| 1996 |
CstF-64 is limiting for formation of intact CstF complex, CstF has higher affinity for the IgM μm poly(A) site than the μs site, and overexpression of CstF-64 is sufficient to switch IgM heavy chain expression from membrane-bound to secreted form in a reconstituted in vitro processing reaction. |
Reconstituted in vitro polyadenylation/processing assay, overexpression in B cells, gel-shift/affinity assays |
Cell |
High |
8945520
|
| 1996 |
CstF-64 and CPSF-100 are concentrated in discrete nuclear foci ('cleavage bodies') closely associated with coiled bodies; transcription inhibition causes complete co-localization of cleavage bodies with coiled bodies, indicating a transcription-dependent dynamic interaction. |
Immunofluorescence, monoclonal antibody labeling, electron microscopy immunogold double-labeling, transcription inhibition with α-amanitin/DRB |
The EMBO journal |
High |
8654386
|
| 1998 |
Reducing CstF-64 concentration 10-fold specifically and dramatically reduces IgM heavy chain mRNA accumulation; further reduction causes reversible G0/G1 cell cycle arrest, and depletion causes apoptotic cell death, demonstrating CstF-64 plays roles in regulating gene expression and cell growth in B cells. |
Gene disruption and regulatable transgene replacement in DT40 B cell line; cell growth and cell cycle assays |
Molecular cell |
High |
9885564
|
| 2003 |
The N-terminal RRM of CstF-64 recognizes GU-rich downstream elements; the C-terminal helix of the RRM unfolds upon RNA binding and extends into the hinge domain where interactions with other polyadenylation complex factors occur, suggesting this conformational change initiates polyadenylation complex assembly. UU dinucleotides are specifically recognized within an RRM pocket. |
NMR structure determination of CstF-64 RRM domain, RNA-binding assays |
The EMBO journal |
High |
12773396
|
| 2005 |
The protein-RNA interface of the CstF-64 RRM acquires significant mobility on the micro-to-millisecond timescale upon binding GU-rich RNA, while the free protein is uniformly rigid; this dynamic binding is proposed as the mechanism enabling discrimination between GU-rich and non-GU-rich RNAs. |
NMR relaxation dynamics experiments of free and RNA-bound CstF-64 RRM |
Journal of molecular biology |
High |
15769465
|
| 2006 |
The C-terminal domain of CstF-64 (and yeast ortholog Rna15) folds into a three-helix bundle with an uncommon topological arrangement; a cluster of conserved exposed residues is essential for interaction with Pcf11 (yeast), and this interaction is critical for 3'-end processing but dispensable for transcription termination. |
NMR structure determination, mutagenesis, yeast functional assays (3'-end processing and transcription termination) |
The Journal of biological chemistry |
High |
17116658
|
| 2009 |
The hinge domain of CstF-64 is essential for interaction with CstF-77; this interaction is required for nuclear localization of CstF-64, suggesting that nuclear import of a preformed CstF complex is an essential step in polyadenylation. |
SLAP (stem-loop luciferase assay for polyadenylation) in vivo assay, domain mutagenesis, nuclear/cytoplasmic fractionation |
The Journal of biological chemistry |
High |
19887456
|
| 2009 |
Enterovirus 71 3Cpro cleaves CstF-64 at position 251 in the P/G-rich domain and at multiple sites near position 500 in the C-terminus; this cleavage inhibits host cell 3'-end pre-mRNA processing and polyadenylation, and this impairment is rescued by adding purified recombinant CstF-64. |
In vitro cleavage assay with wild-type and catalytic mutant 3Cpro, serial mutagenesis of CstF-64, in vitro polyadenylation assay with nuclear extracts, rescue with purified CstF-64 |
PLoS pathogens |
High |
19779565
|
| 2009 |
CstF-64 interaction with CstF-77 is required for nuclear accumulation of CstF-64, whereas interaction with symplekin is limiting for histone RNA 3' processing but relatively unimportant for cleavage/polyadenylation; CstF-64 and symplekin bind mutually exclusively to the hinge domain. |
Identification of CstF-64 and symplekin mutants that distinguish these interactions; nuclear localization assays; histone 3' processing assays |
Molecular biology of the cell |
High |
21119002
|
| 2000 |
A variant form of CstF-64 (tauCstF-64, encoded by autosomal Cstf2t on chromosome 19) is expressed specifically in meiotic and postmeiotic male germ cells; it contains a Pro→Ser substitution in the RNA-binding domain and significant changes in the CstF-77 interaction region, suggesting altered polyadenylation specificities. |
cDNA cloning, chromosomal mapping, immunoblot with antibody reactivity and proteolytic digest pattern comparison |
The Journal of biological chemistry |
Medium |
11113135
|
| 2007 |
CstF-64 and tauCstF-64 RNA-binding domains show differential affinities for RNA polymers: CstF-64 has higher affinity for poly(U) while tauCstF-64 has higher affinity for poly(GU); the region C-terminal to the RRM contributes to RNA sequence recognition. |
RNA cross-linking assay with Kd quantification, site-directed mutagenesis of the RRM |
The Biochemical journal |
Medium |
17029590
|
| 2001 |
In C. elegans, CstF-64 forms a complex with the SL2 snRNP (but not SL1 or other U snRNAs); SL2 RNA stem/loop III is required for both SL2 identity and complex formation with CstF-64, providing a molecular framework for coupling of 3' end formation and trans-splicing in polycistronic pre-mRNA processing. |
Immunoprecipitation with anti-CstF-64 antibody, SL2 RNA mutational analysis in vivo and in vitro |
Genes & development |
Medium |
11581161
|
| 2001 |
Elevated levels of CstF-64 in male germ cells enhance selection of the proximal poly(A) site on TB-RBP pre-mRNA, increasing the 1 kb mRNA isoform; CstF-64 preferentially binds to a distal site that produces the 3 kb mRNA, and overexpression shifts poly(A) site selection toward the 1 kb form. |
RNA cross-linking/binding assay, overexpression experiment with isoform quantification |
Molecular reproduction and development |
Medium |
11241784
|
| 2014 |
CstF-64 is required for correct histone mRNA 3' end processing in mouse embryonic stem cells; loss of CstF-64 results in increased polyadenylation of histone mRNAs, slower growth, loss of pluripotency, and lengthened G1 phase. |
CstF-64 knockout mouse ESCs, histone mRNA polyadenylation assay, cell cycle analysis, pluripotency marker assays |
Nucleic acids research |
High |
24957598
|
| 2014 |
CstF-64 is essential for endoderm differentiation in mouse ESCs; loss of CstF-64 abolishes endodermal lineage differentiation and prevents cardiomyocyte formation, which can be rescued by conditioned medium from extraembryonic endodermal stem cells. |
CstF-64 knockout mouse ESCs, lineage marker analysis, cardiomyocyte differentiation assay, XEN cell conditioned medium rescue experiment |
Stem cell research |
Medium |
25460602
|
| 2018 |
The carboxy-terminus of CstF-77 (last 30 amino acids) enhances cleavage/polyadenylation by increasing the stability of the CstF-64 RRM, thereby altering the affinity of the complex for RNA; excess CstF-64 not bound to CstF-77 localizes to the cytoplasm, potentially via interaction with cytoplasmic RNAs. |
Reverse genetics, NMR studies of recombinant CstF-64 RRM-Hinge and CstF-77 domains, nuclear/cytoplasmic localization assays |
Nucleic acids research |
High |
30257008
|
| 2018 |
CSTF2 induces 3'UTR shortening of RAC1 by cotranscriptional recruitment to the GUAAU motif at the proximal polyadenylation site, which attenuates recruitment of transcription elongation factors AFF1 and AFF4, causing defects in transcriptional elongation and promoting use of the proximal poly(A) site. |
RNA-seq, ChIP, RIP, CSTF2 overexpression/knockdown, polyadenylation site usage assays in UCB cells |
Cancer research |
Medium |
30143523
|
| 2020 |
A missense mutation in the CstF-64 RRM (p.D50A) reduces C/P efficiency by altering amino acid side chain positions, changing the electrostatic potential of the RRM and resulting in greater affinity for RNA; in mice, this mutation alters polyadenylation sites in over 1300 genes critical for brain development. |
Reporter gene C/P assay, NMR structural analysis of mutant RRM, mouse model with D50A knock-in, genome-wide poly(A) site analysis |
Nucleic acids research |
High |
32816001
|
| 2022 |
Electrostatic attraction is the dominant factor in CstF-64 RRM binding to U-rich RNA; binding involves enthalpy-entropy compensation supported by changes in picosecond-to-nanosecond timescale dynamics; competition between fast, high-affinity RNA binding and efficient correct C/P exists in vivo. |
NMR spectroscopy, mutagenesis, biophysical assays (ITC/SPR), in vivo C/P assays |
Biophysical journal |
High |
35090899
|
| 2023 |
CSTF2 co-transcriptionally regulates m6A installation by slowing RNA Pol II elongation rate during gene transcription; CSTF2-regulated m6As are recognized by IGF2BP2, an m6A reader that stabilizes mRNAs. |
Transcriptomic m6A profiling (MeRIP-seq) in PDAC tissues, CSTF2 manipulation with RNA Pol II elongation rate assays, IGF2BP2 RIP |
Nature communications |
Medium |
37816727
|
| 2024 |
The CSTF2 RRM domain binds U-rich RNA through a multistep binding process involving differences in picosecond-to-nanosecond timescale dynamics and structural changes in the C-terminal α-helix. |
NMR titration, spin relaxation experiments, paramagnetic relaxation enhancement measurements, rigid-body docking |
Biochemistry |
High |
39305233
|
| 2025 |
CSTF2 shortens the 3'UTR of PGK1 pre-mRNA by binding near the proximal polyadenylation site, causing loss of m6A modification sites; this prevents YTHDF2-mediated mRNA degradation and increases PGK1 protein to enhance glycolysis under hypoxia. YTHDC1 recognizes hypoxia-induced m6A near the proximal poly(A) site and recruits CSTF2 to enhance 3'UTR shortening. |
RIP, APA site usage assays, m6A mapping, CSTF2 knockdown/overexpression, xenograft models, patient-derived organoids, small-molecule screen |
Cancer research |
Medium |
39514400
|
| 2025 |
CSTF2 promotes PolyA polymerase alpha (PAPα) binding to the 3'UTR of CXCL10 RNA, resulting in shortened poly(A) tails and reduced CXCL10 mRNA stability; this diminishes CXCL10-mediated recruitment of innate αβ T cells, suppressing anti-tumor immunity in PDAC. |
RIP, poly(A) tail length assay, CSTF2 knockdown, CXCL10 mRNA stability assay, tumor infiltration analysis |
Cell death and differentiation |
Medium |
39972059
|
| 2022 |
CSTF2 promotes 3'UTR shortening and upregulation of FGF2 mRNA by inducing use of the proximal polyadenylation site, stabilizing FGF2 mRNA through miRNA evasion; FGF2 in turn enhances CSTF2 expression forming a positive feedback loop that drives epithelial-mesenchymal transition in tubular epithelial cells. |
CSTF2 knockdown/overexpression, APA site usage assays, mRNA stability assay, in vivo UUO mouse model, antisense oligonucleotide treatment |
Biochimica et biophysica acta. Molecular basis of disease |
Medium |
36113752
|