| 1996 |
CstF-64 is a limiting subunit of the CstF complex; its accumulation is specifically repressed in primary B cells, and overexpression of CstF-64 is sufficient to switch IgM heavy chain pre-mRNA processing from the membrane-bound (µm) to secreted (µs) form. CstF has higher affinity for the µm poly(A) site, and the µm site is stronger in a reconstituted in vitro processing reaction. |
Reconstituted in vitro polyadenylation/processing assay, overexpression in B cell lines, affinity measurements |
Cell |
High |
8945520
|
| 1998 |
A 10-fold decrease in CstF-64 concentration in the DT40 B cell line specifically and dramatically reduces IgM heavy chain mRNA accumulation; further reduction causes reversible G0/G1 cell cycle arrest, and depletion leads to apoptotic cell death, demonstrating unexpected roles for CstF-64 in regulating gene expression and cell growth. |
Gene disruption of endogenous CstF-64 replaced with regulatable transgene in DT40 cells; cell cycle and apoptosis assays |
Molecular cell |
High |
9885564
|
| 1996 |
CstF-64 (64 kDa subunit) and CPSF 100 kDa are concentrated in discrete nuclear foci ('cleavage bodies') closely associated with coiled bodies; these foci are transcription-dependent and contain newly synthesized RNA, revealing dynamic transcription-coupled subnuclear localization of the 3'-cleavage machinery. |
Immunofluorescence with monoclonal antibodies, alpha-amanitin/DRB transcription inhibition, immunogold electron microscopy, BrU labeling of nascent RNA |
The EMBO journal |
High |
8654386
|
| 2003 |
The N-terminal RNA recognition motif (RRM) of CstF-64 recognizes GU-rich downstream sequence elements; the C-terminal helix of the RRM unfolds upon RNA binding and extends into the hinge domain where interactions with other polyadenylation assembly factors occur, suggesting this conformational change initiates assembly of the polyadenylation complex. Consecutive U residues are required for strong CstF-GU interaction. |
NMR structure determination of the RRM domain free and RNA-bound; mutagenesis of RNA contacts |
The EMBO journal |
High |
12773396
|
| 2005 |
The protein-RNA interface of CstF-64 RRM acquires significant micro-to-millisecond timescale mobility upon binding GU-rich RNA, while the free protein is uniformly rigid. This dynamic behavior at the binding interface is proposed to allow binding to diverse GU-rich sequences while discriminating against non-GU-rich RNAs. |
NMR relaxation dynamics measurements of CstF-64 RRM free and bound to two GU-rich RNA sequences |
Journal of molecular biology |
High |
15769465
|
| 2006 |
The C-terminal domains of CstF-64 and its yeast orthologue Rna15 fold into a three-helix bundle with an uncommon topological arrangement. This domain mediates interaction with Pcf11, and this interaction is critical for mRNA 3'-end processing but dispensable for transcription termination. |
NMR structure determination of C-terminal domains; mutagenesis of conserved surface residues; in vitro 3'-end processing assays with Rna15 mutants |
The Journal of biological chemistry |
High |
17116658
|
| 2009 |
The hinge domain of CstF-64 is essential for interaction with CstF-77 and for nuclear localization; nuclear import of a preformed CstF complex is an essential step in polyadenylation. Loss of the hinge domain abolishes CstF-64-dependent polyadenylation activity as measured by a reporter assay. |
SLAP (stem-loop luciferase assay for polyadenylation) with CstF-64 domain deletion/mutation constructs; co-immunoprecipitation; immunofluorescence localization |
The Journal of biological chemistry |
High |
19887456
|
| 2009 |
EV71 3C protease cleaves CstF-64 at position 251 (N-terminal P/G-rich domain) and at multiple sites near position 500 (C-terminus). This cleavage inactivates CstF-64 and inhibits host cell 3'-end pre-mRNA processing and polyadenylation; impairment is rescued by adding purified recombinant CstF-64 protein. |
In vitro cleavage assay with recombinant 3Cpro and CstF-64; site-directed mutagenesis to map cleavage sites; in vitro polyadenylation assay with 3Cpro-treated nuclear extract; rescue by recombinant CstF-64 |
PLoS pathogens |
High |
19779565
|
| 2010 |
CstF-64 binds CstF-77 and symplekin mutually exclusively through its hinge domain. The CstF-64–symplekin interaction is limiting for histone RNA 3'-end processing but relatively unimportant for cleavage/polyadenylation. Nuclear accumulation of CstF-64 depends on its binding to CstF-77 but not to symplekin. CstF-64τ can compensate for loss of CstF-64 but has lower affinity for CstF-77 and is less stable. |
Identification of CstF-64 and symplekin mutants that distinguish the two interactions; co-immunoprecipitation; complementation assays in cell lines; 3'-end processing assays |
Molecular biology of the cell |
High |
21119002
|
| 2000 |
A variant form of CstF-64, termed tauCstF-64, is encoded by an autosomal gene (Cstf2t) on mouse chromosome 19 and is specifically expressed in meiotic and postmeiotic germ cells to compensate for X-chromosome inactivation of the somatic CstF-64. The tauCstF-64 protein contains a Pro→Ser substitution in its RNA-binding domain and significant changes in the region interacting with CstF-77. |
cDNA cloning; chromosomal mapping; immunoblot; 2D-PAGE; antibody reactivity; proteolytic digest pattern comparison |
The Journal of biological chemistry |
Medium |
11113135
|
| 2001 |
In C. elegans, CstF-64 forms a complex with the SL2 snRNP (but not SL1 or other U snRNAs), linking mRNA 3'-end formation with SL2-specific trans-splicing. Stem/loop III of SL2 RNA is required for both SL2 identity and association with CstF-64. |
Immunoprecipitation of complex with anti-CstF-64 antibody; mutational analysis of SL2 RNA stem-loops; in vivo trans-splicing assays |
Genes & development |
Medium |
11581161
|
| 2007 |
CstF-64 RBD has higher affinity for poly(U) than tauCstF-64 RBD, while tauCstF-64 has higher affinity for poly(GU). A region C-terminal to the RBD (not Pro-41 alone) is important for RNA sequence recognition and differential affinity. |
RNA cross-linking Kd measurements with poly(G), poly(A), poly(C), poly(U), and poly(GU) ribopolymers; mutagenesis of CstF-64 RBD residues |
The Biochemical journal |
Medium |
17029590
|
| 2014 |
CstF-64 supports ESC pluripotency and cell cycle progression by promoting correct 3'-end processing (non-polyadenylation) of replication-dependent histone mRNAs; loss of CstF-64 results in increased histone mRNA polyadenylation, lengthened G1, and loss of pluripotency. τCstF-64 partially compensates and is recruited to the histone mRNA 3'-end processing complex. |
CstF-64 knockout ESCs; RT-PCR and Northern analysis of histone mRNA polyadenylation; cell cycle analysis; pluripotency marker assays; τCstF-64 knockdown in Cstf2-deficient ESCs |
Nucleic acids research |
Medium |
24957598
|
| 2018 |
The carboxy-terminus of CstF-77 enhances CstF-64 RNA binding activity by altering how the RRM of CstF-64 engages RNA, increasing RRM stability and thus the affinity of the CstF complex for RNA. CstF-64 nuclear localization depends on CstF-77 binding; excess CstF-64 accumulates in the cytoplasm, possibly by interacting with cytoplasmic RNAs. |
NMR spectroscopy of recombinant CstF-64 RRM-Hinge and CstF-77 CTD; reverse genetics; RNA binding assays; immunofluorescence localization |
Nucleic acids research |
High |
30257008
|
| 2018 |
CSTF2 promotes 3'UTR shortening of RAC1 by cotranscriptionally binding to a GUAAU motif at the proximal polyadenylation site of RAC1, which attenuates recruitment of transcription elongation factors AFF1 and AFF4, causing defects in elongation and favoring proximal poly(A) site usage. |
RNA sequencing; chromatin immunoprecipitation (ChIP) for CSTF2 and transcription elongation factors; 3'UTR isoform analysis; CSTF2 knockdown/overexpression with migration/invasion assays |
Cancer research |
Medium |
30143523
|
| 2020 |
A missense mutation in the RRM of CSTF2 (p.D50A) causes intellectual disability in males. This mutation changes the electrostatic potential of the RRM, leading to greater (altered on-rate) RNA binding affinity and reduced C/P efficiency, altering polyadenylation sites in over 1300 brain-expressed genes. |
Reporter gene C/P assay; NMR structure and chemical shift perturbation of D50A RRM; genome-wide poly(A) site analysis in knock-in mice |
Nucleic acids research |
High |
32816001
|
| 2022 |
Electrostatic attraction is the dominant force in CSTF2 RRM binding to U-rich RNA; RNA binding is accompanied by enthalpy-entropy compensation and changes in picosecond-to-nanosecond timescale protein dynamics. Competition between fast high-affinity RNA binding and efficient correct C/P is demonstrated in vivo. |
Mutagenesis of surface-charged residues; NMR spectroscopy; biophysical binding assays (ITC, SPR); in vivo C/P reporter assay |
Biophysical journal |
High |
35090899
|
| 2023 |
CSTF2 co-transcriptionally regulates m6A installation on target gene transcripts by slowing RNA Pol II elongation rate during transcription; CSTF2-regulated m6As are predominantly recognized by IGF2BP2, an m6A reader that stabilizes mRNAs. |
Transcriptomic m6A profiling (MeRIP-seq) in PDAC tissues; CSTF2 knockdown/overexpression with m6A and RNA Pol II elongation analysis; RIP for IGF2BP2 |
Nature communications |
Medium |
37816727
|
| 2024 |
CSTF2 RRM binds U-rich RNA through a multistep binding process involving differences in ps-ns dynamics and potential structural changes in the C-terminal α-helix, as determined by NMR titration, spin relaxation, paramagnetic relaxation enhancement, and rigid-body docking. |
NMR titration and spin relaxation; paramagnetic relaxation enhancement; rigid-body docking |
Biochemistry |
High |
39305233
|
| 2025 |
CSTF2 diminishes CXCL10 expression by promoting poly(A) polymerase alpha (PAPα) binding to the 3'UTR of CXCL10 RNA, resulting in shortened poly(A) tails and compromised CXCL10 RNA stability, thereby suppressing iαβT cell infiltration and anti-tumor immunity in PDAC. |
RIP assay for CSTF2 and PAPα binding to CXCL10 3'UTR; poly(A) tail length assay; CSTF2 KO mouse models and co-culture immune assays; Forsythoside B inhibitor targeting CSTF2 RRM |
Cell death and differentiation |
Medium |
39972059
|
| 2025 |
CSTF2 shortens the 3'UTR of PGK1 pre-mRNA by binding near its proximal polyadenylation site, leading to loss of m6A sites that would otherwise be recognized by YTHDF2 (promoting degradation), thereby increasing PGK1 protein levels and enhancing glycolysis under hypoxia. Hypoxia-induced m6A near the proximal poly(A) site is recognized by YTHDC1, which recruits CSTF2 to further enhance PGK1 3'UTR shortening. |
RIP-seq for CSTF2 binding; m6A-seq; 3'UTR isoform analysis; CSTF2 KO in HCC cell lines and xenograft models; YTHDF2/YTHDC1 co-IP; masitinib inhibitor screen |
Cancer research |
Medium |
39514400
|
| 2014 |
Loss of CstF-64 in mouse ESCs results in loss of differentiation potential toward the endodermal lineage, which is necessary for cardiomyocyte specification; endodermal signaling from conditioned medium of XEN stem cells restores cardiomyocyte differentiation in CstF-64-knockout cells, placing CstF-64 upstream of endoderm-dependent cardiac specification. |
CstF-64 knockout ESCs (Cstf2E6); endoderm/mesoderm/cardiac differentiation assays; conditioned medium rescue experiment; marker expression analysis |
Stem cell research |
Medium |
25460602
|