| 2000 |
Suv39h2 encodes a histone H3 lysine 9-selective methyltransferase (HMTase) that shares 59% identity with Suv39h1 but differs by the presence of a highly basic N terminus. Immunolocalization during spermatogenesis showed enriched distribution at heterochromatin from leptotene to round spermatid stage, and specific accumulation with sex chromosome chromatin (XY body) undergoing meiotic silencing. |
In vitro HMTase activity assay, immunolocalization/immunofluorescence during spermatogenesis, FISH chromosomal mapping |
Molecular and cellular biology |
High |
11094092
|
| 2003 |
Suv39h1 and Suv39h2 govern H3K9 di- and trimethylation at telomeric heterochromatin. Loss of both enzymes (SUV39DN cells) results in reduced di/trimethylated H3K9 and increased monomethylated H3K9 at telomeres, concomitant with reduced binding of HP1 homologs (Cbx1, Cbx3, Cbx5) at telomeres and abnormal telomere elongation. |
Chromatin immunoprecipitation (ChIP) in SUV39DN double-knockout primary cells, telomere length analysis |
Nature genetics |
High |
14702045
|
| 2014 |
SUV39H2 recognizes a long substrate motif on histone H3 comprising residues T6–K14, with highly specific readout of R8, S10, T11, and G12. Modification of R8 or phosphorylation of S10/T11 reduces/abolishes activity. The enzyme prefers unmethylated H3K9me0 as substrate over H3K9me1/me2 and introduces the first two methyl groups processively; the trimethylation step is much slower. The N324K missense mutation in the SET domain (causing inherited nasal skin disease in Labrador Retrievers) renders SUV39H2 catalytically inactive and causes slight structural changes detected by circular dichroism. |
Peptide SPOT array methylation, in vitro methylation assays with SET domain, circular dichroism spectroscopy, active-site mutagenesis |
Biochimica et biophysica acta |
High |
25459750
|
| 2013 |
A missense variant (c.972T>G, p.N324K) in the catalytically active SET domain of SUV39H2 causes hereditary nasal parakeratosis (HNPK) in Labrador Retrievers with autosomal recessive inheritance. The phenotype reflects delayed terminal differentiation of keratinocytes rather than hyperproliferation, implicating SUV39H2-mediated H3K9 methylation in epigenetic regulation of keratinocyte differentiation. |
GWAS, whole genome sequencing, cohort genotyping (>500 dogs), histopathological analysis of epidermis |
PLoS genetics |
Medium |
24098150
|
| 2015 |
SUV39H2 trimethylates LSD1 on lysine 322 (a non-histone substrate). This methylation suppresses LSD1 polyubiquitination and proteasomal degradation, thereby stabilizing LSD1 protein. SUV39H2 knockdown decreases LSD1 protein levels without affecting LSD1 mRNA, and SUV39H2 overexpression indirectly affects LSD1 target gene expression. |
In vitro methylation assay, co-immunoprecipitation, mass spectrometry, siRNA knockdown with protein and mRNA quantification |
Oncotarget |
Medium |
26183527
|
| 2015 |
Alternative splicing of SUV39H2 exon 3 is a determinant of protein stability, sub-nuclear localization, and HMTase activity. Inclusion of exon 3 changes SUV39H2 function, and genome-wide expression analysis showed that the two splice isoforms differentially regulate target gene expression. |
RT-PCR isoform analysis across tissues/cell lines, functional assays (stability, nuclear localization by imaging, HMTase activity assay), genome-wide expression profiling |
Nucleic acids research |
Medium |
25605796
|
| 2016 |
SUV39H2 undergoes automethylation at lysine 392 both in vitro and in cells. Automethylation impairs SUV39H2 binding affinity to substrate proteins (histone H3 and LSD1), and hyper-automethylated SUV39H2 shows reduced methyltransferase activity toward these substrates. |
In vitro methylation assay, co-immunoprecipitation binding assays, in-cell automethylation detection |
Oncotarget |
Medium |
26988914
|
| 2016 |
NEGATIVE FINDING: SUV39H2 (and its homolog SUV39H1) failed to methylate H2AX at K134 or any other lysine in vitro using H2AX protein and peptides under conditions where positive controls were functional. This challenges the prior report that SUV39H2 methylates H2AX-K134 to stimulate γ-H2AX during DNA damage response. |
In vitro methylation reactions with H2AX protein and peptides, positive control validation |
FEBS letters |
Medium |
27177470
|
| 2017 |
Suv39h2 binds to the Sirt1 gene promoter in hepatocytes and represses Sirt1 transcription by catalyzing H3K9 trimethylation at that locus. Suv39h2 deficiency normalizes Sirt1 expression, allowing NF-κB/p65 to become hypoacetylated, dampening NF-κB-dependent proinflammatory transcription. In macrophages, Suv39h2-mediated repression of PPARγ transcription favors a proinflammatory M1 phenotype. |
ChIP assay at Sirt1 promoter, Suv39h2 knockout mouse model (NASH), gene expression analysis, cell culture knockdown/overexpression |
Hepatology (Baltimore, Md.) |
Medium |
28244120
|
| 2017 |
Suv39h2 represses SIRT1 expression in hepatocytes by stimulating H3K9 trimethylation at the SIRT1 promoter, contributing to steatosis pathogenesis. This was confirmed in a methionine-and-choline deficient diet mouse model where Suv39h2 KO mice showed improved steatosis and upregulated SIRT1. |
ChIP at SIRT1 promoter, Suv39h2 knockout mouse (MCD diet model), qPCR, histological staining |
Biochemical and biophysical research communications |
Medium |
28232186
|
| 2018 |
SUV39H2 directly binds to the SLIT1 promoter and suppresses SLIT1 transcription by catalyzing H3K9 trimethylation at that locus in colorectal cancer cells. Rescue assays confirmed SLIT1 can antagonize SUV39H2-driven proliferation and metastasis. |
ChIP assay at SLIT1 promoter, siRNA knockdown, overexpression, in vitro and in vivo proliferation/metastasis assays, rescue experiments |
Cancer letters |
Medium |
29458143
|
| 2018 |
A series of imidazo[1,2-a]pyridine compounds inhibit SUV39H2 methyltransferase activity in vitro. The compound OTS193320 decreases global H3K9 trimethylation in breast cancer cells and triggers apoptosis. A further optimized compound OTS186935 inhibits tumor growth in xenograft models (MDA-MB-231 and A549) and reduces γ-H2AX levels when combined with doxorubicin. |
In vitro methyltransferase inhibition assay, cell viability assay, global H3K9me3 quantification, in vivo xenograft mouse model |
Oncotarget |
Medium |
30159125
|
| 2021 |
A rare loss-of-function variant A211S in SUV39H2 found in ASD individuals shows strongly reduced H3K9 methyltransferase activity in vitro. Suv39h2 KO mice display hyperactivity and reduced behavioral flexibility. Suv39h2 deficiency causes elevated expression of protocadherin β (Pcdhb) cluster genes in embryonic brain due to loss of H3K9me3 at Pcdhb gene promoters, which persists into adulthood in the cerebellum. |
In vitro HMTase activity assay of variant protein, Suv39h2 KO mouse behavioral assays, ChIP-seq/ChIP for H3K9me3 at Pcdhb promoters, RNA-seq |
Molecular psychiatry |
High |
34262135
|
| 2021 |
SUV39H2 maintains epidermal stem and progenitor cells by placing H3K9me3 repressive marks on promoters of genes encoding components of the Wnt/p63/adhesion axis. Loss of SUV39H2 function relieves this repression, causing enhanced Wnt activity that drives premature progenitor cell cycle exit, exhaustion of stem cell growth potential, and compromised epidermal differentiation and genome stability. |
Spontaneous loss-of-function dog model (monogenic inheritance), pharmacological Wnt activation in primary keratinocytes (canine, human, mouse), H3K9me3 ChIP at specific promoters, cell cycle and differentiation assays |
The Journal of cell biology |
High |
33604655
|
| 2021 |
SUV39H2 transcript and protein are highly expressed in rat trophoblast stem (TS) cells in the stem state and decline upon differentiation. SUV39H2 knockdown arrests TS cell proliferation and activates trophoblast differentiation. SUV39H2 regulates H3K9 methylation status at loci with differentiation-dependent gene expression. SUV39H2 is a downstream target of caudal type homeobox 2 (CDX2), a master regulator of trophoblast lineage development. |
Loss-of-function (siRNA) in rat TS cells and ex vivo blastocysts, H3K9 methylation ChIP at specific loci, ChIP for CDX2 at SUV39H2 locus, differentiation marker assays |
Biochimica et biophysica acta. General subjects |
Medium |
33556426
|
| 2021 |
In the adult hippocampus, Suv39h1 and Suv39h2 are highly expressed at early neurogenic stages and decline upon differentiation. Pharmacological inhibition (chaetocin) reduces H3K9me3 and decreases neuronal differentiation while increasing proliferation of adult hippocampal progenitors. Retrovirus-mediated knockdown of Suv39h1/2 in newborn cells of adult mouse dentate gyrus impairs neuronal differentiation of progenitor cells. |
Pharmacological inhibition (chaetocin), retrovirus-mediated RNAi in adult mouse dentate gyrus, immunohistochemistry for H3K9me3 and differentiation markers |
Frontiers in cell and developmental biology |
Medium |
35096813
|
| 2021 |
SUV39H2 positively regulates LSD1 expression, and LSD1 in turn negatively regulates CDH1 (E-cadherin) expression in osteosarcoma. SUV39H2 overexpression or LSD1 overexpression promotes EMT (reduced E-cadherin, upregulated Vimentin and N-cadherin) and migration, effects reversed by CDH1 restoration. |
Loss- and gain-of-function assays, immunofluorescence for EMT markers, in vivo osteosarcoma mouse model, rescue experiments |
Cancer cell international |
Low |
33397384
|
| 2023 |
SUV39H2 methylates PPP1CA (protein phosphatase 1 catalytic subunit alpha) at K141 (mono-methylation). This methylation disrupts PPP1CA interaction with TFEB, blocking TFEB dephosphorylation and nuclear translocation, leading to autophagy deficiency and NPC senescence. PPP1R9B (a PP1 regulatory subunit) binds PPP1CA and facilitates TFEB targeting, and this interaction is also disrupted by K141 methylation. Proteomic analysis identified SUV39H2 as the writer of this mark. |
Proteomic analysis, in vitro methylation assay, co-immunoprecipitation, nuclear translocation assays, autophagy flux assays, cellular senescence assays, in vivo IVD model |
Cell death and differentiation |
Medium |
37605006
|
| 2023 |
METTL3-mediated m6A modification of SUV39H2 mRNA promotes its stability in an IGF2BP2-dependent manner in gastric cancer cells. SUV39H2 represses DUSP6 transcription via H3K9 trimethylation at the DUSP6 locus, increasing ATM phosphorylation and promoting homologous recombination repair, thereby inhibiting cisplatin sensitivity. |
m6A-seq/MeRIP, RNA stability assay, ChIP at DUSP6 locus, ATM phosphorylation assays, HR repair assay, siRNA knockdown, in vivo tumor model |
Cancer letters |
Medium |
36806557
|
| 2024 |
Suv39h2 represses Vanin-1 (Vnn1) transcription in hepatocytes exposed to free fatty acids. Hepatocyte-specific Suv39h2 deletion (Suv39h2f/f × Alb-Cre) de-represses Vanin-1, and Vanin-1 knockdown normalizes lipid accumulation in Suv39h2-null hepatocytes, placing the Suv39h2-Vanin-1 axis in hepatic lipid metabolism. |
Conditional hepatocyte-specific Suv39h2 KO mouse, RNA-seq, Vanin-1 knockdown rescue assay, lipid accumulation assays |
Life sciences |
Medium |
38401627
|
| 2025 |
SUV39H2 catalyzes H3K9me3 at viral promoter regions (of ICP0, ICP4, ICP8) of oncolytic HSV-1, repressing viral gene transcription. oHSV-1 infection induces proteasomal degradation of SUV39H2 through viral protein ICP0, relieving this repression and allowing viral replication. |
CRISPR/Cas9 genome-wide library screen, ChIP at viral promoters, siRNA knockdown and overexpression functional assays, SUV39H2 inhibitor (OTS186935) in vitro/in vivo, proteasomal pathway inhibition |
Cell death discovery |
Medium |
40849299
|
| 2024 |
In Suv39h2 KO mouse embryonic stem cells, rapid depletion of remaining H3K9me3 KMTs reveals that both passive dilution and active removal contribute to H3K9me3 decay within 12–24 hours. HP1 rapidly dissociates from heterochromatin upon KMT depletion, and a threshold level of HP1 limits pioneer factor binding, chromatin opening, and exit from pluripotency. |
Engineered Suv39h2 KO ESCs with auxin-inducible degron for remaining KMTs, ChIP-seq for H3K9me3, ATAC-seq, live imaging of HP1 dynamics, time-course experiments |
bioRxivpreprint |
Medium |
|
| 2025 |
At human centromeres, SUV39H1/2 complete H3K9 trimethylation (while SETDB1 is required for H3K9 dimethylation at core centromeres). Depleting all three enzymes results in aberrantly high H3K9me3 driven by G9a/GLP methyltransferases that promiscuously deposit H3K9me3 within the centromere core, causing CENP-A expansion into pericentromeres. |
siRNA/CRISPRi depletion of SUV39H1, SUV39H2, and SETDB1; H3K9me ChIP-seq; CENP-A localization assays |
bioRxivpreprint |
Low |
|