Affinage

PPP1R9B

Neurabin-2 · UniProt Q96SB3

Length
817 aa
Mass
89.3 kDa
Annotated
2026-06-10
64 papers in source corpus 3 papers cited in narrative 6 extracted findings
Cross-family judge vs UniProt: Affinage preferred faithfulness: 3/3 claims corpus-supported (100%)

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

PPP1R9B (spinophilin/neurabin-2) is a scaffolding protein that targets the catalytic phosphatase PP1a (PPP1CA) to specific substrates, thereby coupling phosphatase activity to cell cycle control, translational regulation, and synaptic and cytoskeletal organization (PMID:26387546, PMID:33537097). As a PP1 regulatory subunit it directs dephosphorylation of the retinoblastoma pocket proteins pRb, p107, and p130 during G0/G1 and G1; loss of PPP1R9B or a tumor-derived point mutation (SPN-A566V) that disrupts the SPN-PP1 interaction sustains pocket-protein phosphorylation and promotes cancer stem-like properties, an effect that is amplified together with mutant p53 (PMID:26387546, PMID:33537097). Substrate selection by the PP1-spinophilin holoenzyme depends on substrate engagement of the PDZ domain adjoining its RVxF-ΦΦ-R-W motif rather than remodeling of the PP1 catalytic groove, which extends its substrate repertoire to the translational regulators 4E-BP1 and p70 S6K and links it to mTORC1-dependent translational control. Beyond its phosphatase-targeting role, spinophilin maintains cortical F-actin organization required for NK-cell immunological synapse formation and target conjugation (PMID:19130477), and in striatal neurons it mediates agonist-induced D2 dopamine receptor internalization, shaping locomotor responses to D2R agonists.

Mechanistic history

Synthesis pass · year-by-year structured walk · 5 steps
  1. 2009 Medium

    Established that spinophilin acts as a cytoskeletal regulator in immune cells, not solely in neurons, by showing it organizes cortical F-actin at the NK immunological synapse.

    Evidence Confocal live imaging, shRNA knockdown, and F-actin staining with CD18/CD28 stimulation in the YTS NK-like cell line

    PMID:19130477

    Open questions at the time
    • Molecular link between spinophilin and the actin machinery not defined
    • Whether PP1 targeting is involved in this role untested
    • Single cell line, no in vivo validation
  2. 2015 Medium

    Connected spinophilin to cell-cycle and cancer biology by showing it directs PP1a-mediated dephosphorylation of pRb, with loss driving cancer stemness.

    Evidence Reciprocal shRNA knockdown/overexpression, PPP1CA knockdown, flow cytometry and qRT-PCR in breast cancer lines and tumor samples

    PMID:26387546

    Open questions at the time
    • No structural basis for substrate targeting
    • Single lab, no independent replication
    • Direct PP1-spinophilin-pRb complex not biochemically reconstituted
  3. 2021 Medium

    Resolved that the PP1-spinophilin holoenzyme regulates the cell cycle through phosphatase activity on pocket proteins, using a tumor mutation that separates complex assembly from catalysis.

    Evidence SPN-A566V mutational analysis, co-immunoprecipitation, phosphatase assays, and cell cycle/stemness assays in MCF10A, T47D, MDA-MB-468

    PMID:33537097

    Open questions at the time
    • Cooperativity with mutant p53 mechanistically undefined
    • In vivo tumorigenicity not tested
    • Single lab
  4. 2024 Medium

    Defined the biochemical logic of substrate selection, showing PDZ-domain engagement rather than catalytic-groove remodeling determines targeting, and added 4E-BP1/p70 S6K to the substrate repertoire.

    Evidence PP1-PIP fusion proteins, in vitro phosphatase assays, and structural experiments (preprint)

    Open questions at the time
    • Preprint, not peer-reviewed
    • Cellular consequence for mTORC1 signaling not demonstrated in vivo
    • Fusion-protein constructs may not reflect native holoenzyme
  5. 2025 Low

    Provided in vivo evidence that spinophilin mediates D2 dopamine receptor internalization and shapes locomotor responses, and catalogued a large spinophilin interactome enriched in mRNA processing/translation factors.

    Evidence Spinophilin knockout mice with locomotion assays and quinpirole interaction proteomics; Ultra-ID proximity labeling and nanobody pulldown in HEK293 (preprints)

    Open questions at the time
    • Preprints, single lab, awaits peer review
    • Direct D2R-spinophilin binding interface not mapped
    • Interactome hits largely uncharacterized at the mechanistic level

Open questions

Synthesis pass · forward-looking unresolved questions
  • How spinophilin integrates its distinct roles—PP1 substrate targeting, actin organization, receptor trafficking, and local translation—within a single cell type remains unresolved.
  • No unifying model linking scaffolding domains to context-specific functions
  • Tissue-specific substrate repertoire undefined
  • Structural model of the native holoenzyme on physiological substrates lacking

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0060090 molecular adaptor activity 3 GO:0140096 catalytic activity, acting on a protein 3 GO:0098772 molecular function regulator activity 2 GO:0008092 cytoskeletal protein binding 1
Localization
GO:0005856 cytoskeleton 1
Pathway
R-HSA-1640170 Cell Cycle 2 R-HSA-392499 Metabolism of proteins 1
Complex memberships
PP1-spinophilin holoenzyme

Evidence

Reading pass · 6 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2015 Spinophilin (PPP1R9B) loss reduces PP1a (PPP1CA) phosphatase activity against the retinoblastoma protein (pRb), thereby maintaining higher levels of phosphorylated pRb. Knockdown of PPP1R9B by shRNA increased cancer stemness properties (Sox2, KLF4, Nanog, OCT4 expression; CD44+/CD24- cells), while ectopic overexpression reduced these properties. Reduction of PPP1CA levels mimicked the cancer stem-like cell phenotype of PPP1R9B downregulation, establishing that the mechanism operates through PP1a. shRNA knockdown, ectopic overexpression, PPP1CA knockdown, flow cytometry (CD44/CD24), qRT-PCR, Western blot in breast cancer cell lines and human tumor samples Oncogene Medium 26387546
2009 PPP1R9B (neurabin 2/spinophilin) is a cytoskeletal component of NK cells that accumulates at the NK immunological synapse (NKIS) in a maturation stage-dependent manner, mimics early actin kinetics at the NKIS, is recruited by CD18 stimulation but not CD28 ligation, is required for maintenance of cortical F-actin organization, and its knockdown reduces YTS-target cell conjugation frequency due to collapsed F-actin cytoskeleton. Confocal live imaging of NKIS assembly, shRNA knockdown, CD18/CD28 stimulation assays, F-actin staining in YTS NK-like cell line European journal of immunology Medium 19130477
2021 A point mutation in PPP1R9B found in human tumors (SPN-A566V) disrupts both the SPN-PP1 interaction and its phosphatase activity, but does not prevent PP1-SPN holoenzyme interaction with pocket proteins pRb, p107, and p130; however, it impairs dephosphorylation of these pocket proteins during G0/G1 and G1, indicating that the PP1-SPN holoenzyme regulates cell cycle progression. SPN-A566V also promoted stemness, and cells with both SPN-A566V and mutant p53 showed increased tumorigenic and stemness properties. Mutational analysis, co-immunoprecipitation, phosphatase activity assays, cell cycle analysis, stemness assays in MCF10A, T47D, and MDA-MB-468 cell lines Theranostics Medium 33537097
2024 PP1-Neurabin (PPP1R9B) and PP1-Spinophilin holoenzymes dephosphorylate 4E-BP1 and p70 S6K translational regulators as substrates. In contrast to Phactr PIPs, substrate recruitment and catalytic efficiency of PP1-Neurabin/Spinophilin fusions is primarily determined by substrate interaction with the PDZ domain adjoining the RVxF-ΦΦ-R-W motif, rather than by remodeling of the PP1 hydrophobic substrate groove, pointing to a role in mTORC1-dependent translational control. PP1-PIP fusion protein approach, in vitro phosphatase assays, biochemical substrate identification, structural experiments bioRxivpreprint Medium
2025 Genetic knockout of spinophilin (PPP1R9B) in mice limited locomotor suppression caused by the D2R agonist quinpirole, and mechanistically spinophilin was required for quinpirole-induced increases in the interaction of D2R with intracellular proteins, suggesting spinophilin mediates agonist-induced D2R internalization in striatal postsynaptic dendritic spines. Spinophilin knockout mice, behavioral locomotion assay, co-immunoprecipitation/interaction proteomics following quinpirole treatment bioRxivpreprint Medium
2025 Using proximity labeling (Ultra-ID) and orthogonal nanobody pulldown (ID-oPD), 614 specific spinophilin-interacting proteins were identified in HEK293 cells, many involved in mRNA processing and translation. In the brain, spinophilin mRNA is highly neuropil-localized, spinophilin may limit its own expression but promote expression of other PSD-associated proteins, suggesting a role in mRNA translation and synaptic protein expression within dendritic spines. Ultra-ID proximity labeling, ALFA-tag nanobody pulldown (ID-oPD), mass spectrometry, validation by orthogonal approaches, in situ hybridization/RNA localization bioRxivpreprint Low

Source papers

Stage 0 corpus · 64 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
1990 The spino(trigemino)pontoamygdaloid pathway: electrophysiological evidence for an involvement in pain processes. Journal of neurophysiology 348 2329357
1997 Transneuronal labeling of a nociceptive pathway, the spino-(trigemino-)parabrachio-amygdaloid, in the rat. The Journal of neuroscience : the official journal of the Society for Neuroscience 175 9133395
1989 A possible spino (trigemino)-ponto-amygdaloid pathway for pain. Neuroscience letters 133 2474780
1995 Spino (trigemino) parabrachiohypothalamic pathway: electrophysiological evidence for an involvement in pain processes. Journal of neurophysiology 109 7760119
1984 A spino-reticulo-thalamic pathway in the rat: an anatomical study with reference to pain transmission. Neuroscience 105 6087196
1991 The spino-latero-reticular system of the rat: projections from the superficial dorsal horn and structural characterization of marginal neurons involved. Neuroscience 103 1721691
1992 Moderate instability of the trinucleotide repeat in spino bulbar muscular atrophy. Human molecular genetics 92 1303195
1968 Responses to a spino-olivo-cerebellar pathway in the cat. The Journal of physiology 89 5639763
1988 Spinal and trigeminal projections to the parabrachial nucleus in the rat: electron-microscopic evidence of a spino-ponto-amygdalian somatosensory pathway. Somatosensory research 78 3282296
1969 Termination and functional organization of the dorsolateral spino-olivocerebellar path. The Journal of physiology 68 5272211
2010 Injury of the spino-thalamo-cortical pathway is necessary for central post-stroke pain. European neurology 63 20699616
1995 Antinociception produced by an ascending spino-supraspinal pathway. The Journal of neuroscience : the official journal of the Society for Neuroscience 63 7722653
2016 Prolonged Type 1 Metabotropic Glutamate Receptor Dependent Synaptic Signaling Contributes to Spino-Cerebellar Ataxia Type 1. The Journal of neuroscience : the official journal of the Society for Neuroscience 40 27147646
1997 A neural model of cerebellar learning for arm movement control: cortico-spino-cerebellar dynamics. Learning & memory (Cold Spring Harbor, N.Y.) 40 10456112
2017 Myricetin Reduces Toxic Level of CAG Repeats RNA in Huntington's Disease (HD) and Spino Cerebellar Ataxia (SCAs). ACS chemical biology 38 29172480
1984 Origin of signals conveyed by the ventral spino-cerebellar tract and spino-reticulo-cerebellar pathway. Experimental brain research 32 6723862
1995 Step phase-related excitability changes in spino-olivocerebellar paths to the c1 and c3 zones in cat cerebellum. The Journal of physiology 31 7776251
1993 Morphine depresses the transmission of noxious messages in the spino(trigemino)-ponto-amygdaloid pathway. European journal of pharmacology 31 8440306
1986 Subclinical cervico-spino-bulbar effects of lead: a study of short-latency somatosensory evoked potentials in workers exposed to lead, zinc, and copper. American journal of industrial medicine 30 3019134
2015 The spino-bulbar-cerebellar pathway: organization and neurochemical properties of spinal cells that project to the lateral reticular nucleus in the rat. Frontiers in neuroanatomy 28 25657619
2011 The prevalence of central poststroke pain according to the integrity of the spino-thalamo-cortical pathway. European neurology 28 22142796
2019 In Human and Mouse Spino-Cerebellar Tissue, Ataxin-2 Expansion Affects Ceramide-Sphingomyelin Metabolism. International journal of molecular sciences 27 31766565
2015 Loss of the tumor suppressor spinophilin (PPP1R9B) increases the cancer stem cell population in breast tumors. Oncogene 27 26387546
1990 Spatio-temporal organization of the somaesthetic projections in the red nucleus transmitted through the spino-rubral pathway in the cat. Experimental brain research 27 2323387
2009 Distinct spatiotemporal pattern of CNS lesions revealed by USPIO-enhanced MRI in MOG-induced EAE rats implicates the involvement of spino-olivocerebellar pathways. Journal of neuroimmunology 23 19346009
1988 Spino-cerebellar degeneration with polyneuropathy associated with ceroid lipofuscinosis in one family. Journal of child neurology 22 3422677
1978 The ventral spino-olivocerebellar system in the cat. IV. Spinal transmission after administration of clonidine and L-dopa. Experimental brain research 19 212284
2019 Distinct mechanisms of signal processing by lamina I spino-parabrachial neurons. Scientific reports 17 31848358
2016 Adaptive plasticity of spino-extraocular motor coupling during locomotion in metamorphosing Xenopus laevis. The Journal of experimental biology 17 27103674
2001 Spino-bulbo-spinal pathway mediating vagal modulation of nociceptive-neuroendocrine control of inflammation in the rat. The Journal of physiology 16 11313448
2018 Central sensitization of the spino-parabrachial-amygdala pathway that outlasts a brief nociceptive stimulus. The Journal of physiology 15 30004124
2022 The Spino-Parabrachial Pathway for Itch. Frontiers in neural circuits 13 35250493
2006 Correlation of noxious evoked c-fos expression in areas of the somatosensory system during chronic pain: involvement of spino-medullary and intra-medullary connections. Neuroscience letters 12 17052848
1992 A re-examination of the spino-reticulo-diencephalic pathway in the cat. Brain research 12 1377978
1976 Ascending spinal tracts of the spino-bulbo-spinal reflex in cats. The Japanese journal of physiology 12 192931
2023 A direct spino-cortical circuit bypassing the thalamus modulates nociception. Cell research 11 37311832
1982 Convergence of muscle spindle afferents on single neurons of the cat dorsal spino-cerebellar tract and their synaptic efficacy. Brain research 11 6295561
2020 Physical disuse contributes to widespread chronic mechanical hyperalgesia, tactile allodynia, and cold allodynia through neurogenic inflammation and spino-parabrachio-amygdaloid pathway activation. Pain 10 32701841
2009 PPP1R9B (Neurabin 2): involvement and dynamics in the NK immunological synapse. European journal of immunology 10 19130477
1989 Modification of spino-bulbar autonomic cholinergic systems by activation of alpha-adrenergic receptors. Journal of the autonomic nervous system 10 2576271
2014 Spino-olivary projections in the rat are anatomically separate from postsynaptic dorsal column projections. The Journal of comparative neurology 7 24357064
1983 The inferior olive of a prosimian primate Galago senegalensis. I. Conformation and spino-olivary projections. The Journal of comparative neurology 7 6194187
2021 Mutation of SPINOPHILIN (PPP1R9B) found in human tumors promotes the tumorigenic and stemness properties of cells. Theranostics 6 33537097
1991 Gracile projection to the cat medial accessory olive: ultrastructural termination patterns and convergence with spino-olivary projection. The Journal of comparative neurology 6 1717518
2015 The spino-bulbar-cerebellar pathway: Activation of neurons projecting to the lateral reticular nucleus in the rat in response to noxious mechanical stimuli. Neuroscience letters 5 25711799
2013 An update on Spino-cerebellar ataxias. Annals of Indian Academy of Neurology 5 24101804
2006 Reticulo-collicular and spino-collicular projections involved in eye and eyelid movements during the blink reflex. Neuroscience research 5 16973230
1975 Neuronal activity in the lateral vestibular nucleus of the cat. V. Topographical distribution of inhibitory effects mediated by the spino-olivocerebellar pathway. Pflugers Archiv : European journal of physiology 5 1239007
2022 Effects of the administration of Elovl5-dependent fatty acids on a spino-cerebellar ataxia 38 mouse model. Behavioral and brain functions : BBF 4 35933444
2022 Reliable virtual clinical assessment in spino-bulbar muscular atrophy (SBMA). Journal of neurology, neurosurgery, and psychiatry 4 36137740
2015 Functional Connections of the Vestibulo-spino-adrenal Axis in the Control of Blood Pressure Via the Vestibulosympathetic Reflex in Conscious Rats. The Korean journal of physiology & pharmacology : official journal of the Korean Physiological Society and the Korean Society of Pharmacology 4 26330755
2015 Management of Sacral Tumors Requiring Spino-Pelvic Reconstruction with Different Histopathologic Diagnosis: Evaluation with Four Cases. Asian spine journal 4 26713133
1983 Autosomal recessive spino-olivo-cerebellar degeneration without ataxia. Journal of neurology, neurosurgery, and psychiatry 4 6886703
1990 Different spinal effects of opioid agonists on spinal and spino-bulbo-spinal reflexes in rats. Journal of neural transmission. General section 2 1967529
2026 Deconstruction of a spino-brain-spinal cord circuit that drives chronic pain. Nature 1 41922770
2024 Low-Frequency Stimulation of Trpv1-Lineage Peripheral Afferents Potentiates the Excitability of Spino-Periaqueductal Gray Projection Neurons. The Journal of neuroscience : the official journal of the Society for Neuroscience 1 38050062
2024 The New Face of Dynamic Mutation-The CAA [CAG]n CAA CAG Motif as a Mutable Unit in the TBP Gene Causative for Spino-Cerebellar Ataxia Type 17. International journal of molecular sciences 1 39125760
2023 A blended neurostimulation protocol to delineate cortico-muscular and spino-muscular dynamics following neuroplastic adaptation. Frontiers in neurology 1 37396760
1988 [Spatial organization of the sources of the spino-reticulo-cerebellar pathway]. Neirofiziologiia = Neurophysiology 1 2456470
2026 Erratum: Mutation of SPINOPHILIN (PPP1R9B) found in human tumors promotes the tumorigenic and stemness properties of cells: Erratum. Theranostics 0 41695473
2025 Deconstruction of a spino-brain-spinal cord circuit drives chronic mechanical pain. Research square 0 41282163
2023 Carrier frequency of Spino-muscular atrophy in individuals of a reproductive age group from North India. Journal of family medicine and primary care 0 36994015
2016 A rapidly progressive defective spermatogenesis in a Mexican family affected by spino-bulbar muscular atrophy. Systems biology in reproductive medicine 0 26901084
2001 Electrophysiological investigation of spino-olivary projections originating from sacral segments of the cat spinal cord. Acta neurobiologiae experimentalis 0 11905153

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