Affinage

RPL37A

Large ribosomal subunit protein eL43 · UniProt P61513

Length
92 aa
Mass
10.3 kDa
Annotated
2026-06-10
13 papers in source corpus 6 papers cited in narrative 6 extracted findings
Cross-family judge vs UniProt: Affinage preferred faithfulness: 4/4 claims corpus-supported (100%)

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

RPL37A (eL43) is a small basic component of the 60S ribosomal subunit, defined as a ~10 kDa, 91-residue protein whose N-terminal methionine is removed after translation (PMID:2546769). It carries a conserved Cys2-Cys2 zinc finger motif implicated in protein-RNA interaction, identified from sequence analysis of the chicken ortholog (PMID:1380836). Transcription of the gene is governed by defined promoter architecture: a proximal 5'-flanking region (nucleotides -78 to -35) is required for promoter activity and is bound by nuclear proteins, with maximal activity mapping to -120 to +168 and nine distinct protein-binding footprints distributed from -122 to +195 (PMID:8477735, PMID:8665930). Beyond transcriptional control, supply of the protein is set post-transcriptionally: in yeast, the dedicated chaperones Puf6 and Loc1 each bind RPL43 mRNA individually to lower its stability and translation, tuning eL43 output for ribosome assembly (PMID:34661244). No direct structural or functional dissection of the human zinc finger or of RPL37A's role within the assembled ribosome has been characterized in the available corpus.

Mechanistic history

Synthesis pass · year-by-year structured walk · 5 steps
  1. 1989 Medium

    Established the primary identity of the protein, fixing its length, mass, and post-translational N-terminal processing as a basis for all later structural and functional work.

    Evidence Recombinant cDNA sequencing and direct NH2-terminal protein sequencing of rat L37a

    PMID:2546769

    Open questions at the time
    • No functional role within the ribosome assigned
    • Single species, single lab characterization
    • No structural model of the protein
  2. 1992 Low

    Identified a Cys2-Cys2 zinc finger motif from sequence, raising the hypothesis that the protein contacts RNA through this motif.

    Evidence cDNA and genomic DNA sequencing with motif analysis of chicken L37a

    PMID:1380836

    Open questions at the time
    • Zinc finger-RNA interaction inferred from sequence, not experimentally validated
    • No demonstration of zinc binding
    • No identification of any RNA partner
  3. 1993 Medium

    Mapped the gene's exon-intron structure and localized a proximal promoter element bound by nuclear proteins, beginning to define how the gene's transcription is controlled.

    Evidence Nucleotide sequencing, CAT reporter promoter deletion, and DNase I footprinting of the chicken gene

    PMID:8477735

    Open questions at the time
    • Identity of the bound nuclear proteins not determined
    • Restricted to chicken; human regulatory architecture not addressed
  4. 1996 Medium

    Extended the promoter map to define the full region needed for maximal activity and resolved nine discrete protein-binding sites, refining the transcriptional control model.

    Evidence CAT reporter transfection and DNase I protection assays in a chicken cell line

    PMID:8665930

    Open questions at the time
    • Trans-acting factors at the nine footprints not identified
    • Functional contribution of individual footprints to regulation not dissected
  5. 2022 Medium

    Revealed a post-transcriptional regulatory layer, showing that chaperones Puf6 and Loc1 each bind the mRNA to limit protein output, linking eL43 abundance control to ribosome assembly.

    Evidence RNA immunoprecipitation, mRNA stability and translation reporter assays, and loc1Δ/puf6Δ deletion analysis in yeast

    PMID:34661244

    Open questions at the time
    • Demonstrated in yeast ortholog; conservation to human RPL37A not tested
    • Mechanism by which individual binding (vs dimer) suppresses translation unresolved
    • Connection to assembly stoichiometry not directly measured

Open questions

Synthesis pass · forward-looking unresolved questions
  • The protein's role within the assembled 60S subunit and the function of its zinc finger in human ribosomes remain undefined.
  • No structural placement of eL43 in the human ribosome in the corpus
  • No experimental test of zinc finger-RNA contact
  • No phenotype or disease association characterized

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0003723 RNA binding 1 GO:0005198 structural molecule activity 1
Localization
GO:0005840 ribosome 1
Pathway
R-HSA-8953854 Metabolism of RNA 1
Partners
Complex memberships
60S ribosomal subunit

Evidence

Reading pass · 6 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
1989 Rat ribosomal protein L37a contains 91 amino acids (NH2-terminal methionine is removed after translation) and has a molecular mass of 10143 Da, as confirmed by both cDNA sequencing and direct NH2-terminal amino acid sequencing of the protein. Recombinant cDNA sequencing and direct NH2-terminal amino acid sequencing European journal of biochemistry Medium 2546769
1992 Chicken ribosomal protein L37a contains a Cys2-Cys2 zinc finger motif, implicated in protein-RNA interaction, as deduced from cDNA and genomic DNA sequence. cDNA and genomic DNA sequencing with sequence motif analysis Biochimica et biophysica acta Low 1380836
1993 Rat ribosomal protein L37 (a paralog, not L37a) has 96 amino acids, NH2-terminal methionine removed post-translationally, and contains a single C2-C2 zinc finger-like motif; the L37 gene has ~13–14 copies in nuclear DNA. Recombinant cDNA sequencing and Southern blot hybridization Biochemical and biophysical research communications Low 8484768
1993 The chicken RPL37A gene spans 2626 bp distributed across four exons and three introns; the region from nucleotides -78 to -35 in the 5'-flanking region is important for promoter activity and serves as a binding site for nuclear proteins. Nucleotide sequencing, promoter deletion analysis (CAT reporter assay), and DNase I footprinting European journal of biochemistry Medium 8477735
1996 Transcriptional control elements of the chicken RPL37A gene were mapped: the region -120 to +168 is required for maximal promoter activity, and nine protein-binding regions distributed from -122 to +195 were identified by DNase I footprinting. CAT reporter transfection assay and DNase I protection (footprinting) assay in chicken cell line European journal of biochemistry Medium 8665930
2022 In yeast, the dedicated chaperones Puf6 and Loc1 bind RPL43 (eL43/RPL37A ortholog) mRNA individually (not as a dimer complex as with other mRNAs), and this binding negatively regulates eL43 production by decreasing RPL43A/B mRNA stability and translation. RNA immunoprecipitation, mRNA stability assays, translation reporter assays, and deletion mutant analysis (loc1Δ, puf6Δ) Journal of biochemistry Medium 34661244

Source papers

Stage 0 corpus · 13 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
1993 The primary structure of L37--a rat ribosomal protein with a zinc finger-like motif. Biochemical and biophysical research communications 12 8484768
1991 Screening a yeast promoter library leads to the isolation of the RP29/L32 and SNR17B/RPL37A divergent promoters and the discovery of a gene encoding ribosomal protein L37. Gene 10 1840541
1989 The primary structure of rat ribosomal protein L37a. European journal of biochemistry 10 2546769
2020 Analysis of RPL37A, MTSS1, and HTRA1 expression as potential markers for pathologic complete response and survival. Breast cancer (Tokyo, Japan) 9 32951185
1993 The structure of the gene encoding chicken ribosomal protein L37a. European journal of biochemistry 9 8477735
1996 A characterization of transcriptional regulatory elements in chicken ribosomal protein L37a gene. European journal of biochemistry 8 8665930
1996 The intron-containing ribosomal protein-encoding genes L5, L7a and L37a are unlinked in chicken. Gene 8 8666239
1992 The primary structure of chicken ribosomal protein L37a. Biochimica et biophysica acta 7 1380836
1998 The characterization of two Dictyostelium discoideum genes encoding ribosomal proteins with sequence similarity to rat L27a and L37a. Bioscience, biotechnology, and biochemistry 4 9836437
2002 Characterization of cDNA encoding a L37a ribosomal protein from Taenia crassiceps and its potential use in phylogenetic reconstructions. Experimental parasitology 2 12594966
1999 Ribosomal Proteins S27E, P2, and L37A from Marine Invertebrates. Marine biotechnology (New York, N.Y.) 2 10373627
1999 An enhancer trap line identifies the Drosophila homolog of the L37a ribosomal protein. Gene 1 10571043
2022 The dedicated chaperones of eL43, Puf6 and Loc1 can also bind RPL43 mRNA and regulate the production of this ribosomal protein. Journal of biochemistry 0 34661244

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