Affinage

ARFIP2

Arfaptin-2 · UniProt P53365

Length
341 aa
Mass
37.9 kDa
Annotated
2026-06-09
15 papers in source corpus 6 papers cited in narrative 6 extracted findings
Cross-family judge vs UniProt: Affinage preferred faithfulness: 4/4 claims corpus-supported (100%)

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

ARFIP2 (POR1/arfaptin 2) is a membrane-associated effector that couples small GTPase signaling to actin cytoskeletal rearrangement and membrane curvature sensing at the cell periphery (PMID:9312003, PMID:25539497). It binds GTP-loaded ARF1, ARF5, and ARF6 as a downstream effector, while engaging Rac1 in the opposite nucleotide state by binding GDP-Rac1 rather than GTP-Rac1 (PMID:9312003, PMID:11478794). This dual specificity underlies a curvature-dependent switch: on highly curved membranes ARFIP2 preferentially partitions to the bilayer, releasing Rac1 for activation, whereas on low-curvature membranes it sequesters inactive Rac1 and competitively blocks its activation, a behavior that also modulates osteoblast differentiation (PMID:25539497). In the context of lysosomal damage and intracellular bacterial infection, ARFIP2 acts as a component of ATG9A vesicles, binding and sequestering PI4P on damaged lysosomes to balance OSBPL-dependent lipid transfer and recruiting the AP-3 adaptor complex to drive ATG9A vesicle retrieval and PI4K2A delivery, thereby supporting lysosomal repair and homeostasis (PMID:40460835).

Mechanistic history

Synthesis pass · year-by-year structured walk · 4 steps
  1. 1997 Medium

    Established ARFIP2/POR1 as a regulatory effector linking ARF6 to peripheral actin polymerization, answering whether ARF6 acts on the cytoskeleton through an intermediary protein.

    Evidence GTP-dependent direct interaction assay plus co-expression of POR1 deletion mutants with actin polymerization readout in cells

    PMID:9312003

    Open questions at the time
    • Did not define the structural basis of GTP-dependent binding
    • Did not resolve whether ARF1/ARF5 also engage POR1
  2. 2001 Medium

    Defined the nucleotide-state specificity of ARFIP2, showing it is an effector of GTP-ARF1/5/6 yet binds Rac1 only in the GDP-bound state, reframing its relationship to Rac1 signaling.

    Evidence Yeast two-hybrid and GST pull-down with active, wild-type, and dominant-negative ARFs and Rac1

    PMID:11478794

    Open questions at the time
    • Functional consequence of GDP-Rac1 binding not yet established
    • No structural mapping of the distinct ARF versus Rac1 interfaces
  3. 2015 Medium

    Connected ARFIP2's nucleotide-opposite binding to a membrane-curvature-sensing mechanism that gates Rac1 activation and influences osteoblast differentiation.

    Evidence siRNA knockdown with Rac1/Arf1 activation pull-down assays and ALP activity on defined-diameter nanofibers

    PMID:25539497

    Open questions at the time
    • Curvature thresholds defined on synthetic nanofibers, not native membranes
    • Molecular determinants of the curvature switch not dissected
  4. 2025 High

    Placed ARFIP2 in lysosomal repair as an ATG9A-vesicle component that sequesters PI4P and recruits AP-3, answering how PI4P levels and PI4K2A delivery are balanced on damaged lysosomes.

    Evidence Lysosomal damage models (sterile and bacterial), vesicle fractionation, PI4P binding and AP-3 recruitment assays, and loss-of-function with live imaging (peer-reviewed; preprint at idx 3)

    PMID:40460835

    Open questions at the time
    • Structural basis of PI4P sequestration not resolved
    • Relationship between the ARF/Rac1 cytoskeletal role and the lysosomal role unclear
    • Direct interaction of ARFIP2 with AP-3 subunits not mapped

Open questions

Synthesis pass · forward-looking unresolved questions
  • How ARFIP2's GTPase-effector and curvature-sensing activities mechanistically integrate with its ATG9A/PI4P lysosomal repair function remains unresolved.
  • No unified structural model across functions
  • Tissue/context determinants of which role dominates unknown

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0098772 molecular function regulator activity 3 GO:0008092 cytoskeletal protein binding 2 GO:0008289 lipid binding 1 GO:0140299 molecular sensor activity 1
Localization
GO:0005764 lysosome 1 GO:0005886 plasma membrane 1 GO:0031410 cytoplasmic vesicle 1
Pathway
R-HSA-5653656 Vesicle-mediated transport 1 R-HSA-9612973 Autophagy 1
Complex memberships
ATG9A vesicles

Evidence

Reading pass · 6 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
1997 POR1 (ARFIP2) directly interacts with ARF6 in a GTP-dependent manner, and co-expression of POR1 deletion mutants inhibits ARF6(Q67L)-induced actin polymerization at the cell periphery; a synergistic effect between POR1 and ARF6 for induction of actin polymerization was detected, placing POR1 as a regulatory element downstream of ARF6 in cytoskeletal rearrangements. Co-expression dominant-negative/deletion mutants, direct protein interaction assay (GTP-dependent binding), actin polymerization phenotypic readout in cells The EMBO journal Medium 9312003
2001 Arfaptin 2/POR1 (ARFIP2) binds GTP-loaded ARF1, ARF5, and ARF6 but not GTP-Rac1; instead it binds GDP-Rac1, establishing that POR1 is a downstream effector of GTP-ARFs and interacts with Rac1 in a nucleotide-state-opposite manner. Yeast two-hybrid assay and GST pull-down assay with constitutively active, wild-type, and dominant-negative forms of ARFs and Rac1 Biochemical and biophysical research communications Medium 11478794
2015 POR1 (ARFIP2) senses membrane curvature on nanofibers: on small-diameter (highly curved) nanofibers POR1 preferentially binds the membrane, releasing Rac1 to activate; on low-curvature substrates POR1 binds inactive Rac1 and competitively inhibits its activation. POR1 knockdown abolished the curvature-dependent Rac1 activation trend and increased osteoblast differentiation (ALP activity) independent of curvature. POR1 siRNA knockdown, Rac1 and Arf1 activation assays (pull-down for active GTPase), ALP activity assay on nanofibers of defined diameter Integrative biology : quantitative biosciences from nano to macro Medium 25539497
2024 ARFIP2 is a component of ATG9A vesicles; it binds and sequesters PI4P on damaged lysosomes, thereby balancing ORP/OSBPL-dependent lipid transfer and promoting retrieval of ATG9A vesicles through recruitment of the adaptor protein complex-3 (AP-3). ATG9A vesicles deliver PI4K2A to damaged lysosomes during sterile damage and intracellular bacterial infection, and ARFIP2 is required for lysosomal repair and homeostasis. Lysosomal damage assays (sterile damage + bacterial infection), co-localization and vesicle fractionation, PI4P binding assays, AP-3 recruitment assays, loss-of-function studies bioRxiv (preprint)preprint Medium bio_10.1101_2024.07.23.604321
2025 ARFIP2, as a component of ATG9A vesicles, binds and sequesters PI4P on damaged lysosomes to balance OSBPL-dependent lipid transfer and promote ATG9A vesicle retrieval via AP-3 recruitment; ATG9A vesicles deliver PI4K2A to damaged lysosomes during sterile damage and intracellular bacterial infection. Lysosomal damage models (sterile and bacterial), vesicle fractionation, PI4P binding assays, AP-3 recruitment assays, loss-of-function experiments, live imaging Developmental cell High 40460835
2022 ARFIP2 overexpression in hepatocellular carcinoma cells promotes EMT and inhibits autophagy partially through activation/phosphorylation of Akt via the PI3K/Akt signalling pathway, as shown by in vitro and xenograft experiments. Western blotting, immunofluorescence, CCK-8, transwell migration/invasion, xenograft mouse model; ARFIP2 overexpression and knockdown with PI3K/Akt pathway readouts Journal of hepatocellular carcinoma Low 36573219

Source papers

Stage 0 corpus · 15 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
1997 A role for POR1, a Rac1-interacting protein, in ARF6-mediated cytoskeletal rearrangements. The EMBO journal 202 9312003
2001 Differential binding of arfaptin 2/POR1 to ADP-ribosylation factors and Rac1. Biochemical and biophysical research communications 44 11478794
2025 ATG9A and ARFIP2 cooperate to control PI4P levels for lysosomal repair. Developmental cell 21 40460835
2015 Geometry sensing through POR1 regulates Rac1 activity controlling early osteoblast differentiation in response to nanofiber diameter. Integrative biology : quantitative biosciences from nano to macro 20 25539497
2012 Mitochondrial porin Por1 and its homolog Por2 contribute to the positive control of Snf1 protein kinase in Saccharomyces cerevisiae. Eukaryotic cell 20 23104570
2021 Circular RNA circ-ARFIP2 regulates proliferation, migration and invasion in human vascular smooth muscle cells via miR-338-3p-dependent modulation of KDR. Metabolic brain disease 15 33837886
2018 Mitochondrial Voltage-Dependent Anion Channel Protein Por1 Positively Regulates the Nuclear Localization of Saccharomyces cerevisiae AMP-Activated Protein Kinase. mSphere 9 29359182
2018 Disruption of por1 gene in Candida utilis improves co-production of S-adenosylmethionine and glutathione. Journal of biotechnology 9 30553804
2004 Characterization of plasmid pOR1 from Ornithobacterium rhinotracheale and construction of a shuttle plasmid. Applied and environmental microbiology 9 15466524
2016 Genome Sequences of Pseudomonas oryzihabitans Phage POR1 and Pseudomonas aeruginosa Phage PAE1. Genome announcements 7 27313312
2022 ARFIP2 Regulates EMT and Autophagy in Hepatocellular Carcinoma in Part Through the PI3K/Akt Signalling Pathway. Journal of hepatocellular carcinoma 6 36573219
2018 Saccharomyces cerevisiae mitochondrial Por1/yVDAC1 (voltage-dependent anion channel 1) interacts physically with the MBOAT O-acyltransferase Gup1/HHATL in the control of cell wall integrity and programmed cell death. FEMS yeast research 4 30184078
2024 Combined transcriptome and proteome analysis reveals MSN and ARFIP2 as biomarkers for trastuzumab resistance of breast cancer. Breast cancer research and treatment 2 38750271
2025 The miR-125 targeting ARFIP2 and the miR-3770 targeting Rrs1_0 are involved in beta-cypermethrin resistance in cockroach. International journal of biological macromolecules 1 40957517
2024 The small yeast GTPase Rho5 requires specific mitochondrial outer membrane proteins for translocation under oxidative stress and interacts with the VDAC Por1. European journal of cell biology 1 38503132

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