| 2010 |
Crystal structure of human UBA5 bound to ATP revealed that the catalytic cysteine (Cys250) is located within the adenylation domain in an alpha-helical motif, unlike other E1 enzymes where the active-site cysteine is in a separate flexible domain. Conformational changes associated with ATP binding provide insight into ubiquityl-enzyme thioester formation. |
X-ray crystallography with structural comparison to canonical E1 enzymes |
The Journal of biological chemistry |
High |
20368332
|
| 2014 |
UBA5 activates UFM1 via a two-step mechanism forming a binary covalent UBA5~UFM1 thioester (contrasting with Uba1's three-step ternary mechanism). UBA5 shows random ordered binding with UFM1 and ATP. Binding of ATP to the UBA5~UFM1 thioester is required for efficient transthiolation of UFM1 to UFC1. The pan-E1 inhibitor adenosine 5'-sulfamate (ADS) reacts with the UBA5~UFM1 thioester to form a tight-binding Ufm1-ADS adduct. |
In vitro thioester formation assay, ATP-PPi exchange assay, mechanism-based inhibitor studies, cellular assays in HCT116 cells |
The Journal of biological chemistry |
High |
24966333
|
| 2016 |
Crystal structure of the homodimeric UBA5 in complex with UFM1 revealed a trans-binding mechanism: UFM1 interacts with distinct sites on both subunits of the UBA5 dimer, requiring the C-terminal region to bring UFM1 to the active site of the adjacent subunit. Transfer of UFM1 from UBA5 to UFC1 (E2) also occurs via a trans mechanism requiring a UBA5 homodimer. |
X-ray crystallography of UBA5-UFM1 complex, supporting biochemical experiments |
Cell reports |
High |
27653677
|
| 2016 |
A combined LIR/UFIM motif at the C-terminus of UBA5 enables binding to both UFM1 and LC3/GABARAP proteins. This motif is required for full biological activity of UBA5 and for effective transfer of UFM1 onto UFC1 and downstream substrate proteins, both in vitro and in cells. |
NMR structure determination, binding assays, in vitro transfer assays, cellular functional assays with mutagenesis |
The Journal of biological chemistry |
High |
26929408
|
| 2017 |
Crystal structure of UFM1 fused to 13 amino acids of human UBA5 refined the UFM1-interacting sequence (UIS) boundaries. His336 of UBA5, not previously identified as part of the UIS, occupies a negatively charged pocket on UFM1's surface and is required for UFM1 binding and activation when mutated. A UFM1-UFM1 interaction was found to mimic UIS binding. |
X-ray crystallography, binding assays, UFM1 activation activity assays with mutagenesis |
Scientific reports |
High |
28360427
|
| 2018 |
Trans-binding of UFM1 to UBA5 stabilizes the UBA5 homodimer, and UBA5 dimerization is required for ATP binding. UFM1 binding therefore enhances UBA5 affinity for ATP, establishing a regulatory connection between UFM1 engagement and ATP binding by UBA5. |
Biochemical binding and activity assays, biophysical analysis of dimerization |
FASEB journal |
Medium |
29295865
|
| 2018 |
The N-terminal extension present in the longer UBA5 isoform directly participates in ATP binding and changes the stoichiometry from 1:2 to 1:1 (ATP:UBA5), significantly increases UBA5 affinity for ATP, and stimulates transfer of UFM1 from UBA5 to UFC1 despite not being directly involved in E2 binding. |
Crystal structures of long UBA5 isoform ± UFM1 with ATP, biochemical ATP binding and UFM1 transfer assays |
Journal of molecular biology |
High |
30412706
|
| 2019 |
The non-canonical LIR motif of UBA5 preferentially interacts with GABARAP over LC3 proteins via an additional conserved tryptophan binding into a novel hydrophobic pocket (HP0) on GABARAP surface, with K/R47 in GABARAP as the key specificity residue. GABARAP proteins regulate UBA5 localization and function on the endoplasmic reticulum membrane in a lipidation-independent manner. |
NMR and X-ray crystal structures of GABARAP/GABARAPL2-UBA5 LIR complexes, swapping mutagenesis, isothermal titration calorimetry, live cell imaging/fractionation |
Autophagy |
High |
30990354
|
| 2021 |
Crystal structure of UFC1 bound to the C-terminus of UBA5 revealed a short linear sequence mediating the UBA5-UFC1 interaction not observed in other E1-E2 complexes. A region outside the adenylation domain of UBA5 is dispensable for UFC1 binding but critical for UFM1 transfer, moving next to UFC1's active-site Cys to compensate for a missing loop in UFC1. |
X-ray crystallography of UBA5 C-terminus–UFC1 complex, biochemical UFM1 transfer assays with truncation/mutagenesis |
Nature communications |
High |
34588452
|
| 2021 |
The last 20 residues of the C-terminal unstructured region of UBA5 are pivotal for binding to UFC1 and accelerate UFM1 transfer to UFC1. NMR structure of UFC1 bound to the last 20 residues of UBA5 revealed the molecular basis of this interaction. |
NMR spectroscopy of UFC1-UBA5 C-terminal peptide complex, isothermal titration calorimetry, biochemical transfer assays |
International journal of molecular sciences |
High |
34299007
|
| 2021 |
UFM1 regulates the oligomeric state of UBA5: mixtures of homodimers and heterotrimers are observed in solution, with the UBA5-UFM1 complex undergoing concentration-dependent oligomeric transitions. UBA5 alone transitions from monomeric to dimeric in a concentration-dependent manner with negative cooperativity in complex formation. |
Small-angle X-ray scattering (SAXS), binding studies, biophysical characterization of oligomeric states |
Journal of structural biology |
Medium |
34508858
|
| 2022 |
Overexpression of UBA5 (but not UFC1) reverses the trans-thiolation reaction, causing back-transfer of UFM1 from UFC1 to UBA5, thereby reducing charged UFC1 levels and impairing ufmylation. This overexpression phenocopies UBA5 or UFC1 loss in impairing cell migration. Co-expression with UFM1 abolishes the back-transfer, indicating that free UFM1 concentration controls directionality. |
Biochemical thioester assays, cell migration assays with overexpression and knockout lines |
International journal of molecular sciences |
Medium |
35806453
|
| 2011 |
Uba5 is the specific E1-activating enzyme for UFM1 and is indispensable for erythroid differentiation in mice. Genetic loss of Uba5 impairs development of megakaryocyte and erythroid progenitors from common myeloid progenitors, causing severe anemia and embryonic death. Transgenic erythroid-specific re-expression of Uba5 rescued anemia, demonstrating cell-autonomous function. |
Conditional knockout mouse model, transgenic rescue, colony-forming assays |
Nature communications |
High |
21304510
|
| 2016 |
UBA5 mutations causing early-onset encephalopathy impair ufmylation and result in abnormal endoplasmic reticulum structure in patient fibroblasts. In C. elegans, knockout of uba-5 and UFM1 cascade orthologs alters cholinergic but not glutamatergic neurotransmission. In zebrafish, uba5 silencing decreases motility and induces seizure-like movements. |
Biochemical ufmylation assays in patient fibroblasts, C. elegans knockout behavioral assays, zebrafish morpholino knockdown |
American journal of human genetics |
Medium |
27545681
|
| 2016 |
The UBA5 p.Ala371Thr variant is hypomorphic, with attenuated ability to transfer activated UFM1 to UFC1 as shown by in vitro thioester formation assay. CNS-specific knockout of Ufm1 in mice causes neonatal death with microcephaly and apoptosis in specific neurons. |
In vitro thioester formation assay, conditional CNS Ufm1 knockout mouse model |
American journal of human genetics |
High |
27545674
|
| 2016 |
UBA5-R246X mutation dramatically decreases protein half-life and abolishes UFM1 activation due to loss of the catalytic Cys250. UBA5-K310E maintains UFM1 interaction with reduced stability. In Drosophila, UBA5 knockdown induces locomotor defects, shortened lifespan, and aberrant neuromuscular junctions; wild-type but not mutant UBA5 restores neural lesions. |
Protein stability assays, UFM1 activation assays, Drosophila genetic rescue with wild-type vs. mutant UBA5 |
PloS one |
Medium |
26872069
|
| 2008 |
UBA5 (UBE1DC1) activates not only UFM1 but also SUMO2 in vitro and in vivo by forming a high-energy thioester bond. UBA5 localizes predominantly to the cytoplasm, but redistributes to the nucleus upon co-transfection with SUMO2. |
In vitro thioester assay, in vivo co-immunoprecipitation, immunofluorescence subcellular localization in AD293 cells |
Journal of cellular biochemistry |
Low |
18442052
|
| 2017 |
A covalent ligand (DKM 2-93) that modifies the catalytic cysteine of UBA5 inhibits its activity as an E1 enzyme for UFM1, impairs pancreatic cancer cell survival, and reduces in vivo tumor growth, identifying UBA5 catalytic cysteine as a druggable hotspot. |
isoTOP-ABPP chemoproteomic platform, covalent ligand screening, in vitro activity assays, cell viability assays, xenograft tumor models |
ACS chemical biology |
High |
28186401
|
| 2023 |
Systematic biochemical assays across UBA5 disease variants established an allelic series with mild, intermediate, and severe loss-of-function grades based on protein stability, ATP binding, UFM1 activation, and UFM1 transthiolation. In vivo Drosophila phenotypes (viability, lifespan, locomotion) strongly correlate with in vitro biochemical severity. |
Comprehensive in vitro biochemical assays (thermal stability, ATP binding, UFM1 charging, transthiolation), humanized Drosophila UBA5 model |
eLife |
High |
38079206
|
| 2026 |
UBA5 loss disrupts mitochondrial quality control: UBA5-deficient cells accumulate damaged mitochondria and increased ROS. The PINK1-Parkin damage response is engaged but mitophagy execution is inefficient, resulting in impaired clearance of dysfunctional mitochondria, p53 activation, DNA damage responses, p21-associated G2/M arrest, and early apoptosis. |
UBA5 knockout cells, mitochondrial morphology assays, ROS measurement, mitophagy flux assays, cell cycle analysis, apoptosis assays |
Biological research |
Medium |
41645284
|
| 2025 |
UFMylation downstream of UBA5 promotes non-homologous end-joining (NHEJ) DNA double-strand break repair. Ku70 is identified as a UFMylation substrate; UFMylated Ku70 is recognized by XRCC4 to promote chromatin assembly of NHEJ factors. Perturbation via a hypomorphic UBA5 allele in patient-derived fibroblasts impairs these processes. |
Photo-crosslinkable UFM1 probe, high-resolution NMR, proximity-dependent proteomics, patient-derived fibroblast functional assays, UFSP2 depletion |
bioRxivpreprint |
Medium |
bio_10.1101_2025.06.16.659844
|
| 2025 |
UBA5 function is required for orthoflavivirus (dengue, Zika, West Nile, yellow fever) replication. UFMylation pathway components including UBA5 are selectively recruited to viral replication sites; UFMylation promotes mitochondrial respiration in this context. Pharmacological inhibition of UFMylation reduces viral replication in vitro and in vivo. |
Proteomic interaction mapping, siRNA knockdown of UFMylation components, pharmacological inhibition, in vitro and in vivo viral replication assays |
bioRxivpreprint |
Low |
bio_10.1101_2025.05.15.653649
|
| 2025 |
Patient-derived cortical organoids with compound heterozygous UBA5 pathogenic variants show defects in GABAergic interneuron development, aberrant neuronal firing, and reduced organoid size. ER homeostasis is perturbed and the unfolded protein response pathway is exacerbated in cells and organoids expressing UBA5 pathogenic variants. |
Patient-derived cortical organoid culture, single-cell RNA sequencing, electrophysiology, UPR pathway assays |
Science translational medicine |
Medium |
40333994
|
| 2014 |
UBA5 residues 381–404 constitute the minimal region for UFC1 recognition, while residues 364–404 are necessary for transthiolation of UFM1 to UFC1. The UBA5–UFC1 fusion protein exists as a homodimer in solution. |
Truncation assays, protein biochemistry, crystallization/preliminary X-ray analysis |
Acta crystallographica Section F |
Medium |
25084390
|