| 2004 |
VPS33B encodes a homolog of class C yeast vacuolar protein sorting gene Vps33 containing a Sec1-like domain, identifying it as a regulator of SNARE-dependent vesicle-to-target membrane fusion. |
Positional cloning, sequence homology analysis, identification of germline mutations in ARC syndrome patients |
Nature genetics |
High |
15052268
|
| 2005 |
VPS33B is essential for platelet alpha-granule biogenesis in megakaryocytes but not required for granule secretion; VPS33B colocalizes with alpha-granule markers and late endosomes/lysosomes in megakaryocytes, and is absent from platelets themselves. |
Immunofluorescence microscopy, immunoblotting of ARC patient platelets and megakaryocytes, electron microscopy, platelet aggregation assays |
Blood |
High |
16123220
|
| 2005 |
Zebrafish vps33b acts downstream of the hnf6/vhnf1 transcription factor pathway to regulate biliary development; vhnf1 directly binds the vps33b promoter to increase its expression. |
Morpholino knockdown, epistasis analysis, electrophoretic mobility shift assay (EMSA), overexpression in embryos and mammalian liver cells |
Development (Cambridge, England) |
High |
16284120
|
| 2008 |
VPS33B deficiency causes defective lamellar granule secretion in keratinocytes; ultrastructural analysis showed lamellar granules entombed in cornified cells rather than being secreted, indicating VPS33B is required for SNARE-mediated vesicle fusion in epidermal differentiation. |
VPS33B mutation sequencing, ultrastructural electron microscopy of ARC patient skin, mRNA splicing analysis |
Archives of dermatology |
Medium |
18347289
|
| 2012 |
VPS33B interacts with VPS16B (encoded by C14orf133); both proteins colocalize at the trans-Golgi network, late endosomes, and alpha-granules in megakaryocytes, and VPS16B is required for platelet alpha-granule biogenesis. |
Yeast two-hybrid screen, mass spectrometry, coimmunoprecipitation, immunofluorescence microscopy, immunoblotting of ARC patient platelets |
Blood |
High |
23002115
|
| 2012 |
SPE-39 (VIPAS39/VPS16B) undergoes tyrosine phosphorylation and ubiquitination upon EGF stimulation; VPS33B association with SPE-39 inhibits EGF-induced ubiquitination of SPE-39, stabilizing it; SPE-39 and VPS33B have opposing effects on EGF receptor downregulation. |
EGF stimulation assays, immunoprecipitation, ubiquitination assays, overexpression/knockdown in COS-7 cells |
FEBS letters |
Medium |
22677173
|
| 2013 |
VPS33B pathogenic mutations alter subcellular localization of VPS33B to VIPAS39/SPE-39-positive endosomes and some mutants fragment VIPAS39-positive endosomes, implicating VPS33B in VIPAS39-dependent endosomal maturation or fusion. |
Yeast two-hybrid, immunoprecipitation, quantitative fluorescence microscopy |
Human molecular genetics |
Medium |
23918659
|
| 2015 |
VPS33B depletion in HeLa cells causes accumulation of late endosomes in the perinuclear region, impairs cargo degradation, and blocks delivery of endocytosed BSA-gold from late endosomes to lysosomes, indicating VPS33B is required for late endosomal-lysosomal fusion. |
siRNA knockdown, fluorescence microscopy, electron microscopy with BSA-gold endocytosis assay |
Traffic (Copenhagen, Denmark) |
High |
26403612
|
| 2015 |
VPS33B deficiency in a tamoxifen-inducible mouse model causes reduction in platelet alpha-granules, accumulation of large vacuoles in megakaryocytes, reduction in mature type-II multivesicular bodies (MVB II), and a defect in delta-granule secretion and stable aggregate formation under arteriolar shear. |
Tamoxifen-inducible conditional knockout, ultrastructural and immunoelectron microscopy, platelet aggregation assays, tail-bleeding assay, FeCl3 thrombosis model |
Blood |
High |
25947942
|
| 2015 |
VPS33B binds directly to the integrin beta subunit; VPS33B overexpression potentiates αIIbβ3 outside-in signaling (but not inside-out signaling); megakaryocyte/platelet-specific VPS33B knockout mice show impaired spreading on fibrinogen, defective clot retraction, and reduced aggregation, placing VPS33B upstream of RhoA-ROCK-MLC and Rac1-dependent pathways. |
Direct binding assay, CHO cell overexpression, megakaryocyte/platelet-specific conditional knockout mice, platelet spreading, clot retraction, aggregation assays, FeCl3 thrombosis model |
Circulation |
High |
26399659
|
| 2016 |
VPS33B interacts with the GDI2/RAB11A/RAB27A pathway to regulate trafficking of secretory proteins as exosomes in hematopoietic stem cells; VPS33B co-exists in exosomes with GDI2, VPS16B, FLOT1 and other exosome markers. |
VPS33B deletion in mouse and human HSCs, exosome purification and characterization, co-immunoprecipitation, rescue experiments with purified exosomes |
The Journal of clinical investigation |
High |
27797340
|
| 2016 |
Drosophila and mammalian Vps33B are required for maturation of phagosomes and endosomes containing pattern recognition receptors (PRRs) following microbial recognition; loss of Vps33B results in enhanced inflammatory signaling due to failure to clear PRR-containing endosomes, while trafficking of non-microbial cargo is unaffected. |
Drosophila Vps33B mutants, mammalian cell knockdown, phagocytosis assays, inflammatory mediator quantification, endosomal trafficking assays |
Immunity |
High |
27496733
|
| 2016 |
VPS33B associates with VIPAS39, alpha-tubulin, and SEC22B; VIPAS39 binds intact VPS33B while alpha-tubulin and SEC22B interact separately with the Sec1-like domains of VPS33B; Vps33b deficiency disrupts redistribution of Vipas39 and Sec22b to proplatelets and interrupts colocalization of Sec22b with Vwf-positive vesicles in megakaryocytes. |
Coimmunoprecipitation, mass spectrometry, immunoblotting, pull-down assays, conditional knockout mice, immunofluorescence microscopy |
The Journal of pathology |
High |
27319744
|
| 2016 |
VPS33B interacts with Rab11a and Rab25; the p.Gly131Glu ARC/ARKID-causing mutation reduces coimmunoprecipitation and colocalization with Rab11a and Rab25 and fails to rescue trafficking of the collagen-modifying enzyme LH3, linking VPS33B to LH3 trafficking and collagen lysine modification. |
Mutagenesis, coimmunoprecipitation, colocalization microscopy, LH3 trafficking rescue assay, urine/fibroblast collagen modification analysis |
The Journal of investigative dermatology |
High |
28017832
|
| 2017 |
VPS33B interacts with RAB11A at recycling endosomes and is required for trafficking of ABC transporters specifically trafficked via Rab11a-positive recycling endosomes to the hepatocyte apical membrane; Vps33b liver-specific knockout causes mislocalisation of these apical proteins, impaired tight junction integrity, and loss of functional bile secretion. |
Liver-specific conditional knockout mice, bile/plasma mass spectrometry, immunostaining of apical membrane and tight junction proteins, electron microscopy, adeno-associated virus gene rescue |
Journal of hepatology |
High |
28082148
|
| 2018 |
VPS33B and VIPAR (VPS16B) are required for epidermal lamellar body biogenesis; Vps33b and Vipar knockout mice show abnormal lamellar body morphology, disrupted cargo localisation, impaired stratum corneum formation, and reduced corneocyte/cornified envelope integrity. |
Mouse knockouts (Vps33b and Vipar), histology, immunofluorescence, electron microscopy, primary cell isolation |
Biochimica et biophysica acta. Molecular basis of disease |
High |
29409756
|
| 2018 |
VPS33B does not associate with CORVET or HOPS complex subunits but stably interacts with VIPAR; the VPS33B/VIPAR complex is considerably smaller than CORVET/HOPS; VPS33B transiently interacts with CCDC22, a CCC complex member, which does not stably co-fractionate with VPS33B/VIPAR. |
BioID proximity biotinylation proteomics, gel filtration of human cell lysates, co-localization analysis |
Journal of molecular biology |
High |
29778605
|
| 2019 |
VPS33B and VPS16B form a distinct small complex with the same hydrodynamic radius as a recombinant VPS33B-VPS16B heterodimer purified from bacteria; this complex localizes to the recycling endosome in megakaryocytes, which is a key intermediate compartment for alpha-granule biogenesis; VPS33B deficiency causes alpha-granule cargo degradation in lysosomes. |
CRISPR/Cas9 VPS33B knockout in imMKCLs, recombinant protein purification, size-exclusion chromatography, cargo trafficking pulse-chase mapping, GFP-VPS33B rescue |
Blood advances |
High |
31501156
|
| 2019 |
The VPS33B missense variant p.Cys576Arg abolishes interaction with VIPAS39 in vitro, demonstrating the functional importance of this region for VPS33B-VIPAS39 complex formation. |
In vitro binding/coimmunoprecipitation assay with mutant constructs |
Human mutation |
Medium |
31479177
|
| 2020 |
Loss of p38b MAP kinase reduces enhanced inflammatory responses and prolongs survival of Vps33B-deficient Drosophila; p38 MAPK modulates endosomal trafficking of the PGRP-LC innate immune receptor and phagocytosis of bacteria, placing p38b downstream of Vps33B in the regulation of innate immune endosomal trafficking. |
Drosophila genetic epistasis (Vps33B mutant x p38b mutant), survival assays, constitutively active/dominant negative p38b expression, endosomal trafficking assays, phagocytosis assays |
Traffic (Copenhagen, Denmark) |
Medium |
32677257
|
| 2022 |
VPS16B/VPS33B complex physically associates with Syntaxin 12 (Stx12), a SNARE protein mediating vesicle fusion at endosomes; Stx12 deficiency reduces alpha-granule numbers and alpha-granule protein levels in megakaryocytes; VPS16B/VPS33B also binds CCDC22 (CCC complex), and CCDC22 competes with Stx12 for binding to VPS16B/VPS33B, suggesting a hand-off mechanism at endosomes. |
Co-immunoprecipitation, CRISPR knockout of Stx12 and COMMD3/CCDC22 in megakaryocytes, immunofluorescence, flow cytometry, electron microscopy |
Blood |
High |
34905616
|
| 2022 |
Vps33B binds with the lysosomal nutrient-sensing complex (LYNUS) and promotes late endosome-lysosome fusion and clearance of LYNUS-containing late endosomes, thereby suppressing mTORC1 activation; Vps33B deficiency in Treg cells leads to disordered endolysosomal fusion, LYNUS accumulation, elevated mTORC1 activation, and hyper-glycolytic metabolism. |
Treg-specific conditional knockout mice, mTORC1 activity assays, endosomal trafficking assays, metabolic profiling, co-immunoprecipitation |
Cell reports |
High |
35705052
|
| 2022 |
Stable expression of VPS16B in platelets and megakaryocytes is dependent on VPS33B; loss of VPS33B results in loss of both VPS33B and VPS16B protein expression. |
Immunoblotting of platelets from ARC patients with VPS33B nonsense variant, protein expression analysis |
Journal of thrombosis and haemostasis : JTH |
Medium |
35325493
|
| 2023 |
Human VPS33B-VPS16B forms a high molecular weight complex (~315 kDa) with a VPS33B:VPS16B stoichiometry of approximately 2:3; the complex has a two-lobed shape with one VPS33B molecule at each end oriented in opposite directions; truncated VPS16B (aa 143-316) is sufficient for complex formation; the ARC-causing L30P mutation disrupts complex formation while S243F and H344D do not. |
Yeast expression of recombinant complex, circular dichroism, size-exclusion chromatography-MALS, quantitative immunoblotting, small-angle X-ray scattering, negative-stain electron microscopy, avidin tagging, mutagenesis of ARC variants |
The Journal of biological chemistry |
High |
37062417
|
| 2023 |
METTL16 methyltransferase induces m6A modification of VPS33B mRNA, impairing VPS33B transcript stability and thereby reducing VPS33B protein levels; this promotes osteosarcoma progression through the PI3K/AKT pathway. |
m6A profiling, METTL16 knockdown/overexpression, mRNA stability assays, VPS33B knockdown rescue experiments, in vivo tumor growth |
Journal of cellular physiology |
Medium |
37357526
|
| 2026 |
VPS33B knockout in proximal tubular epithelial cells (RPTEC-TERT1) causes a 'peeling' phenotype with altered cell adhesion and cell-matrix attachment defects, accompanied by transcriptional changes in adhesion-related genes. |
CRISPR/Cas9 knockout, brightfield imaging, immunostaining, RNA sequencing, cell detachment assays |
PloS one |
Medium |
41686830
|