| 2002 |
hnRNP-R physically interacts with SMN (survival motor neuron) protein via yeast two-hybrid and co-localization; interaction requires wild-type SMN and is abolished by truncated or SMA-associated mutant SMN forms. hnRNP-R is predominantly localized in axons of motor neurons where it co-localizes with SMN. |
Yeast two-hybrid, immunofluorescence co-localization |
Human molecular genetics |
Medium |
11773003
|
| 1998 |
hnRNP R is a 633-amino acid protein with a modular structure: acidic N-terminal region (~150 aa), three RNA recognition motif (RRM) domains, a nuclear localization signal, an octapeptide (PPPRMPPP), and a C-terminal glycine- and arginine-rich RGG box. It was identified as a component of hnRNP complexes by immunoprecipitation and 2D gel co-migration of recombinant protein. |
cDNA cloning, sequence analysis, immunoprecipitation of hnRNP complexes, 2D gel electrophoresis |
Nucleic acids research |
High |
9421497
|
| 2014 |
Smn and hnRNP R are present in presynaptic compartments at neuromuscular endplates of embryonic and postnatal mice, and a direct interaction between Smn and hnRNP R was confirmed in vitro and in vivo, particularly in the cytosol of motoneurons. |
Immunofluorescence of neuromuscular endplates, co-immunoprecipitation (in vitro and in vivo) |
PloS one |
Medium |
25338097
|
| 2018 |
hnRNP R interacts with ~3,500 RNA targets in motoneurons (predominantly with functions in synaptic transmission and axon guidance) as determined by iCLIP. The noncoding RNA 7SK was identified as the top interactor. hnRNP R depletion reduces axonal 7SK levels and causes defective axon growth. 7SK function in axon elongation depends on its interaction with hnRNP R but not on its association with the P-TEFb complex. |
iCLIP (individual nucleotide-resolution cross-linking and immunoprecipitation), shRNA knockdown, axon growth assays, 7SK deletion mutant analysis |
Proceedings of the National Academy of Sciences of the United States of America |
High |
29507242
|
| 2016 |
HNRNPR binds MHC class I mRNAs at their 3' UTRs and enhances their stability and expression. Knockdown of HNRNPR reduces classical and nonclassical MHC class I protein levels and consequently modulates NK cell cytotoxic activity. |
RNA immunoprecipitation, knockdown experiments, NK cell cytotoxicity assays, mRNA stability assays |
Journal of immunology |
Medium |
27194785
|
| 2019 |
hnRNPR stabilizes CCNB1 and CENPF mRNAs, leading to increased expression of these oncoproteins. Knockdown of CCNB1 abolished hnRNPR-induced cell growth, and knockdown of CENPF abolished hnRNPR-induced invasion, placing hnRNPR upstream of these mRNA targets in gastric cancer. |
shRNA knockdown, mRNA stability assays, epistasis via double knockdown, xenograft tumor models |
Aging |
Medium |
31527303
|
| 2021 |
Full-length hnRNP R (containing the N-terminal acidic domain) interacts with the multifunctional protein Yb1 (top hit in proteomic interactome analysis). Upon DNA damage, full-length hnRNP R is required for Yb1 recruitment to chromatin, where Yb1 interacts with γ-H2AX. Motoneurons lacking full-length hnRNP R accumulate double-strand breaks and show impaired DNA damage response. |
Hnrnpr knockout mouse (Hnrnprtm1a/tm1a), proteomic interactome analysis (mass spectrometry), chromatin fractionation, co-IP with γ-H2AX, genotoxic stress assays |
Nucleic acids research |
High |
34850154
|
| 2022 |
hnRNP R negatively regulates transcription elongation by modulating P-TEFb activity. Loss of hnRNP R promotes release of P-TEFb from the 7SK inhibitory complex, accompanied by enhanced hnRNP A1 binding to 7SK. Additionally, hnRNP R interacts with BRD4, and its depletion increases BRD4 binding to CDK9 and stabilizes CDK9 with enhanced association with Cyclin K, resulting in increased RNA polymerase II phosphorylation and transcription. |
hnRNP R knockdown/knockout cells, RNA Pol II phosphorylation assays, co-immunoprecipitation (BRD4, CDK9, 7SK complex), RNA immunoprecipitation |
EMBO reports |
High |
35856391
|
| 2023 |
Cytosolic Ptbp2 binds the 3' UTR of Hnrnpr mRNA and is required for axonal localization of Hnrnpr mRNA and local synthesis of hnRNP R protein in motoneuron axons. This regulation occurs via Ptbp2-mediated association of Hnrnpr mRNA with ribosomes in an eIF5A2-dependent manner, and is necessary for axon growth. |
Ptbp2 conditional KO, RNA immunoprecipitation, ribosome association assays, axon growth assays, live imaging of mRNA localization |
Nature communications |
High |
37438340
|
| 2023 |
hnRNPR binds an AU-rich element (ARE) towards the 3' end of SMN2 exon 7 via RNA-affinity chromatography and potently represses exon 7 inclusion. Both hnRNPR and Sam68 bind this ARE in a competitive manner, with hnRNPR showing stronger inhibitory effect. An exon 5-skipped hnRNPR isoform has minimal inhibitory effect. ASOs inducing hnRNPR exon 5 skipping promote SMN2 exon 7 inclusion. |
SMN2 minigene splicing assay, deletion analysis, RNA-affinity chromatography, co-overexpression analysis, tethering assay |
Journal of medical genetics |
Medium |
37225410
|
| 2024 |
hnRNP R is a component of translation initiation complexes in axons of motoneurons. Through interaction with O-GlcNAc transferase (Ogt), hnRNP R modulates O-GlcNAcylation of eIF4G. Loss of hnRNP R reduces axonal synthesis of cytoskeletal and synaptic components, and restoring axonal O-GlcNAc levels rescues local protein synthesis and axon growth defects. |
Hnrnpr knockout mice, ribosome/translation initiation complex fractionation, co-IP with Ogt, O-GlcNAc proteomics, axon growth assays, neuromuscular junction analysis, motor behavior tests |
Nature communications |
High |
39198412
|
| 2024 |
hnRNPR binds to UPF3B pre-mRNA via its RRM2 domain to generate an exon 8 exclusion truncated splice variant UPF3B-S. UPF3B-S protein then targets the 3'-UTR of CDH1 mRNA to enhance CDH1 mRNA degradation, reducing E-cadherin and activating EMT. UPF3B-S also promotes dephosphorylation of LATS1 and nuclear accumulation of YAP1, activating Hippo signaling. |
RNA immunoprecipitation, RRM2 domain mutant analysis, in vitro and in vivo HCC invasion models, CDH1 mRNA stability assay, LATS1/YAP1 pathway analysis |
Journal of advanced research |
Medium |
38402949
|
| 2024 |
hnRNP R-deficient motoneurons show decreased anterograde and increased retrograde transport of mitochondria in axons, and exhibit mitochondrial hyperpolarization caused by decreased complex I and reversed complex V activity within the respiratory chain. |
Hnrnpr knockout motoneurons, live imaging of mitochondrial motility, mitochondrial membrane potential assays, respiratory chain complex activity assays |
Neurobiology of disease |
Medium |
38408684
|
| 2021 |
hnRNPR uses its RNA recognition motif (RRM) to bind the 3' UTR of HMGCR mRNA, reducing its translation and lowering neuronal cholesterol levels. Knockdown of hnRNPR increases HMGCR expression and cholesterol levels; overexpression decreases them. RNA immunoprecipitation and luciferase reporter assays confirmed direct binding. |
RNA immunoprecipitation, luciferase reporter assay, knockdown/overexpression in N2a and MN1 cells, cholesterol measurement |
Journal of integrative neuroscience |
Medium |
34258925
|
| 2008 |
hnRNP-R binds c-fos mRNA via its AU-rich element (ARE) in the 3' UTR, accelerating both the rise and decline phases of c-fos mRNA and protein in response to PMA. ARE-containing reporter assays showed hnRNP-R significantly reduces GFP expression driven by the c-fos ARE; co-immunoprecipitation-RT-PCR confirmed direct association with c-fos mRNA in retinal cells. |
Co-immunoprecipitation-RT-PCR, ARE-GFP reporter assay, overexpression in R28 cells |
Cellular & molecular biology letters |
Medium |
18197392
|
| 2024 |
HNRNPA2B1 and HNRNPR bind and stabilize ASCL1 mRNA in an m6A-dependent manner: HNRNPR binds the 3' UTR of ASCL1 mRNA, and METTL14-mediated m6A modification is required for this binding (mutations in m6A sites reduce HNRNPR binding). HNRNPR interacts with IGF2BP1, and knockdown of either impairs binding to ASCL1 mRNA. |
RNA immunoprecipitation, m6A site mutagenesis, RNA probe pulldown, METTL14 knockdown, co-IP of HNRNPR with IGF2BP1 |
Biochimica et biophysica acta. Molecular basis of disease |
Medium |
38331110
|
| 2025 |
The X-ray crystal structure (1.90 Å) and NMR studies of hnRNPR RRM1 reveal it is an extended RRM (eRRM) with a canonical RRM and a structured N-terminal extension (Next) motif that docks against the RRM and extends the β-sheet surface. A tryptophan cage in the adjoining loop positions the Next motif; mutagenesis of Next-RRM interface residues and loop residues impairs protein solubility, conformational ordering, and thermal stability. |
X-ray crystallography (1.90 Å), solution NMR spectroscopy, mutagenesis, thermal denaturation |
Protein science |
High |
40247750
|
| 2025 |
RRM3 of HNRNPR, together with a downstream C-terminal charged region, is required for RNA binding specificity. HNRNPR also binds RNA G-quadruplexes (rG4s) via RRM3 with the C-terminal charged region and RG-rich regions within the low complexity domain. rG4 binding depends on RNA folding and specific rG4 structural features. |
High-throughput biochemical RNA binding assays, domain deletion/mutant analysis, rG4-focused RNA pool SELEX-like assays |
bioRxivpreprint |
Medium |
40654891
|
| 2025 |
hnRNP R binds and stabilizes JUN mRNA in an O-GlcNAc glycosylation-dependent manner. Mannose suppresses OGT activity, reducing O-GlcNAcylation of hnRNP R, which then decreases JUN mRNA stability and subsequent IL-8 transcription in NSCLC cells. |
OGT inhibition/mannose treatment, O-GlcNAc proteomics, RNA immunoprecipitation, mRNA stability assay, in vitro and in vivo NSCLC models |
International journal of biological sciences |
Medium |
39990658
|
| 2025 |
hnRNPR protects XB130 mRNA from XRN1- and DIS3L2-mediated degradation by binding to specific regions within the XB130 3' UTR, thereby elevating XB130 expression and promoting NSCLC cell proliferation and EMT via Akt signaling. |
RNA pulldown, RNA immunoprecipitation, dual-luciferase reporter assay, XRN1/DIS3L2 knockdown epistasis, in vitro and in vivo NSCLC models |
Cellular signalling |
Medium |
40268079
|
| 2026 |
HNRNPR regulates Plcz1 (PLCζ) pre-mRNA splicing in an m6A-dependent manner in sperm. Pathogenic mutations in HNRNPR cause reduced expression and mislocalization of PLCζ in spermatozoa, impairing calcium oscillation induction in oocytes and resulting in fertilization failure. |
Whole-exome sequencing of patients, Hnrnpr knock-in mouse model, ICSI with calcium oscillation imaging, PLCζ localization by immunofluorescence, m6A-dependent splicing assay |
EMBO molecular medicine |
Medium |
41618099
|