binding characteristics for the yeast 35S precursor rRNA. Biochimica et biophysica acta 13 9838082
1993 Human ribosomal protein L4: cloning and sequencing of the cDNA and primary structure of the protein. Biochimica et biophysica acta 13 8268230
1991 Ribosomal protein L4 of Escherichia coli: in vitro analysis of L4-mediated attenuation control. Biochimie 13 1764518
1978 Inhibitory effects of phytohemagglutinin isolectins L4 and E4 on L1210 cells. Cancer research 13 565679
2022 Tandem Mass Tagging (TMT) Reveals Tissue-Specific Proteome of L4 Larvae of Anisakis simplex s. s.: Enzymes of Energy and/or Carbohydrate Metabolism as Potential Drug Targets in Anisakiasis. International journal of molecular sciences 12 35457153

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