Affinage

AP2B1

AP-2 complex subunit beta · UniProt P63010

Length
937 aa
Mass
104.6 kDa
Annotated
2026-06-09
44 papers in source corpus 13 papers cited in narrative 13 extracted findings
Cross-family judge vs UniProt: Affinage preferred faithfulness: 6/6 claims corpus-supported (100%)

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

AP2B1 (β2-adaptin/CLAPB1) is the β-subunit of the clathrin-associated AP-2 adaptor complex and functions as a core mediator of clathrin-mediated endocytosis, coupling cargo and accessory proteins to clathrin-coated pit assembly (PMID:31694949, PMID:39893205). It physically engages β-arrestin1 in a cascade that drives clathrin-mediated internalization of influenza A virus, and disrupting the β-arrestin1/AP2B1 interaction with Barbadin or depleting AP2B1 sharply reduces viral uptake (PMID:31694949). AP2B1 also binds amphiphysin following its dephosphorylation by PTENα to support endocytosis in olfactory neurons (PMID:31291551), and is engaged by the GTP-dependent protein GPN3, which together with AP2S1 and clathrin light chain A modulates clathrin-coated pit invagination and EGFR internalization (PMID:39893205). In neurons, AP2B1 levels are tightly controlled translationally: FMRP represses AP2B1 mRNA, and FMRP loss elevates AP2B1 protein to enhance AP-2-mediated endocytosis of AMPA receptors including GluA2, a phenotype rescued by restoring AP2B1 to wild-type levels (PMID:40740492); AP2B1 knockdown also impairs dendritogenesis through mTOR-dependent GluA2 biosynthesis (PMID:28190237). Beyond endocytosis, AP2B1 acts as a required mediator of full-length IL-33-induced Smad3 phosphorylation through the TGF-β receptor (PMID:32977155), is transcriptionally upregulated by NRF1 in hypoxic microglia to enhance phagocytosis (PMID:35704676), and has been assigned a nuclear role transporting GAL3ST1-sulfated histone H3 to drive β-catenin-dependent transcription in gastric cancer cells (PMID:41686426). AP2B1 expression is further tuned by upstream regulators including the SLC35B4–heparan sulfate–AGRN axis (PMID:40130891) and miR-145b (PMID:39813009).

Mechanistic history

Synthesis pass · year-by-year structured walk · 12 steps
  1. 1995 Medium

    Established the genomic locus of the AP-2 β large subunit, providing the foundation for studying the human gene.

    Evidence Somatic cell hybrid panel PCR mapping to chromosome 17q11.2-q12

    PMID:8595912

    Open questions at the time
    • No functional characterization
    • No protein-level or interaction data
  2. 2017 Medium

    Placed AP2B1 upstream of mTOR-dependent GluA2 biosynthesis in neuronal development, extending its role beyond endocytic machinery to dendritogenesis.

    Evidence shRNA knockdown in rat hippocampal neurons with GluA2 and S6K1 rescue, mTOR pathway assays

    PMID:28190237

    Open questions at the time
    • Molecular mechanism linking AP2B1 to mTOR not defined
    • Direct binding partners in this pathway not identified
  3. 2019 High

    Defined AP2B1 as the direct adaptor link between β-arrestin1 and clathrin-mediated internalization of influenza A virus, validated pharmacologically and by knockdown.

    Evidence Co-immunoprecipitation, siRNA knockdown, Barbadin inhibitor, viral internalization assay

    PMID:31694949

    Open questions at the time
    • Binding interface on AP2B1 not mapped
    • Generalizability beyond FFAR2/IAV cargo unresolved
  4. 2019 Medium

    Showed that AP2B1 recruitment of amphiphysin is gated by PTENα-mediated dephosphorylation, linking phosphatase signaling to endocytosis in olfactory neurons.

    Evidence In vitro dephosphorylation assay, co-IP/pulldown, mouse overexpression with behavioral readout

    PMID:31291551

    Open questions at the time
    • Direct phospho-sites on amphiphysin governing AP2B1 binding not fully resolved
    • Single lab
  5. 2020 Medium

    Identified an endocytosis-independent role for AP2B1 as a required mediator of FLIL33-induced Smad3 phosphorylation via the TGF-β receptor.

    Evidence siRNA knockdown, overexpression, Smad3 phospho-Western, anti-TGF-β neutralization

    PMID:32977155

    Open questions at the time
    • Mechanism by which AP2B1 engages the TGF-β receptor not defined
    • No structural or direct interaction data
  6. 2022 Medium

    Demonstrated transcriptional control of AP2B1 by NRF1 under hypoxia, linking its abundance to microglial phagocytosis and BBB disruption.

    Evidence Hypobaric hypoxia mouse model, cultured microglia, NRF1 promoter assays, PLX5622 depletion

    PMID:35704676

    Open questions at the time
    • Endocytic substrates underlying enhanced phagocytosis not identified
    • Direct NRF1 binding site detail limited
  7. 2025 High

    Resolved how AP2B1 protein levels are translationally constrained by FMRP, mechanistically connecting AP2B1 dosage to AMPA receptor endocytosis in fragile X syndrome models.

    Evidence Surface proteome mass spectrometry, FMRP-mRNA association, polysome assay, shRNA rescue, AMPAR endocytosis assay

    PMID:40740492

    Open questions at the time
    • FMRP-binding element on AP2B1 mRNA not mapped
    • Selectivity of AP-2 for GluA2 over other cargo not fully defined
  8. 2025 Medium

    Showed that GPN3 binds AP2B1/AP2S1 and clathrin light chain A in a GTP-dependent manner to restrain coated-pit invagination and EGFR endocytosis, identifying a new modulator of AP2B1 function.

    Evidence Co-IP, co-localization, coated-pit invagination assay, EGFR endocytosis assay, GTP manipulation

    PMID:39893205

    Open questions at the time
    • Whether GPN3 directly contacts AP2B1 versus another subunit unresolved
    • Single lab
  9. 2025 Medium

    Embedded AP2B1 in an upstream regulatory axis whereby SLC35B4-driven heparan sulfate biosynthesis and AGRN control AP2B1 expression to enable IAV internalization.

    Evidence Sequential siRNA knockdown of pathway components, AP2B1 expression measurement, viral internalization assay

    PMID:40130891

    Open questions at the time
    • Mechanism by which AGRN controls AP2B1 expression not defined
    • Epistasis based on knockdown alone
  10. 2025 Medium

    Proposed an unprecedented nuclear histone-transport role for AP2B1, shuttling sulfated histone H3 to drive β-catenin transcription and metastasis in gastric cancer.

    Evidence Nuclear transport assay with AP2B1, ChIP for histone marks, reporter assays, in vivo metastasis models

    PMID:41686426

    Open questions at the time
    • How a cytoplasmic adaptor accesses the nucleus not mechanistically explained
    • Single study, not independently replicated
  11. 2025 Medium

    Identified miR-145b as a direct negative regulator of AP2B1, connecting its downregulation to noise-induced hearing loss.

    Evidence Luciferase 3'UTR reporter, RT-qPCR/Western, in vivo miR-145b depletion, auditory brainstem response

    PMID:39813009

    Open questions at the time
    • Endocytic targets of AP2B1 in cochlear hair cells not identified
    • Single lab
  12. 2025 Low

    Flagged a redox-sensitive, low-accessibility cysteine (Cys818) on AP2B1 responsive to oxidative stress, hinting at a possible post-translational regulatory site.

    Evidence Chemical proteomics with fluorinated porphyrin probe, MS site ID, live-cell labeling under diamide stress

    PMID:41626552

    Open questions at the time
    • Functional consequence of Cys818 modification not established
    • No link to endocytic activity demonstrated

Open questions

Synthesis pass · forward-looking unresolved questions
  • How AP2B1 reconciles its canonical cytoplasmic AP-2 adaptor function with reported nuclear histone-transport and TGF-β/Smad3 signaling roles remains unresolved.
  • No structural basis for non-canonical roles
  • Cargo selectivity determinants of AP2B1 not defined
  • Whether nuclear and signaling functions reflect a distinct pool of AP2B1 unknown

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0060090 molecular adaptor activity 3 GO:0038024 cargo receptor activity 2
Localization
GO:0005886 plasma membrane 2 GO:0005634 nucleus 1
Pathway
R-HSA-5653656 Vesicle-mediated transport 3 R-HSA-162582 Signal Transduction 2
Complex memberships
AP-2 adaptor complex

Evidence

Reading pass · 13 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
1995 AP2B1 (CLAPB1/AP2 beta large subunit) was chromosomally mapped to human chromosome 17q11.2-q12 by PCR amplification from rodent-human hybrid DNA panels, establishing its genomic locus. Somatic cell hybrid panel PCR mapping Genomics Medium 8595912
2017 Knockdown of AP2B1 (AP2b1/β2-adaptin) in developing rat hippocampal neurons reduced dendrite number and decreased AMPA receptor subunit GluA2 levels via inhibition of mTOR. Overexpression of GluA2 or the mTOR effector p70S6K (S6K1) rescued the dendritic arbor defect, placing AP2B1 upstream of mTOR-dependent GluA2 biosynthesis in dendritogenesis. shRNA knockdown in rat hippocampal neurons, rescue by GluA2 overexpression and S6K1 restoration, mTOR pathway assays Molecular neurobiology Medium 28190237
2019 β-arrestin1 physically interacts with AP2B1 (the β2-subunit of the AP-2 clathrin adaptor complex), and this FFAR2–β-arrestin1–AP2B1 signaling cascade is required for efficient clathrin-mediated endocytosis of influenza A virus. siRNA knockdown of AP2B1 or treatment with Barbadin (an inhibitor of the β-arrestin1/AP2B1 interaction) dramatically reduced IAV internalization. Co-immunoprecipitation, siRNA knockdown, Barbadin inhibitor treatment, viral internalization assay Journal of virology High 31694949
2019 PTENα directly dephosphorylates the endocytic protein amphiphysin and promotes its binding to AP2B1 in olfactory bulb neurons, thereby regulating endocytosis and olfactory function. In vitro dephosphorylation assay, co-immunoprecipitation/pulldown, mouse overexpression model with behavioral readout FASEB journal Medium 31291551
2019 Wnt16 activates the planar cell polarity (PCP)/JNK pathway by interacting mainly with AP2B1 (and to a lesser extent Ror2 and CD146) in chondrocytes, subsequently inducing PTHrP expression through the phospho-Raptor mTORC1 pathway to inhibit chondrocyte hypertrophy. Co-immunoprecipitation/interaction assays, transgenic mouse and conditional KO models, intra-articular adenoviral injection, 3D chondrocyte pellet culture, biochemical pathway analysis Annals of the rheumatic diseases Medium 30745310
2020 Full-length IL-33 (FLIL33) overexpression increased levels of AP2B1 and AP2A1 subunits of the AP-2 complex, and siRNA-mediated knockdown of AP2B1 blocked FLIL33-induced Smad3 phosphorylation; conversely, AP2B1 overexpression alone induced Smad3 phosphorylation independent of TGF-β, demonstrating AP2B1 as a required mediator of FLIL33-driven Smad3 signaling through a TGF-β-independent but TGF-β receptor-dependent mechanism. siRNA knockdown, overexpression, Western blotting for Smad3 phosphorylation, anti-TGF-β antibody neutralization Cellular immunology Medium 32977155
2022 NRF1 transcriptionally upregulates AP2B1 in microglia under hypoxia to enhance phagocytic function, contributing to blood-brain barrier disruption in high-altitude cerebral edema. In vivo hypobaric hypoxia mouse model, in vitro cultured microglia, transcriptional regulation assays (NRF1 on AP2B1 promoter), microglia depletion by PLX5622 Journal of molecular cell biology Medium 35704676
2025 GPN3 interacts with AP2B1 and AP2S1 (clathrin-mediated endocytosis modulators) and with clathrin light chain A (CLTA); upregulation of GPN3 inhibits clathrin-coated pit invagination and reduces EGFR endocytosis, thereby prolonging EGFR signaling on the cell surface. This interaction and GPN3's effects on endocytosis are GTP-dependent. Co-immunoprecipitation, co-localization imaging, clathrin-coated pit invagination assay, EGFR endocytosis assay, GTP abundance manipulation Cell death discovery Medium 39893205
2025 FMRP associates with and represses translation of AP2B1 mRNA; loss of FMRP in fragile X syndrome models leads to increased steady-state AP2B1 protein levels, enhanced AP-2-mediated endocytosis of AMPA receptors (including dendritic GluA2), and shRNA knockdown of AP2B1 to wild-type levels in FMRP-deficient neurons rescues this endocytosis phenotype. Quantitative mass spectrometry of surface proteome, FMRP-mRNA association assay, polysome/translation assay, shRNA rescue in FMRP-deficient neurons, AMPA receptor endocytosis assay iScience High 40740492
2025 SLC35B4-mediated UDP-xylose transport promotes heparan sulfate biosynthesis, which regulates the homeostasis of the HSPG member AGRN, and AGRN in turn controls the expression level of AP2B1 to facilitate clathrin-mediated endocytosis of influenza A virus. The SLC35B4–XYLT2–B4GALT7–EXT1/2–AGRN–AP2B1 axis is required for efficient IAV internalization. siRNA knockdown of pathway components, AP2B1 expression level measurement, viral internalization assay, AGRN protein homeostasis assays mBio Medium 40130891
2025 GAL3ST1-sulfated histone H3 (H3Y99sulf) is translocated to the nucleus via AP2B1 in gastric cancer cells, where it recruits KAT2A to establish H3K56 acetylation and activate β-catenin transcription, driving epithelial-mesenchymal transition and metastasis. Mechanistic biochemical assays, nuclear transport assay with AP2B1, ChIP for histone marks, transcriptional reporter assays, in vivo metastasis models Cancer research Medium 41686426
2025 miR-145b targets AP2B1 mRNA and negatively regulates its expression in mouse cochleae; permanent threshold shift (PTS) noise exposure increased miR-145b and decreased AP2B1 expression, and depletion of miR-145b alleviated auditory threshold shifts and outer hair cell loss by upregulating AP2B1. Luciferase reporter assay (miR-145b targeting Ap2b1 3'UTR), RT-qPCR and western blotting, in vivo miR-145b depletion, auditory brainstem response measurement Cell biochemistry and biophysics Medium 39813009
2025 A fluorinated porphyrin-based thiol-reactive probe identified Cys818 of AP2B1 as a cysteine residue with very low solvent accessibility (relative solvent accessible area 0.02) that is sensitive to protein interactions induced by diamide-induced oxidative stress in live cells. Chemical proteomics with fluorinated porphyrin probe, mass spectrometry site identification, live-cell labeling under diamide stress Innovation Low 41626552

Source papers

Stage 0 corpus · 44 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2002 Targets of gene amplification and overexpression at 17q in gastric cancer. Cancer research 165 11980659
2019 Wnt16 attenuates osteoarthritis progression through a PCP/JNK-mTORC1-PTHrP cascade. Annals of the rheumatic diseases 95 30745310
2020 The G Protein-Coupled Receptor FFAR2 Promotes Internalization during Influenza A Virus Entry. Journal of virology 78 31694949
2019 Endo-lysosomal proteins and ubiquitin CSF concentrations in Alzheimer's and Parkinson's disease. Alzheimer's research & therapy 74 31521194
2019 Circular RNA NF1-419 enhances autophagy to ameliorate senile dementia by binding Dynamin-1 and Adaptor protein 2 B1 in AD-like mice. Aging 67 31860870
2010 Analysis of chemotherapy response programs in ovarian cancers by the next-generation sequencing technologies. Gynecologic oncology 57 20181382
2022 Cerebrospinal fluid biomarker panel of synaptic dysfunction in Alzheimer's disease and other neurodegenerative disorders. Alzheimer's & dementia : the journal of the Alzheimer's Association 45 36239248
2022 NRF1-mediated microglial activation triggers high-altitude cerebral edema. Journal of molecular cell biology 43 35704676
2022 Cerebrospinal Fluid Biomarkers of Synaptic Dysfunction are Altered in Parkinson's Disease and Related Disorders. Movement disorders : official journal of the Movement Disorder Society 43 36504237
2018 Haplotype-based genome-wide association study identifies loci and candidate genes for milk yield in Holsteins. PloS one 42 29447209
2018 A comprehensive transcriptome analysis of skeletal muscles in two Polish pig breeds differing in fat and meat quality traits. Genetics and molecular biology 41 29658965
2021 ZHX2 promotes HIF1α oncogenic signaling in triple-negative breast cancer. eLife 38 34779768
2016 Existence of Neural Crest-Derived Progenitor Cells in Normal and Fuchs Endothelial Dystrophy Corneal Endothelium. The American journal of pathology 36 27639969
2009 Otitis media: a genome-wide linkage scan with evidence of susceptibility loci within the 17q12 and 10q22.3 regions. BMC medical genetics 32 19728873
2017 Identification of New Tumor Suppressor Genes in Triple-Negative Breast Cancer. Cancer research 29 28724549
2017 Adaptor Complex 2 Controls Dendrite Morphology via mTOR-Dependent Expression of GluA2. Molecular neurobiology 28 28190237
2017 Differential Peripheral Proteomic Biosignature of Fluoxetine Response in a Mouse Model of Anxiety/Depression. Frontiers in cellular neuroscience 28 28860968
2020 Alzheimer Disease Pathology-Associated Polymorphism in a Complex Variable Number of Tandem Repeat Region Within the MUC6 Gene, Near the AP2A2 Gene. Journal of neuropathology and experimental neurology 26 31748784
2016 Utilising the EGFR interactome to identify mechanisms of drug resistance in non-small cell lung cancer - Proof of concept towards a systems pharmacology approach. European journal of pharmaceutical sciences : official journal of the European Federation for Pharmaceutical Sciences 21 27112992
2022 Endosomal-Lysosomal and Autophagy Pathway in Alzheimer's Disease: A Systematic Review and Meta-Analysis. Journal of Alzheimer's disease : JAD 20 35754279
2016 Investigating the specific core genetic-and-epigenetic networks of cellular mechanisms involved in human aging in peripheral blood mononuclear cells. Oncotarget 18 26895224
2024 Proteomic characterization of hUC-MSC extracellular vesicles and evaluation of its therapeutic potential to treat Alzheimer's disease. Scientific reports 17 38472335
2018 Associations of genetic variants in endocytic trafficking of epidermal growth factor receptor super pathway with risk of nonsyndromic cleft lip with or without cleft palate. Molecular genetics & genomic medicine 14 30411541
2020 The interactome of the prostate-specific protein Anoctamin 7. Cancer biomarkers : section A of Disease markers 12 32176628
2013 The effect of clozapine on mRNA expression for genes encoding G protein-coupled receptors and the protein components of clathrin-mediated endocytosis. Psychiatric genetics 11 23811784
2021 Endocytic Protein Defects in the Neural Crest Cell Lineage and Its Pathway Are Associated with Congenital Heart Defects. International journal of molecular sciences 9 34445520
2020 Full-length IL-33 regulates Smad3 phosphorylation and gene transcription in a distinctive AP2-dependent manner. Cellular immunology 9 32977155
1995 Chromosome localization of human genes for clathrin adaptor polypeptides AP2 beta and AP50 and the clathrin-binding protein, VCP. Genomics 9 8595912
2023 Digital color-coded molecular barcoding reveals dysregulation of common FUS and FMRP targets in soma and neurites of ALS mutant motoneurons. Cell death discovery 7 36702823
2019 PTENα regulates endocytosis and modulates olfactory function. FASEB journal : official publication of the Federation of American Societies for Experimental Biology 7 31291551
2023 Screening and Bioinformatics Analyses of Key miRNAs Associated with Toll-like Receptor Activation in Gastric Cancer Cells. Medicina (Kaunas, Lithuania) 6 36984512
2025 Cellular SLC35B4 promotes internalization during influenza A virus entry. mBio 4 40130891
2024 LINC08148 promotes the caveola-mediated endocytosis of Zika virus through upregulating transcription of Src. Journal of virology 4 38742902
2023 AI Machine Learning Technique Characterizes Potential Markers of Depression in Two Animal Models of Depression. Brain sciences 4 37239235
2025 GTPase GPN3 facilitates cell proliferation and migration in non-small cell lung cancer by impeding clathrin-mediated endocytosis of EGFR. Cell death discovery 3 39893205
2024 Synaptic Vesicle-Related Proteins and Ubiquilin 2 in Cortical Synaptosomes Mediate Cognitive Impairment in Vascular Dementia Rats. Molecular neurobiology 3 38990251
2025 FMRP-dependent translational control negatively regulates adapter protein complex 2-mediated endocytosis. iScience 2 40740492
2011 Identification of 129S6/SvEvTac-specific polymorphisms on mouse chromosome 11. DNA and cell biology 2 21988490
2025 Associations between fluid biomarkers and PET imaging ([ 11 C]UCB-J) of synaptic pathology in Alzheimer's disease. bioRxiv : the preprint server for biology 1 40236111
2025 Sex-dependent epigenetic disruption of YY1 binding by prenatal BPA exposure downregulates Matr3 and alters Agap1 splicing in the offspring hippocampus. Biology of sex differences 1 40790242
2025 Associations between fluid biomarkers and PET imaging ([11C]UCB-J) of synaptic pathology in Alzheimer's disease. Alzheimer's & dementia : the journal of the Alzheimer's Association 1 40878905
2026 GAL3ST1-Mediated Histone Tyrosine Sulfation Induced by Cancer-Associated Fibroblasts Promotes Gastric Cancer Metastasis. Cancer research 0 41686426
2025 miR-145b/AP2B1 Axis Contributes to Noise-induced Sensorineural Hearing Loss In a Male Mouse Model. Cell biochemistry and biophysics 0 39813009
2025 One-step labeling with a fluorinated porphyrin-based probe enables in situ imaging and profiling of the thiol proteome. Innovation (Cambridge (Mass.)) 0 41626552

Missed literature

Know a paper Affinage missed for AP2B1? Flag it for the maintainers and the community.

No submissions yet.