Affinage

ACTN1

Alpha-actinin-1 · UniProt P12814

Length
892 aa
Mass
103.1 kDa
Annotated
2026-06-09
24 papers in source corpus 18 papers cited in narrative 18 extracted findings
Cross-family judge vs UniProt: tie faithfulness: 5/5 claims corpus-supported (100%)

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

ACTN1 encodes α-actinin-1, a non-muscle actin-crosslinking protein whose core function is to bundle and organize the F-actin cytoskeleton, an activity required for proper cellular architecture across megakaryocytes, cardiomyocytes, and endothelial cells [PMID:23434115, PMID:bio_10.1101_2025.03.28.645933, PMID:41605926]. Pathogenic missense mutations distributed across all major structural domains — the actin-binding domain (ABD), the spectrin-like rod repeats, and dimerization-relevant regions — disorganize the actin cytoskeleton, produce abnormal proplatelet formation in megakaryocytes, and cause autosomal dominant macrothrombocytopenia (PMID:23434115, PMID:24069336, PMID:26453073, PMID:31237726). In cardiomyocytes ACTN1 localizes to focal adhesions and is non-redundantly required for focal adhesion maturation and sarcomere Z-line assembly, a function that ACTN2 cannot substitute [PMID:bio_10.1101_2025.03.28.645933]. ACTN1 abundance is tightly controlled at multiple levels: Cullin-3-mediated ubiquitin-dependent degradation limits its accumulation during myogenesis (PMID:30990797), the USP14 deubiquitinase stabilizes the protein by removing ubiquitin chains (PMID:41291211), STAT5A transcriptionally sustains its expression to maintain F-actin and mitochondrial architecture [PMID:bio_10.1101_2025.05.26.656095], and miR-129-5p represses it post-transcriptionally (PMID:38566572). Beyond structural crosslinking, ACTN1 functions in signaling and tumor progression: it binds MOB1 to suppress Hippo/LATS1/YAP signaling (PMID:33413564), engages integrin β1 to activate FAK/PI3K/AKT and, via enhanced MYH9–GSK-3β interaction, drives β-catenin signaling in a c-Myc-coupled feedback loop (PMID:38057867), and partners with ITGA5 to promote proliferation and invasion (PMID:36742137). Its actin-bundling activity is further modulated by interacting proteins including LLGL2, which alters its localization (PMID:38136424), and PDLIM5, which cooperates with ACTN1/ACTN4 to drive filopodia formation and sprouting angiogenesis (PMID:41605926).

Mechanistic history

Synthesis pass · year-by-year structured walk · 14 steps
  1. 2013 High

    Established that ACTN1 mutations cause human disease by disrupting megakaryocyte cytoskeletal organization, answering how a cytoskeletal crosslinker links to platelet production defects.

    Evidence Transfection of ABD mutations in CHO cells and retroviral transduction of mouse fetal liver-derived megakaryocytes with morphological analysis of proplatelet formation

    PMID:23434115 PMID:24069336

    Open questions at the time
    • Did not resolve which actin-bundling biophysical parameter is altered by each mutation
    • Restricted to ABD-domain mutations
  2. 2015 Medium

    Extended the disease mechanism beyond the ABD by showing rod-domain (SLR2) and dimerization-hindering mutations also disorganize actin, indicating multiple structural routes to loss of function.

    Evidence Immunofluorescence of transfected CHO cells and in vitro expression of rod-domain variants with actin network morphology analysis

    PMID:26453073 PMID:31237726

    Open questions at the time
    • Single-method (IF) for some variants
    • Quantitative biophysical effect on dimerization not directly measured
  3. 2002 Medium

    Revealed isoform diversity by identifying a brain-specific ACTN1 splice variant, raising the question of tissue-specific cytoskeletal functions.

    Evidence RT-PCR and in situ hybridization in rat brain with developmental and regional expression analysis

    PMID:12099693

    Open questions at the time
    • Functional role of the brain-specific isoform not determined
    • No binding-partner or activity data for this isoform
  4. 2011 Medium

    Placed ACTN1 in a defined muscle-associated complex with FHL1 and PDLIM1, establishing physical partnerships in cardiac tissue.

    Evidence Tandem affinity purification with LC-MS, reciprocal IP from mouse heart ventricles, and 3D fluorescence microscopy in cardiomyocytes

    PMID:21246116

    Open questions at the time
    • Functional consequence of the complex not tested
    • Stoichiometry and direct binary contacts unresolved
  5. 2019 High

    Showed that ACTN1 protein levels must be actively restrained, identifying Cullin-3-mediated degradation as essential for myogenesis and neuromuscular junction development.

    Evidence Cullin-3 knockout mice, C2C12 overexpression with fusion and acetylcholine receptor clustering assays, and proteomic detection of ACTN1 accumulation

    PMID:30990797

    Open questions at the time
    • Direct E3-substrate ubiquitination biochemistry not fully reconstituted
    • Adaptor selecting ACTN1 within Cullin-3 complex not defined
  6. 2021 Medium

    Connected ACTN1 to growth-control signaling by showing it binds MOB1 to suppress Hippo/LATS1/YAP and promote tumor growth.

    Evidence Co-IP, p-LATS1/p-YAP western blotting, ACTN1 knockdown in HCC cells, xenograft models, and YAP pharmacological inhibition rescue

    PMID:33413564

    Open questions at the time
    • Single lab without reciprocal in vivo genetic validation
    • Whether actin-bundling activity is required for MOB1 inhibition unknown
  7. 2023 Medium

    Defined ACTN1 as a node in oncogenic adhesion/Wnt signaling via integrin β1/FAK/PI3K/AKT, MYH9-dependent GSK-3β degradation driving β-catenin, and an ITGA5-dependent invasion axis.

    Evidence Reciprocal Co-IP, IP-mass spectrometry, dual-luciferase reporter, siRNA rescue, and xenograft/patient-derived xenograft models in HNSCC

    PMID:36742137 PMID:38057867

    Open questions at the time
    • Multiple signaling claims rest on single-lab data
    • Direct versus indirect nature of ACTN1–GSK-3β coupling not separated
  8. 2024 Medium

    Added post-transcriptional control by demonstrating miR-129-5p directly represses ACTN1 to limit anchorage-independent growth.

    Evidence 3'UTR luciferase reporter, RT-qPCR, miR-129-5p overexpression, and anchorage-independent growth assay in HPV-transformed keratinocytes

    PMID:38566572

    Open questions at the time
    • In vivo relevance of the miRNA-ACTN1 axis untested
    • Single cellular context
  9. 2023 Medium

    Showed ACTN1 function can be modulated by localization rather than abundance, with LLGL2 redirecting ACTN1 to impair actin bundling and suppress ovarian cancer invasion.

    Evidence IP-mass spectrometry, LLGL2 overexpression/knockdown, migration/invasion assays, and in vivo metastasis model

    PMID:38136424

    Open questions at the time
    • Mechanism by which LLGL2 relocalizes ACTN1 unresolved
    • Direct binding interface not mapped
  10. 2025 Medium

    Identified USP14 as the stabilizing deubiquitinase counterbalancing ACTN1 degradation, tying ACTN1 abundance to mesenchymal glioblastoma phenotypes.

    Evidence Ubiquitination assay, USP14 inhibition with IU1, western blotting, and intracranial xenograft models

    PMID:41291211

    Open questions at the time
    • Direct USP14–ACTN1 binding not biochemically reconstituted
    • Relationship to Cullin-3 pathway not co-analyzed
  11. 2025 Medium

    Positioned ACTN1 as the downstream effector of a STAT5A–actin–mitochondria axis, linking transcriptional control to cytoskeletal and mitochondrial integrity.

    Evidence STAT5A/B knockout with ACTN1 ectopic rescue, live-cell imaging, mitochondrial morphology, DRP1 recruitment, and cGAS-STING/IFN assays (preprint)

    PMID:bio_10.1101_2025.05.26.656095

    Open questions at the time
    • Preprint, not yet peer-reviewed
    • Direct STAT5A binding to the ACTN1 promoter not shown
  12. 2025 Medium

    Demonstrated non-redundant ACTN1 function at cardiomyocyte focal adhesions required for sarcomere assembly, distinguishing it from ACTN2.

    Evidence siRNA knockdown, vinculin/paxillin live-cell imaging, and isoform-specific rescue with ACTN1 versus ACTN2 in hiPSC-derived cardiomyocytes (preprint)

    PMID:bio_10.1101_2025.03.28.645933

    Open questions at the time
    • Preprint, not yet peer-reviewed
    • Molecular basis for ACTN1 vs ACTN2 non-redundancy undefined
  13. 2026 Medium

    Showed PDLIM5 cooperates with ACTN1/ACTN4 to drive F-actin bundling, filopodia formation, and sprouting angiogenesis, defining a partner that activates ACTN1's bundling function.

    Evidence Co-IP with domain mapping (PDLIM5 S593/F596), endothelial-specific Pdlim5 knockout, filopodia/F-actin imaging, and in vivo tumor vascular assays

    PMID:41605926

    Open questions at the time
    • Direct ACTN1 contribution not separated from ACTN4
    • Whether PDLIM5 alters bundling kinetics biophysically untested
  14. 2026 Medium

    Established ACTN1 as a druggable target whose enhanced F-actin affinity stabilizes endothelial junctions, identifying lobetyolin as a direct binder.

    Evidence Chemical proteomics, molecular docking, endothelial barrier assays, and an in vivo acute lung injury mouse model

    PMID:42202915

    Open questions at the time
    • Binding site on ACTN1 not crystallographically defined
    • Selectivity over ACTN4 not established

Open questions

Synthesis pass · forward-looking unresolved questions
  • How the multiple abundance-control pathways (Cullin-3, USP14, STAT5A, miR-129-5p) are integrated, and whether ACTN1's signaling roles depend on or are separable from its actin-bundling activity, remain unresolved.
  • No unified model linking degradation, stabilization, and transcriptional control
  • Structure-function separation of crosslinking versus signaling not addressed
  • No high-resolution structure of mutant ACTN1 explaining domain-specific cytoskeletal failure

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0008092 cytoskeletal protein binding 4 GO:0060090 molecular adaptor activity 4
Localization
GO:0005856 cytoskeleton 4 GO:0005886 plasma membrane 1
Pathway
R-HSA-1643685 Disease 4 R-HSA-162582 Signal Transduction 3 R-HSA-392499 Metabolism of proteins 2
Complex memberships
FHL1/PDLIM1 muscle complexfocal adhesion

Evidence

Reading pass · 18 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2013 ACTN1 mutations within the actin-binding domain (ABD) disrupt normal actin-based cytoskeletal structure in CHO cells and in mouse fetal liver-derived megakaryocytes, causing disorganized cytoskeleton and production of abnormally large proplatelet tips reduced in number, establishing ACTN1's role in megakaryocyte cytoskeletal organization and platelet biogenesis. In vitro transfection in CHO cells; retroviral transduction of mouse fetal liver-derived megakaryocytes; immunofluorescence; morphological analysis of proplatelet formation American journal of human genetics High 23434115
2013 A missense mutation (p.Arg46Gln) in the actin-binding domain of ACTN1 causes disorganization of the cellular cytoplasm in transfected COS-7 cells, as observed by immunofluorescence, and disorganized megakaryocyte ultrastructure by electron microscopy. Immunofluorescence in transfected COS-7 cells; electron microscopy of cultured mutation-harboring megakaryocytes PloS one Medium 24069336
2015 An ACTN1 mutation in the spectrin-like repeat 2 (SLR2) rod domain (p.Leu395Gln), outside the ABD and CaM domains, also causes disorganization of the actin cytoskeleton in CHO cells, demonstrating that rod domain mutations can disrupt ACTN1 cytoskeletal function. Immunofluorescence in transfected CHO cells Annals of hematology Medium 26453073
2019 Rod domain ACTN1 variants predicted to hinder dimer formation cause actin network disorganization and increased thickness of actin fibers when expressed in vitro, extending the spectrum of ACTN1 structural domains whose mutation disrupts cytoskeletal function. In vitro expression of ACTN1 variants; actin network morphology analysis Human mutation Medium 31237726
2019 Cullin-3 E3-ubiquitin ligase mediates degradation of ACTN1 during myogenesis; loss of Cullin-3 causes accumulation of ACTN1 in muscle. Overexpression of ACTN1 in C2C12 myoblasts triggers defects in fusion, myogenesis, and acetylcholine receptor clustering, establishing that Cullin-3-dependent regulation of ACTN1 protein levels is essential for normal muscle and neuromuscular junction development. Cullin-3 knockout mice; C2C12 myoblast overexpression; immunofluorescence; acetylcholine receptor clustering assay; proteomic identification of ACTN1 accumulation JCI insight High 30990797
2021 ACTN1 physically interacts with MOB1 (co-immunoprecipitation) and competitively inhibits MOB1 function, thereby decreasing phosphorylation of LATS1 and YAP, suppressing Hippo signaling, and promoting HCC tumor growth. The growth-promoting effect of ACTN1 was abrogated by pharmacological YAP inhibition. Co-immunoprecipitation; western blotting for p-LATS1 and p-YAP; ACTN1 knockdown in HCC cells; in vivo xenograft and intrahepatic transplantation models; pharmacological inhibition with verteporfin/super-TDU Journal of experimental & clinical cancer research : CR Medium 33413564
2023 ACTN1 promotes β-catenin signaling in HNSCC by (1) enhancing MYH9 interaction with GSK-3β leading to ubiquitin-dependent GSK-3β degradation, and (2) interacting with integrin β1 to activate the FAK/PI3K/AKT pathway. In addition, the β-catenin/c-Myc axis transcriptionally upregulates ACTN1, forming a positive feedback loop. Co-immunoprecipitation; IP-mass spectrometry; western blotting; dual-luciferase reporter assay; in vitro and in vivo (xenograft and patient-derived xenograft) models Journal of experimental & clinical cancer research : CR Medium 38057867
2023 ACTN1 physically interacts with integrin α5 (ITGA5) as shown by Co-IP, and this interaction promotes proliferation, invasion, migration, and EMT of HNSCC cells; ITGA5 overexpression rescues the suppressive effects of ACTN1 depletion. Co-immunoprecipitation; loss-of-function (siRNA knockdown) and rescue experiments; in vivo xenograft model Iranian journal of basic medical sciences Medium 36742137
2020 Oroxylin A (OA) specifically binds ACTN1 and inhibits its expression in cancer-associated fibroblasts (CAFs), thereby decreasing phosphorylation of FAK and STAT3, and reducing secretion of CCL2, preventing CAF activation and breast cancer metastasis. Drug-target binding assay; western blotting; in vitro CAF activation assay; in vivo tumor metastasis model Pharmacological research Medium 32492489
2011 ACTN1 exists as part of a protein complex with FHL1 and PDLIM1, identified by tandem affinity purification from HEK-293 cells and verified by immunoprecipitation from mouse heart ventricles, with co-localization visualized in adult cardiomyocytes. Tandem affinity purification; LC-MS; immunoprecipitation from mouse heart ventricles; 3D fluorescence microscopy in cardiomyocytes Molecular bioSystems Medium 21246116
2002 ACTN1 undergoes brain-specific alternative splicing combining both smooth muscle (SM) and non-muscle (NM) exons into a novel brain-specific (BS) exon domain, expressed predominantly in adult brain neurons (hippocampus, cortex, caudate putamen), representing a distinct third isoform. RT-PCR; in situ hybridization in rat brain sections; developmental expression analysis Biochemical and biophysical research communications Medium 12099693
2023 LLGL2 interacts with ACTN1 (identified by immunoprecipitation combined with mass spectrometry) and alters the intracellular localization and function of ACTN1 without changing its protein or mRNA levels, thereby impairing actin filament bundling and inhibiting ovarian cancer invasion and metastasis. Immunoprecipitation combined with mass spectrometry; LLGL2 overexpression/knockdown; in vitro migration and invasion assays; in vivo metastasis model Cancers Medium 38136424
2025 USP14 deubiquitinase stabilizes ACTN1 protein by removing its ubiquitin chains; pharmacological inhibition of USP14 reduces ACTN1 protein levels, impairs mesenchymal GBM phenotypes, and suppresses tumor progression in intracranial xenograft models. Ubiquitination assay; USP14 inhibition with IU1; western blotting; in vitro and intracranial xenograft in vivo models Communications biology Medium 41291211
2024 miR-129-5p directly targets the 3'UTR of ACTN1, confirmed by luciferase reporter assay, reducing ACTN1 protein levels under anchorage-independent conditions and suppressing anchorage-independent growth in HPV-transformed keratinocytes. Luciferase reporter assay (3'UTR); RT-qPCR; miR-129-5p overexpression; anchorage-independent growth assay Journal of medical virology Medium 38566572
2025 STAT5A (but not STAT5B) transcriptionally sustains ACTN1 expression; STAT5A knockout reduces ACTN1 levels, collapses F-actin architecture, and impairs mitochondrial morphology/DRP1 recruitment. Ectopic re-expression of ACTN1 in STAT5A-KO cells rescues actin cytoskeleton organization, mitochondrial network morphology, DNA damage, and IFN-β signaling, establishing ACTN1 as the key downstream effector of the STAT5A–actin–mitochondria axis. STAT5A/B knockout; ACTN1 ectopic overexpression rescue in KO background; live-cell imaging; mitochondrial morphology analysis; cGAS-STING/IFN signaling assays; ROS measurement bioRxivpreprint Medium bio_10.1101_2025.05.26.656095
2025 ACTN1 localizes predominantly to focal adhesions in hiPSC-derived cardiomyocytes and is required for focal adhesion maturation and sarcomere assembly. siRNA depletion of ACTN1 disrupted Z-line formation and impaired sarcomere organization; rescue with exogenous ACTN1 but not ACTN2 restored these defects, revealing a non-redundant function. ACTN1 depletion reduced adhesion size, number, and stability of adhesion-associated vinculin. siRNA knockdown; live-cell imaging (vinculin/paxillin dynamics); immunofluorescence; exogenous rescue with ACTN1 vs ACTN2; hiPSC-derived cardiomyocytes bioRxivpreprint Medium bio_10.1101_2025.03.28.645933
2026 PDLIM5 interacts with ACTN1/ACTN4 via its S593/F596 residues, promoting F-actin bundling and filopodia formation in tumor endothelial cells. Endothelial-specific deletion of Pdlim5 disrupts ACTN1/ACTN4-dependent F-actin bundling and impairs sprouting angiogenesis. Co-immunoprecipitation; endothelial-specific Pdlim5 knockout; filopodia and F-actin bundle imaging; in vivo tumor growth and vascular normalization assays Nature communications Medium 41605926
2026 Lobetyolin (LBT) directly targets ACTN1 (chemical proteomics, molecular docking) and enhances ACTN1–F-actin affinity, promoting cortical actin organization and stabilizing intercellular junctions under inflammatory stress in pulmonary endothelial cells. Chemical proteomics (activity-based protein profiling); molecular docking; in vitro endothelial barrier assays; in vivo ALI mouse model; transcriptomics Journal of ethnopharmacology Medium 42202915

Source papers

Stage 0 corpus · 24 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2013 ACTN1 mutations cause congenital macrothrombocytopenia. American journal of human genetics 159 23434115
2014 ACTN1-related thrombocytopenia: identification of novel families for phenotypic characterization. Blood 48 25361813
2020 Oroxylin A suppresses ACTN1 expression to inactivate cancer-associated fibroblasts and restrain breast cancer metastasis. Pharmacological research 46 32492489
2021 ACTN1 supports tumor growth by inhibiting Hippo signaling in hepatocellular carcinoma. Journal of experimental & clinical cancer research : CR 42 33413564
2013 A missense mutation in the alpha-actinin 1 gene (ACTN1) is the cause of autosomal dominant macrothrombocytopenia in a large French family. PloS one 41 24069336
2023 ACTN1 promotes HNSCC tumorigenesis and cisplatin resistance by enhancing MYH9-dependent degradation of GSK-3β and integrin β1-mediated phosphorylation of FAK. Journal of experimental & clinical cancer research : CR 31 38057867
2002 Brain-specific splicing of alpha-actinin 1 (ACTN1) mRNA. Biochemical and biophysical research communications 30 12099693
2011 Identification of an FHL1 protein complex containing ACTN1, ACTN4, and PDLIM1 using affinity purifications and MS-based protein-protein interaction analysis. Molecular bioSystems 27 21246116
2019 Cullin-3 dependent deregulation of ACTN1 represents a new pathogenic mechanism in nemaline myopathy. JCI insight 22 30990797
2015 ACTN1 rod domain mutation associated with congenital macrothrombocytopenia. Annals of hematology 19 26453073
2018 ACTN1 mutations lead to a benign form of platelet macrocytosis not always associated with thrombocytopenia. British journal of haematology 17 30351444
2023 ACTN1 interacts with ITGA5 to promote cell proliferation, invasion and epithelial-mesenchymal transformation in head and neck squamous cell carcinoma. Iranian journal of basic medical sciences 16 36742137
2019 Novel ACTN1 variants in cases of thrombocytopenia. Human mutation 13 31237726
2017 ACTN1-related Macrothrombocytopenia: A Novel Entity in the Progressing Field of Pediatric Thrombocytopenia. Journal of pediatric hematology/oncology 10 28562514
2023 LLGL2 Inhibits Ovarian Cancer Metastasis by Regulating Cytoskeleton Remodeling via ACTN1. Cancers 8 38136424
2018 Familial macrothrombocytopenia due to a double mutation in cis in the alpha-actinin 1 gene (ACTN1), previously considered to be chronic immune thrombocytopenic purpura. Pediatric blood & cancer 6 30124235
2024 ACTN1-related thrombocytopenia: Homozygosity for an ACTN1 variant results in a more severe phenotype. British journal of haematology 3 38594875
2012 Intronic parent-of-origin dependent differential methylation at the Actn1 gene is conserved in rodents but is not associated with imprinted expression. PloS one 2 23145029
2024 miR-129-5p inhibits anchorage-independent growth through silencing of ACTN1 and the ELK4/c-FOS axis in HPV-transformed keratinocytes. Journal of medical virology 1 38566572
2026 Endothelial PDLIM5 promotes tip cell filopodia formation and tumor angiogenesis by regulating ACTN1/ACTN4-dependent actin bundling. Nature communications 0 41605926
2026 Integrative single-cell and bulk RNA sequencing unravels the role of ACTN1 in promoting lung cancer with brain metastasis and epidermal growth factor receptor-tyrosine kinase inhibitor resistance. Frontiers in cell and developmental biology 0 42058147
2026 Lobetyolin reinforces endothelial cytoskeletal integrity to alleviate Pseudomonas aeruginosa-induced acute lung injury via targeting ACTN1. Journal of ethnopharmacology 0 42202915
2025 USP14-mediated stabilization of ACTN1 maintains mesenchymal characteristics in glioblastoma. Communications biology 0 41291211
2022 [Pedigree Analysis of ACTN1-Related Thrombocytopenia Attributed to A Novel Mutation]. Zhongguo shi yan xue ye xue za zhi 0 35395998

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