| 1994 |
PTPN13/PTPL1 is a large cytoplasmic protein tyrosine phosphatase (270 kDa) with a PTP domain at the C-terminus, a band 4.1/FERM domain, five PDZ (GLGF repeat) domains, and a leucine zipper motif; it dephosphorylates 32P-labeled myelin basic protein in vitro, establishing its phosphatase activity. |
PCR-based cloning, peptide antisera immunoprecipitation, in vitro phosphatase assay with 32P-labeled substrate |
The Journal of biological chemistry |
High |
7929060
|
| 1997 |
PDZ domains 2 and 4 of PTPN13/PTPL1 interact with high affinity with the C-terminal tail of Fas/CD95; the three C-terminal residues (SLV) of Fas are necessary and sufficient for binding, with specific contributions from residues at positions -2, -3, -4, and -5. |
Peptide binding assay, affinity measurements |
The Journal of biological chemistry |
High |
9261095
|
| 1997 |
The fourth PDZ domain of PTPN13/PTPL1 interacts with the C-terminal four residues of PARG1, a novel 150 kDa RhoGAP protein; PARG1 shows GAP activity toward Rho, Rac, and Cdc42 in vitro with preference for Rho, suggesting a PTPN13-PARG1 complex as a dual negative regulator of Rho signaling. |
Yeast two-hybrid, in vitro GAP assay |
The Journal of biological chemistry |
Medium |
9305890
|
| 1998 |
PDZ domains 2 and 4 of PTPN13/PTP-BL bind the LIM domain of RIL; the RIL LIM domain can be phosphorylated on tyrosine in vitro and in vivo and is dephosphorylated in vitro by the PTPase domain of PTP-BL, placing RIL as a substrate. |
Yeast two-hybrid, in vitro kinase and phosphatase assays, immunohistochemistry for colocalization |
Molecular biology of the cell |
High |
9487134
|
| 1999 |
The FERM domain of PTP-BL/PTPN13 is necessary and sufficient for targeting the protein to the apical side of epithelial MDCK cells; the protein shows a submembranous localization ~10-15 nm from the plasma membrane as shown by immuno-electron microscopy, and FRAP experiments show dynamic redistribution via a cytosolic pool. The PTP domains mediate homotypic interactions. |
Transient expression of modular domains, immuno-electron microscopy, immunofluorescence, FRAP, yeast two-hybrid |
Journal of cell science |
High |
10504335
|
| 1999 |
The PDZ1 domain of PTPN13/PTP-BAS interacts with IκBα through the N-terminal three ankyrin repeats of IκBα; this interaction was confirmed by co-immunoprecipitation in HeLa cells. Dominant-negative PTP-BAS caused tyrosine phosphorylation of IκBα, suggesting PTPN13 dephosphorylates IκBα to regulate NF-κB activation. |
Yeast two-hybrid, co-immunoprecipitation, dominant-negative mutant expression |
The Biochemical journal |
Medium |
9882613
|
| 2000 |
PTPN13/PTP-BL PDZ2 domain (specifically the non-spliced variant PDZ2a) binds the extreme C-terminus of the tumor suppressor APC with a dissociation constant of 8.1×10⁻⁹ M; a naturally occurring 5-amino acid splice insertion (PDZ2b) abolishes this binding. Interaction confirmed by co-precipitation in COS cells and colocalization in epithelial cells. |
Yeast two-hybrid, surface plasmon resonance, co-precipitation in transfected COS cells, immunofluorescence colocalization |
Oncogene |
High |
10951583
|
| 2000 |
PTPN13/PTP-BL PDZ2 domain interacts with the third LIM domain (including the C-terminus) of TRIP6; both proteins colocalize in transfected epithelial cells at F-actin structures, placing PTPN13 in a multiprotein complex with RIL and TRIP6 at actin-based structures. |
Yeast two-hybrid, co-precipitation from transfected cells, immunofluorescence colocalization |
European journal of cell biology |
Medium |
10826496
|
| 2001 |
The PDZ3 domain of PTPN13/PTP-BL interacts with the extreme C-terminus of PRK2 (protein kinase C-related kinase 2), a Rho effector serine/threonine kinase; a conserved C-terminal cysteine of PRK2 is indispensable for this interaction. Both proteins colocalize in lamellipodia-like structures in HeLa cells. |
Yeast two-hybrid, co-immunoprecipitation from transfected HeLa cells, site-directed mutagenesis, immunofluorescence colocalization |
FEBS letters |
Medium |
11356191
|
| 2002 |
PTPN13/PTP-BL is recruited to ephrinB expression domains with delayed kinetics after EphB receptor engagement and mediates dephosphorylation of ephrinB, acting downstream of Src family kinases which phosphorylate ephrinB. This defines a switch from phosphotyrosine/SFK-dependent signaling to PDZ-dependent signaling. |
Co-immunoprecipitation, cell biology/signaling assays, phosphorylation analysis |
Molecular cell |
High |
11983165
|
| 2002 |
NMR solution structure of PDZ2 of PTP-BL/PTPN13 reveals a compact canonical PDZ fold with six β-strands and two α-helices, with a unique flexible L1 loop. PDZ2 binds C-termini of human Fas/CD95 and RIL (including non-canonical E-x-V motif), but murine PDZ2 does not bind murine Fas/CD95, suggesting species-specific differences in substrate recognition. |
NMR structure determination, 15N relaxation analysis, peptide binding studies |
Journal of molecular biology |
High |
11884147
|
| 2002 |
PTPN13/PTPL1/FAP-1 promotes apoptosis in MCF7 breast cancer cells by inhibiting the IRS-1/PI3K/Akt pathway; antisense abrogation of PTPL1 expression abolished tamoxifen-induced apoptosis, and PTPL1 expression reduced IRS-1 tyrosine phosphorylation by 65%, PI3K activity by 80%, and Akt activation by 55%. |
Antisense stable transfection, PI3K activity assay, Akt phosphorylation assay, TUNEL/nucleosome ELISA apoptosis assay |
The Journal of biological chemistry |
High |
12354757
|
| 2003 |
The FERM domain of PTPN13/PTPL1 is necessary and sufficient for membrane targeting to the apical plasma membrane enriched in dorsal microvilli; two PtdIns(4,5)P2-binding motifs within the FERM domain are required—mutation of both abolishes membrane localization. Direct interaction of the FERM domain with PtdIns(4,5)P2 was demonstrated by protein-lipid overlay assay. |
Live imaging of domain constructs in HeLa cells, site-directed mutagenesis of PIP2-binding motifs, protein-lipid overlay, cell fractionation, neomycin treatment |
Journal of cell science |
High |
12766187
|
| 2003 |
Endogenous PTPN13/PTPL1 constitutively associates with TAPP1 (a PtdIns(3,4)P2-binding adaptor) primarily through its first PDZ domain; this complex enables PTPN13 association with PtdIns(3,4)P2 in vitro. TAPP1 binding maintains PTPN13 in the cytoplasm; upon H2O2 stimulation (which produces PtdIns(3,4)P2), the PTPN13-TAPP1 complex translocates to the plasma membrane. |
Co-immunoprecipitation of endogenous proteins, GST pull-down, RNA interference, lipid binding assay, subcellular fractionation |
The Biochemical journal |
High |
14516276
|
| 2003 |
PTPN13/PTP-BL localizes to centrosomes during inter- and metaphase, the spindle midzone during anaphase, and concentrates at the midbody during cytokinesis. Targeting to midbody/centrosome requires a specific N-terminal splicing variant (182 aa insertion). The FERM domain associates with the contractile ring and co-sediments with F-actin; the N-terminus co-sediments with microtubules. Overexpression of wild-type or phosphatase-dead PTPN13 causes cytokinesis defects and multinucleate cells. |
Immunofluorescence localization of endogenous protein, domain deletion constructs, actin/microtubule co-sedimentation, overexpression functional assay |
Molecular biology of the cell |
High |
12529439
|
| 2004 |
Crystal structure of the PTPN13/PTPL1 catalytic domain at 1.8 Å resolution reveals the standard PTP fold with an additional N-terminal helix and an ordered phosphate in the active site. A second positively charged pocket near the active site resembles the second phosphotyrosine-binding site of PTP1B; consistent with this, PTPL1 dephosphorylates a bis-phosphorylated insulin receptor peptide more efficiently than monophosphorylated peptides. Four of five colorectal cancer mutations map to solvent-exposed regions remote from the active site; the fifth (Met2307Thr) is near the active-site cysteine and significantly decreases activity. |
X-ray crystallography (1.8 Å), in vitro phosphatase assay with bis- vs mono-phosphorylated peptides, mutant activity assays |
The Journal of biological chemistry |
High |
15611135
|
| 2004 |
NMR structure of the alternatively spliced PDZ2b (with 5-residue insertion) of PTP-BL/PTPN13 reveals that the insert causes reorientation of a loop that closes the binding site (Lys32 side chain occludes the pocket) and repositions α-helix 2, rendering the binding pocket unable to accommodate APC C-terminus; PDZ2b binds PIP2 and PIP3 with KD ~230 μM via a groove overlapping the APC binding site. |
NMR structure determination, NMR titration binding studies, high-affinity chromatography for lipid binding |
Journal of molecular biology |
High |
14596806
|
| 2007 |
PTPN13/PTPL1 directly dephosphorylates IRS-1 (insulin receptor substrate-1) in vitro and in cells; this is confirmed by dominant-negative mutant and RNAi approaches. PTPN13 expression blocks the IRS-1/PI3K/Akt pathway, inhibits IGF-I-induced cell survival, and induces apoptosis. |
In vitro phosphatase assay, co-immunoprecipitation, dominant-negative mutant, RNA interference, PI3K/Akt pathway assays, cell survival assays |
Cancer research |
High |
17638892
|
| 2007 |
PTPN13 negatively regulates Her2/ErbB2 signaling by dephosphorylating the Her2 signaling domain; siRNA knockdown of PTPN13 augmented Her2 phosphorylation and promoted cancer cell invasiveness. Growth factor-induced phosphorylation of PTPN13 is required for its ability to dephosphorylate Her2, suggesting a negative feedback mechanism. PTPN13 mutations found in human tumors reduced phosphatase activity. |
siRNA phosphatase library screen, phosphorylation assays, cell invasion assays, mutant phosphatase activity assays |
Oncogene |
High |
17982484
|
| 2007 |
PTPN13/PTP-BL dephosphorylates STAT proteins (STAT4, STAT6 confirmed) in vitro and in vivo, attenuating STAT-mediated gene activation. In CD4+ T cells, PTP-BL deficiency leads to increased and prolonged activation of STAT4 and STAT6, and consequently enhanced Th1 and Th2 cell differentiation. |
In vitro phosphatase assay, PTP-BL-deficient mouse model, T cell differentiation assays, STAT phosphorylation measurements |
Immunity |
High |
17306571
|
| 2007 |
PTPN13/PTPL1 dephosphorylates phosphotyrosine-55 of TRIP6 in vitro, inhibiting LPA-induced tyrosine phosphorylation of TRIP6 in cells. This negative regulation requires direct protein-protein interaction and phosphatase activity of PTPL1, preventing TRIP6 turnover at adhesion sites and inhibiting LPA-induced Crk recruitment and cell migration. |
In vitro phosphatase assay, co-immunoprecipitation, phosphatase-dead mutant, cell migration/morphology assays |
The Journal of biological chemistry |
High |
17591779
|
| 2007 |
PTPN13/PTPL1 interacts with the TRP channel TRPM2 (confirmed by co-IP and GST pull-down); PTPL1 co-expression reduces TRPM2 tyrosine phosphorylation and inhibits H2O2/TNFα-induced Ca2+ influx and cell death. PTPL1 knockdown increases TRPM2 tyrosine phosphorylation, Ca2+ influx, and cell death susceptibility. Endogenous TRPM2-PTPL1 association confirmed in U937 cells. |
PDZ array blot, co-immunoprecipitation, GST pull-down, siRNA knockdown, Ca2+ imaging, cell viability assay |
American journal of physiology. Cell physiology |
High |
17251321
|
| 2007 |
An allosteric intramolecular PDZ1-PDZ2 interaction within PTPN13/PTP-BL modulates PDZ2 binding specificity; structural studies revealed PDZ1 directly contacts a surface on PDZ2 opposite the peptide binding groove, causing long-range allosteric changes in the PDZ2 binding pocket. |
Phage display library screening, NMR structural studies, binding specificity assays |
Biochemistry |
High |
17979300
|
| 2008 |
ICSBP/IRF8 represses PTPN13 gene transcription by binding to a cis element in the proximal PTPN13 promoter in differentiating myeloid cells; this repression is regulated by phosphorylation of conserved tyrosine residues in the ICSBP IRF domain and increases during myeloid differentiation. ICSBP influences Fas-induced apoptosis in a FAP-1/PTPN13-dependent manner. |
CpG island microarray with chromatin immunoprecipitation, luciferase reporter assays, ChIP, phosphorylation mutants, Fas-apoptosis assays |
The Journal of biological chemistry |
High |
18195016
|
| 2009 |
PTPN13 phosphatase activity inhibits Ras/RAF/MEK/Erk signaling downstream of ErbB2, EGFR, and H-RasV12; co-transfection of wild-type but not enzymatically inactive PTPN13 inhibited this pathway. HPV-negative HNSCCs with PTPN13 phosphatase mutations showed impaired Ras/RAF/MEK/Erk inhibition. MEK inhibitor U0126 blocked anchorage-independent growth in PTPN13-deficient cells, placing PTPN13 upstream of ERK signaling. |
Co-transfection assays, phosphatase activity mutants, ERK phosphorylation assays, MEK inhibitor epistasis, anchorage-independent growth assay |
Oncogene |
High |
19734941
|
| 2010 |
PTPN13/PTPL1 directly dephosphorylates Src at tyrosine 419 (the activating phosphorylation site) as shown by substrate-trapping experiments; PTPL1 knockdown increases Src-Y419 phosphorylation and activates downstream Fak and p130cas. PTPL1 inhibition dramatically increased tumor growth and invasion, identifying PTPL1 as the first phosphatase shown to directly inhibit Src in intact cells. |
Substrate-trapping with catalytic mutant, phosphorylation assays, RNA interference, in vivo tumor growth assay, invasion assay |
Cancer research |
High |
20501847
|
| 2012 |
PTPN13/PTPL1 is a direct transcriptional target of ICSBP; repression requires cooperation of ICSBP with Tel and HDAC3 forming a multiprotein complex at the PTPN13 cis element. The leukemia fusion protein Tel-PdgfRβ disrupts this repressive complex by competing with the Tel component, resulting in increased PTPN13 expression and Fas-resistance. |
ChIP, promoter reporter assays, knockdown of Tel/HDAC3, co-immunoprecipitation of repressor complex |
The Journal of biological chemistry |
High |
22262849
|
| 2012 |
SDCCAG3 forms a complex with PTPN13 (co-immunoprecipitation) and both colocalize at the midbody during cytokinesis; SDCCAG3 is an endosomal protein (early/recycling endosome) that interacts with the ArfGAP GIT1. Overexpression or downregulation of SDCCAG3 causes multinucleate cells, linking PTPN13's cytokinesis function to endosomal trafficking via SDCCAG3-GIT1. |
Co-immunoprecipitation, immunofluorescence colocalization, overexpression/knockdown functional assays |
Oncogene |
Medium |
23108400
|
| 2013 |
PTPN13/PTPL1 dephosphorylates p85β (PI3K regulatory subunit) at Tyr-655, which stimulates p85β binding to and degradation through the SCF-FBXL2 ubiquitin ligase complex; this controls PI3K signaling by reducing the pool of free p85β that competes with p85-p110 heterodimers for IRS1. |
Protein purification (FBXL2 complex), co-immunoprecipitation, ubiquitylation assays, phosphorylation site mutants, PI3K signaling assays |
Nature cell biology |
High |
23604317
|
| 2014 |
PTEN binds to PDZ2 of PTPN13 in a manner dependent on the PTEN PDZ-binding motif and the specific PDZ domain arrangement including the PDZ1-PDZ2 interdomain region; this was shown by yeast two-hybrid and GST pull-down with mutational analysis of the PTEN PDZ-BM. |
Yeast two-hybrid, GST pull-down, site-directed mutagenesis of PTEN PDZ-BM |
Methods (San Diego, Calif.) |
Medium |
25448478
|
| 2014 |
PTPN13 co-immunoprecipitates and colocalizes with β-catenin; PTPN13 regulates β-catenin phosphorylation, stability, and transcriptional activity during megakaryocytic differentiation. PTPN13 is stabilized upon Wnt signaling, and its silencing triggers megakaryocytic differentiation through effects on ERK and STAT signaling and β-catenin. |
Co-immunoprecipitation, colocalization, siRNA silencing, differentiation assays, phosphorylation/stability assays |
Biochimica et biophysica acta |
Medium |
25193362
|
| 2017 |
PTPN13/FAP-1 is a PDZ-domain-mediated binding partner of calpain-2; PTPN13 is cleaved by calpain-2, which inactivates its phosphatase activity and generates stable breakdown products (P13BPs). PTPN13 dephosphorylates and inhibits c-Abl; after TBI, calpain-2-mediated PTPN13 cleavage activates c-Abl and triggers tau tyrosine phosphorylation and oligomer accumulation. Post-TBI calpain-2 inhibitor treatment prevented this cascade. |
PDZ binding partner identification, co-immunoprecipitation, in vitro cleavage and phosphatase activity assays, calpain-2 selective inhibitor in vivo |
Scientific reports |
High |
28924170
|
| 2018 |
PTPN13/PTPL1 interacts with PTEN, and this interaction is necessary for apical membrane enrichment of PTEN in polarized epithelial cells; PTPL1 depletion (CRISPR/Cas9) causes enlarged brush border similar to PTEN loss. PTPL1 functions as a scaffolding anchor for PTEN in this process—its phosphatase activity is NOT required. |
CRISPR/Cas9 knockout, live imaging of brush border formation, co-immunoprecipitation, domain mapping |
Molecular and cellular biology |
High |
29581186
|
| 2018 |
NMR solution structures of the PDZ3 domain of murine PTPN13 in apo form and in complex with the C-terminal peptide of PRK2 reveal classical compact globular fold; PRK2 binds via an elongated peptide in the canonical groove between β-strand and α-helix, with P0 cysteine and P-2 aspartate facing the groove (class III ligand recognition). |
Multidimensional NMR spectroscopy, structure determination |
Journal of molecular biology |
High |
30189200
|
| 2019 |
The tandem PDZ2/3 domain of PTPN13 shows allosterically modulated binding to APC; PDZ3 presence alters PDZ2 binding affinity for APC, and PRK2 is identified as a weak binding partner of PDZ2. HADDOCK molecular modeling and NMR spectroscopy support an allosteric effect from PDZ3 on PDZ2's ligand binding site. |
NMR spectroscopy, HADDOCK molecular modeling, binding affinity measurements of isolated vs tandem domains |
BMC molecular and cell biology |
Medium |
31286859
|
| 2020 |
PTPN13 phosphatase activity is required to inhibit breast cancer cell motility and invasion; PTPN13 overexpression in MDA-MB-231 cells inhibited invasion and induced mesenchymal-to-epithelial transition in vivo. Phosphoproteomic and GO analyses revealed a role for PTPN13 in regulation of intercellular junction proteins; PTPN13 stabilizes intercellular adhesion and promotes desmosome formation. |
Transgenic mouse crossing (HER2×PTPN13-ΔP), isogenic cell clones with WT vs catalytically inactive PTPN13, phosphoproteomics, wound healing, Boyden chamber, videomicroscopy, immunofluorescence |
Theranostics |
High |
31938048
|
| 2020 |
PTPN13 competitively binds IGF2BP1 to decrease functional IGF2BP1 levels, thereby promoting c-Myc mRNA degradation and suppressing metabolic reprogramming; this function is independent of PTPN13 phosphatase activity. HBx inhibits PTPN13 expression by upregulating DNMT3A, which binds the PTPN13 promoter (-343 to -313 bp) and increases DNA methylation to suppress transcription. |
Co-immunoprecipitation, competitive binding assays, c-Myc mRNA stability assays, ChIP on PTPN13 promoter, DNMT3A knockdown |
Oncogene |
Medium |
33051595
|
| 2021 |
PTPN13/PTPL1 suppresses TGF-β1-induced EMT in lung cancer cells by counteracting activation of canonical Smad2/3 and non-canonical p38 MAPK signaling pathways; immunoprecipitation demonstrated direct binding of PTPL1 to p38 MAPK, suggesting p38 MAPK as a direct substrate. |
siRNA knockdown, immunoprecipitation for PTPL1-p38 MAPK interaction, EMT marker analysis, Smad2/3 and p38 phosphorylation assays, xenograft model |
Acta pharmacologica Sinica |
Medium |
33536603
|
| 2022 |
PTPL1/PTPN13 suppresses lung cancer cell proliferation by counteracting the Src/ERK pathway; PTPL1 knockdown induced activation of Src/ERK signaling and promoted YAP1 nuclear translocation and activation. YAP1 co-knockdown reversed the proliferation increase caused by PTPL1 knockdown, placing PTPL1 upstream of Src/ERK/YAP1. |
shRNA knockdown, signaling pathway assays, xenograft model, double knockdown epistasis |
Thoracic cancer |
Medium |
36193770
|
| 2025 |
PTPN13 directly dephosphorylates STAT1, suppressing interferon-stimulated MHC class I antigen presentation and CD8+ T cell infiltration; peptides containing the last 11 C-terminal residues of APC (APC11) bind directly to PTPN13, block PTPN13-STAT1 interaction, restore STAT1 phosphorylation and IRF1 expression, and enhance anti-tumor immunity in CRC. APC loss thus drives immune evasion via PTPN13-dependent STAT1 dephosphorylation independently of β-catenin. |
APC knockout models, Co-immunoprecipitation for PTPN13-STAT1 interaction, STAT1 phosphorylation assays, APC11 peptide competition assay, in vivo tumor/immune infiltration assays, anti-PD1 combination experiments |
Cell research |
High |
41486293
|
| 2025 |
PDLIM4 acts as an adaptor that recruits PTP-BL/PTPN13 through its LIM domain to facilitate dephosphorylation of STAT3, STAT4, and STAT6; a disease-associated PDLIM4 nsSNP in the LIM domain reduces PTP-BL binding and impairs STAT3 dephosphorylation, linking this complex to regulation of Th1, Th2, and Th17 differentiation. |
Co-immunoprecipitation, STAT phosphorylation assays, PDLIM4-deficient T cells, LIM domain nsSNP mutant binding assay |
International immunology |
High |
42028851
|
| 2025 |
PTPN13 pathogenic mutations (identified in ALL/anemia/IBMF families) impair the PTPN13-β-catenin interaction; PTPN13 silencing reduces Bruton's tyrosine kinase (BTK) activation and β-catenin levels after B-cell receptor (BCR) stimulation, indicating PTPN13 modulates BCR signaling and lymphoid cell homeostasis through β-catenin. |
Co-immunoprecipitation of endogenous proteins, PTPN13 silencing with BCR activation assays, surface marker analysis (CD25, CD38) |
Scientific reports |
Medium |
41422331
|