| 1998 |
Human PSMD9 (p27) was identified as a subunit of the modulator trimer complex that stimulates association of the PA700 regulator with the 20S proteasome to form the active 26S proteasome. Immunoblot analysis showed p27 is associated with both the modulator complex and the 26S proteasome complex. |
cDNA cloning, immunoblot analysis with anti-p27 antibody, biochemical fractionation |
Genomics |
Medium |
9653651
|
| 2001 |
Yeast Rpn4 (ortholog of PSMD9) is an extremely short-lived transcriptional activator (t1/2 ~2 min) that directly interacts with RPN2 (a 26S proteasome subunit) and is degraded by the assembled active proteasome, establishing a negative feedback circuit controlling proteasome homeostasis. |
Genetic deletion, protein stability assays, direct interaction assay (RPN4-RPN2 co-interaction), cell-cycle analysis |
Proceedings of the National Academy of Sciences of the United States of America |
High |
11248031
|
| 2001 |
The degradation signal (degron) of yeast Rpn4 was mapped to its N-terminal region, outside the transcription-activation domains. |
Domain mapping by deletion analysis |
Proceedings of the National Academy of Sciences of the United States of America |
Medium |
11248031
|
| 2001 |
Yeast Rpn4 binds the PACE element (5'-GGTGGCAAA-3') found in promoters of proteasomal genes and acts as a transcriptional activator; the protein was purified by affinity chromatography and confirmed by microsequencing. |
Gel retardation assay, affinity chromatography purification, microsequencing, reporter gene assay |
Molekuliarnaia biologiia |
High |
11443924
|
| 2004 |
Proteasomal degradation of yeast Rpn4 is mediated by two independent degradation signals: one leading to ubiquitylation on internal lysine(s), and one that is ubiquitin-independent. Both degrons must be inactivated to stabilize Rpn4. |
In vivo and in vitro degradation assays, mutagenesis of lysine residues |
The Journal of biological chemistry |
High |
15090546
|
| 2004 |
Ubr2 (E3 ubiquitin ligase) and Rad6 (E2 ubiquitin-conjugating enzyme) mediate ubiquitin-dependent degradation of yeast Rpn4. Rpn4 was demonstrated to be a physiological substrate of Ubr2 through in vivo and in vitro assays. Rad6 directly interacts with Ubr2 and is required for this pathway. |
In vivo and in vitro ubiquitylation assays, genetic deletion analysis, synthetic growth defect assay |
The Journal of biological chemistry |
High |
15504724
|
| 2004 |
Rpn4-induced proteasome expression is required for normal proteasome levels in yeast; when proteasome activity is impaired, proteasome expression increases in an Rpn4-dependent manner. A stable form of Rpn4 elevates proteasome expression, confirming the feedback model. |
Genetic epistasis, stable Rpn4 mutant expression, proteasome activity assays |
Biochemical and biophysical research communications |
High |
15358214
|
| 2006 |
Lysine 187 of yeast Rpn4 is the preferred ubiquitination site chosen from multiple susceptible lysines; lysine 187 together with a proximal acidic domain constitutes a portable degradation signal. |
In vivo and in vitro ubiquitylation assays, site-directed mutagenesis of lysine residues |
The Journal of biological chemistry |
High |
16492666
|
| 2007 |
Phosphorylation of Ser-220 (and to a lesser extent Ser-214) in the N-terminal acidic domain (NAD, aa 211-229) of yeast Rpn4 enhances binding to Ubr2 and is required for efficient ubiquitylation and degradation. The phosphorylation-dependent ubiquitylation signal (NAD) is not the major Ubr2-binding site but is essential for degradation. |
Phosphorylation site mutagenesis, in vivo and in vitro ubiquitylation assays, binding assays |
Biochimica et biophysica acta |
High |
17532487
|
| 2007 |
Mub1 (a MYND-domain protein) is an essential cofactor for Rpn4 ubiquitylation: it directly interacts with both Ubr2 and Rpn4, and in vitro reconstitution of Rpn4 ubiquitylation requires Mub1 in addition to Ubr2 and Rad6. Mub1 is itself a short-lived substrate of the Ubr2/Rad6 ligase. |
Genome-wide deletion screen, in vitro reconstitution ubiquitylation assay, co-immunoprecipitation/direct interaction assays |
Molecular and cellular biology |
High |
18070918
|
| 2008 |
Loss of Rpn4-induced proteasome expression (via disruption of Rpn4-binding site in PRE1 promoter) lowers active proteasome levels, causes G2/M cell-cycle delay, and sensitizes cells to various stresses. |
Promoter mutagenesis (PACE site disruption), proteasome activity assay, cell-cycle analysis, stress sensitivity assays |
Genetics |
High |
18832351
|
| 2009 |
Proteasomal degradation of Rpn4 is critical for cell survival under stress: a stabilized Rpn4 mutant retaining transcriptional activity severely reduces viability under genotoxic and proteotoxic stress, an effect abolished by a mutation abrogating transcriptional activity, indicating that overexpression of Rpn4 target genes is detrimental under stress. |
Stabilized Rpn4 mutant (degron-defective), transcription-activity point mutation, viability assays, genetic epistasis with proteasome mutations |
Genetics |
High |
19933873
|
| 2010 |
Inhibition of Rpn4 proteasomal degradation impairs nonhomologous end-joining (NHEJ) repair of DNA double-strand breaks; NHEJ gene expression is downregulated, Yku70 recruitment to DSBs is reduced, and Rpn4 and the proteasome are recruited to DSB sites. |
Yeast genetics, chromatin immunoprecipitation (Yku70 and Rpn4/proteasome recruitment to DSB), NHEJ assay, synthetic growth defect with checkpoint mutants |
PloS one |
Medium |
20376190
|
| 2011 |
Dam methylase-based mapping showed that yeast Rpn4 is recruited to proteasomal gene promoters only through direct DNA interactions (not via protein intermediaries). |
Dam methylase footprinting in vivo model system |
Molekuliarnaia biologiia |
Medium |
21954596
|
| 2014 |
Human PSMD9 interacts with hnRNPA1 via a PDZ domain–C-terminal motif interaction; this interaction is required for IκBα proteasomal degradation and NF-κB activation (both basal and TNF-α-induced). hnRNPA1 interacts directly with IκBα and with the proteasome upon TNF-α treatment, while PSMD9 associates constitutively with the proteasome. Point mutations in the PSMD9 PDZ domain or deletion of the hnRNPA1 C-terminus disrupt the interaction and reduce NF-κB activity. |
Co-immunoprecipitation, PDZ domain mutagenesis, C-terminal deletion of hnRNPA1, NF-κB reporter assay, siRNA knockdown in HEK293 cells |
The FEBS journal |
High |
24720748
|
| 2014 |
The central domain of yeast Rpn4 functions as a portable, interspecies proteasomal degradation signal (degron) capable of destabilizing GFP and Alpha-fetoprotein reporter proteins in human HEK293T cells as well as in yeast. |
Reporter protein fusion assay in yeast and mammalian cells, proteasome inhibitor treatment |
FEBS letters |
Medium |
25157437
|
| 2014 |
PSMD9 interacts with hnRNPA1, S14 (ribosomal protein), CSH1 (growth hormone), E12 (transcription factor), and IL6 receptor via its PDZ domain recognizing C-terminal short linear motifs of client proteins; interactions confirmed with full-length recombinant proteins and in mammalian cells. |
C-terminal peptide screening, recombinant protein binding assays, mammalian cell co-immunoprecipitation, structural modeling |
FEBS open bio |
Medium |
25009770
|
| 2015 |
A minimal hexamer 'PACE-core' sequence within PACE elements is sufficient to respond to Rpn4 transcriptional activation and is found in promoters of proteasome assembly chaperone genes, extending Rpn4's transcriptional regulon beyond subunit-encoding genes. |
Promoter deletion/mutation analysis, reporter gene assays |
FEBS letters |
Medium |
25747386
|
| 2019 |
Rpn4 abundance increases during ER stress first post-transcriptionally, then transcriptionally. Induction of RPN4 transcription during ER stress is triggered by cytosolic mislocalization of secretory proteins and is mediated by multiple signaling pathways; Rpn4 cooperates with the UPR to accelerate clearance of misfolded cytosolic proteins. |
Titratable ER stress system, genetic screen, RPN4 expression analysis, epistasis with UPR mutants, protein clearance assays in yeast |
eLife |
High |
30865586
|
| 2019 |
The PSMD9 PDZ domain binds C-terminal peptides with a preference for hydrophobic residues at the P0 position and cysteine at P-2; a low-affinity tetrapeptide was converted to a high-affinity binder (~5 μM) that inhibits PSMD9-hnRNPA1 interaction and NF-κB signaling. |
Peptide binding affinity assays, molecular dynamics simulations, NF-κB activity assay with peptide inhibitor |
Biochemistry |
Medium |
31287951
|
| 2021 |
PSMD9 is required to maintain nucleolar morphology and integrity; PSMD9-null MCF7 cells show disrupted nucleolar structure (by NPM1 immunofluorescence and electron microscopy), accumulation of WT p53, slow growth, and failure of ribosomal proteins RPS25 and RPL15 to localize to the nucleolus. Multiple ribosomal proteins co-purify/pull-down with PSMD9. |
PSMD9 knockout in MCF7 cells, NPM1 immunofluorescence, electron microscopy, ribosomal protein co-purification/pulldown, Actinomycin D treatment |
Biochemical and biophysical research communications |
Medium |
34077860
|
| 2023 |
PSMD9 interacts with proteins carrying an EXKK short linear motif (SLiM) via its coiled-coil N-terminal domain; validated interactions include hnRNPA2B1 (ERKK motif) and PRDX6 (EAKK motif) using purified proteins. PSMD9 KO in HEK293 cells induces ER stress and UPR, reduces aggresome and lipid droplet formation; these defects are rescued by PSMD9 re-expression. PSMD9 also interacts with BIP/GRP78 (EDKK) and FASN (ELKK). |
Affinity purification mass spectrometry (AP-MS), in vitro peptide and protein binding assays, PSMD9 KO and rescue in HEK293 cells, UPR and lipid droplet assays |
The FEBS journal |
Medium |
37665644
|
| 2024 |
PSMD9 directly interacts with the E3 ubiquitin ligase c-Cbl, suppresses EGFR ubiquitination, and influences EGFR endosomal trafficking and degradation, thereby activating ERK1/2 and Akt signaling in hepatocellular carcinoma cells. PSMD9 knockdown sensitizes HCC cells to erlotinib. |
Co-immunoprecipitation, immunofluorescence confocal imaging, EGFR ubiquitination assay, siRNA knockdown, in vitro and in vivo tumor models |
Journal of experimental & clinical cancer research : CR |
Medium |
38745188
|
| 2025 |
PSMD9 directly interacts with DNAJA1 (a mitochondrial chaperone) via the EXKK motif in DNAJA1; the interaction was confirmed by in vitro binding with purified proteins and co-immunoprecipitation from MCF7 cells. Mutations in DNAJA1 disrupting the EXKK motif abolish binding. Upon proteasome inhibition, PSMD9-DNAJA1 interaction is enhanced and DNAJA1 stability increases. PSMD9 depletion leads to elevated mitochondrial membrane potential. |
In vitro binding assay with purified proteins, site-directed mutagenesis of DNAJA1, co-immunoprecipitation from MCF7 cells, mitochondrial membrane potential assay |
Biochemical and biophysical research communications |
Medium |
40412052
|