Affinage

IPO5

Importin-5 · UniProt O00410

Length
1097 aa
Mass
123.6 kDa
Annotated
2026-06-10
26 papers in source corpus 10 papers cited in narrative 10 extracted findings
Cross-family judge vs UniProt: Affinage preferred faithfulness: 6/6 claims corpus-supported (100%)

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

IPO5 (RanBP5/KPNB3) is an importin-beta family nuclear transport receptor that mediates the nuclear import of diverse cargoes by recognizing basic NLS sequences, coupling cargo binding and release to the RanGTP gradient (PMID:9271386, PMID:9687515). It was founded as a 124-kDa Ran-binding protein that binds RanGTP, stabilizes it against hydrolysis and exchange, associates with nuclear pore complexes, and assembles into a RanBP1-Ran-RanBP5 complex (PMID:9271386). As an import receptor it carries ribosomal proteins (L23a, S7, L5), binding the very basic region of rpL23a as an archetypal import signal (PMID:9687515), and it imports RNA-binding and signaling cargoes including CPEB3 (via its RRM1 domain) (PMID:22730302), Musashi-1 (PMID:25782991), and RASAL2, whose nuclear translocation activates RAS signaling in colorectal cancer cells (PMID:31288861). Crystal and cryo-EM structures of human RanBP5 define the IMB3 karyopherin-beta architecture and show that cargo NLS elements, such as the unstructured influenza PB1 NLS, are engaged in a wrapped conformation (PMID:32222384, PMID:39536408). IPO5 is essential in vivo: global knockout causes early embryonic lethality and germline-specific deletion ablates germ cells and causes meiotic failure (PMID:40652294). Viruses exploit IPO5 for nuclear trafficking, with the influenza A PA-PB1 heterodimer forming a stable complex in which polymerase RNA binding and import are mutually exclusive (PMID:27095520), and PCV2 capsid both imported and stabilized against proteasomal degradation by IPO5 (PMID:36409110).

Mechanistic history

Synthesis pass · year-by-year structured walk · 10 steps
  1. 1997 High

    Established IPO5 as a Ran-binding member of the importin-beta family, answering whether this novel protein operates within the Ran-dependent transport system.

    Evidence Overlay assay with RanGTP, yeast two-hybrid, in vitro binding and subcellular fractionation

    PMID:9271386

    Open questions at the time
    • No cargo identified at this stage
    • Directionality of transport (import vs export) not defined
  2. 1998 High

    Showed IPO5 acts as a bona fide import receptor for ribosomal proteins, identifying a basic NLS as the recognition signal and defining its physiological cargo class.

    Evidence In vitro reconstituted nuclear import assays and direct receptor-cargo binding in mammalian cells

    PMID:9687515

    Open questions at the time
    • Redundancy with importin-beta, transportin and RanBP7 leaves cargo specificity unresolved
    • No structural basis for NLS recognition
  3. 2012 Medium

    Linked IPO5 cargo handling to physiological signaling by showing NMDAR-driven RanBP1 changes modulate the CPEB3-IPO5 interaction, establishing regulated, signal-responsive import.

    Evidence Co-IP, domain mapping (RRM1) and NMDAR stimulation in neurons

    PMID:22730302

    Open questions at the time
    • Single lab
    • In vivo neuronal relevance not tested genetically
  4. 2015 Medium

    Extended the cargo repertoire to Musashi-1 and connected IPO5 to germline chromatin biology, showing its import activity has tissue-specific functional consequences.

    Evidence Co-IP, immunofluorescence and transgenic overexpression in mouse testis

    PMID:25782991

    Open questions at the time
    • Overexpression-based, not loss-of-function
    • NLS within MSI1 not mapped
  5. 2016 High

    Defined a viral hijacking mechanism by showing IPO5 binds the influenza PA-PB1 heterodimer and that import and polymerase RNA binding are mutually exclusive.

    Evidence Reconstituted complexes, SAXS modelling and in vitro RNA-binding assays

    PMID:27095520

    Open questions at the time
    • No atomic-resolution interface
    • Cellular import dynamics inferred from in vitro data
  6. 2019 Medium

    Connected IPO5-mediated import to oncogenic signaling by demonstrating it carries the RASAL2 NLS to activate RAS signaling in colorectal cancer.

    Evidence Mass spectrometry, Co-IP, fractionation, immunofluorescence and NLS mapping

    PMID:31288861

    Open questions at the time
    • Single lab
    • Causality between import and tumor progression not genetically dissected
  7. 2020 High

    Provided the first structural framework for human RanBP5, confirming IMB3 subfamily architecture and validating NLS docking through mutations that disrupt influenza PA-PB1 binding.

    Evidence X-ray crystallography of two ligand-free isoforms with point mutagenesis and protein complementation

    PMID:32222384

    Open questions at the time
    • Structures are ligand-free
    • Cargo-bound conformations not captured here
  8. 2022 High

    Revealed a dual function beyond transport by showing IPO5 imports PCV2 virions and stabilizes its capsid against proteasomal degradation, defining specific contact residues.

    Evidence GST pulldown, site-directed mutagenesis, knockdown, cycloheximide chase and proteasome inhibitor rescue

    PMID:36409110

    Open questions at the time
    • Mechanism of capsid stabilization not resolved
    • Whether stabilization extends to host cargoes unknown
  9. 2024 High

    Resolved how IPO5 engages an unstructured cargo NLS by cryo-EM, showing the influenza PB1 NLS is wrapped by RanBP5 and identifying critical interface residues.

    Evidence Cryo-EM at 3.2 Å of the RanBP5-PB1 NLS complex with interface mutagenesis

    PMID:39536408

    Open questions at the time
    • Structure limited to a viral NLS fragment
    • Host cargo recognition modes not directly compared
  10. 2025 High

    Defined the in vivo requirement for IPO5, showing it is essential for early embryogenesis and male germline/meiotic progression, and identified new binding partners.

    Evidence Conditional knockout mice (CMVCre, VasaCre, Stra8Cre) and IP-MS identifying SFPQ and XPO2

    PMID:40652294

    Open questions at the time
    • Cargoes responsible for the meiotic/embryonic phenotypes not established
    • Functional role of SFPQ and XPO2 interactions not characterized

Open questions

Synthesis pass · forward-looking unresolved questions
  • How IPO5 achieves cargo selectivity among overlapping importin-beta family receptors and which specific cargoes drive its essential developmental and germline functions remain unresolved.
  • No unified determinant of cargo specificity defined
  • Cargoes mediating embryonic lethality and meiotic failure unidentified
  • Physiological role of capsid-stabilization activity for endogenous substrates unknown

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Localization
GO:0005634 nucleus 3 GO:0005829 cytosol 1
Pathway
R-HSA-9609507 Protein localization 3 R-HSA-1474165 Reproduction 1
Complex memberships
RanBP1-Ran-RanBP5 complexinfluenza A PA-PB1-RanBP5 complex

Evidence

Reading pass · 10 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
1997 RanBP5 (IPO5) was identified as a novel 124-kDa Ran-binding protein related to importin-beta. It binds the GTP-bound form of Ran, stabilizing it against GTP hydrolysis and nucleotide exchange. RanBP5 forms a trimeric RanBP1-Ran-RanBP5 complex, with RanBP1 capable of relieving GAP resistance of the RanBP5-RanGTP complex. RanBP5 is a predominantly cytoplasmic protein that can bind to nuclear pore complexes. Overlay assay with RanGTP, yeast two-hybrid with RanBP1 as bait, biochemical binding assays, subcellular fractionation Molecular and cellular biology High 9271386
1998 RanBP5 (IPO5) directly binds and imports ribosomal proteins in mammalian cells. Ribosomal proteins L23a, S7, and L5 can each be imported alternatively by RanBP5 (alongside importin-beta, transportin, and RanBP7). RanBP5 binds to a very basic region of rpL23a that may represent an archetypal import signal. In vitro nuclear import assays in mammalian cells, direct binding assays between import receptors and ribosomal proteins The EMBO journal High 9687515
2012 IPO5 facilitates nuclear import of CPEB3 by binding directly to the RRM1 domain of CPEB3. NMDAR signaling increases RanBP1 expression and reduces cytoplasmic GTP-bound Ran levels, which enhances the CPEB3-IPO5 interaction and accelerates nuclear import of CPEB3 in neurons. Co-immunoprecipitation, domain mapping, subcellular fractionation, NMDAR stimulation experiments in neurons Nucleic acids research Medium 22730302
2015 IPO5 interacts with RNA-binding protein Musashi-1 (MSI1) and facilitates its nuclear translocation to the transcriptionally silenced XY chromatin domain in meiotic pachytene spermatocytes, resulting in release of MSI1 RNA-binding targets. Co-immunoprecipitation, immunofluorescence, transgenic overexpression model in mouse testis FASEB journal Medium 25782991
2016 IPO5 forms a stable, stoichiometric complex with the influenza A virus PA-PB1 heterodimer. The PA-PB1-RanBP5 complex can be modelled by SAXS and is no longer capable of 5'-vRNA binding, suggesting that nuclear import and RNA binding by the viral polymerase are mutually exclusive. Reconstitution of protein complexes, SAXS, in vitro RNA binding assays Scientific reports High 27095520
2019 IPO5 binds the NLS sequence of RASAL2 and mediates its nuclear translocation in colorectal cancer cells, which induces RAS signal activation and promotes cancer progression. Mass spectrometry, co-immunoprecipitation, subcellular fractionation, immunofluorescence, NLS mapping Journal of experimental & clinical cancer research Medium 31288861
2020 Crystal structures of two distinct isoforms of ligand-free human RanBP5 (IPO5) were solved, confirming the general architecture and mechanism of the IMB3 karyopherin-β subfamily while highlighting differences with the yeast orthologue Kap121p. Point mutations designed based on NLS docking suppress influenza PA-PB1 binding to RanBP5 in a binary protein complementation assay. X-ray crystallography, NLS docking, point mutagenesis, binary protein complementation assay Journal of molecular biology High 32222384
2022 IPO5 directly binds the capsid protein (Cap) of porcine circovirus type 2 (PCV2), with the N-terminal arginine24 of Cap being critical for binding to proline709 of IPO5. IPO5 promotes nuclear import of incoming PCV2 virions and also stabilizes the Cap protein against proteasome-mediated degradation. Co-immunoprecipitation combined with mass spectrometry, GST pulldown, site-directed mutagenesis, knockdown experiments, cycloheximide chase, proteasome inhibitor rescue Journal of virology High 36409110
2024 Cryo-EM structure at 3.2 Å resolution of the RanBP5-PB1 NLS domain complex reveals that the NLS domain of influenza PB1 lacks secondary structure and interacts with RanBP5 in a wrapped conformation. Biochemical analyses of mutants identified critical amino acid residues mediating complex binding. Cryo-EM structure determination at 3.2 Å, biochemical mutagenesis of binding interface Biochemical and biophysical research communications High 39536408
2025 Global IPO5 knockout in mice is lethal at early embryogenesis (no null embryos at E12.5). Germline-specific deletion using VasaCre causes complete loss of germ cells in adult testes but does not affect oocyte development or female fertility. Stra8Cre-directed IPO5 deletion causes meiotic failure. Novel IPO5-binding proteins identified by immunoprecipitation/mass spectrometry include SFPQ in fetal testes and XPO2 (exportin 2) in spermatocytes and spermatids. Conditional knockout mice (CMVCre, VasaCre, Stra8Cre), immunoprecipitation followed by mass spectrometry Biology of reproduction High 40652294

Source papers

Stage 0 corpus · 26 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
1998 Importin beta, transportin, RanBP5 and RanBP7 mediate nuclear import of ribosomal proteins in mammalian cells. The EMBO journal 432 9687515
1998 Phosphorylation regulates association of the transcription factor Pho4 with its import receptor Pse1/Kap121. Genes & development 206 9732266
1997 Ran-binding protein 5 (RanBP5) is related to the nuclear transport factor importin-beta but interacts differently with RanBP1. Molecular and cellular biology 75 9271386
1999 Multidrug-resistant human and animal Salmonella typhimurium isolates in France belong predominantly to a DT104 clone with the chromosome- and integron-encoded beta-lactamase PSE-1. The Journal of infectious diseases 63 10191220
1990 The human U1 snRNA promoter correctly initiates transcription in vitro and is activated by PSE1. Genes & development 47 2125285
1991 Sequence of the PSE-1 beta-lactamase gene. Antimicrobial agents and chemotherapy 44 1804019
2012 NMDAR signaling facilitates the IPO5-mediated nuclear import of CPEB3. Nucleic acids research 42 22730302
2001 Pse1/Kap121-dependent nuclear localization of the major yeast multidrug resistance (MDR) transcription factor Pdr1. Molecular microbiology 41 11136452
2014 Molecular Screening of Keratoconus Susceptibility Sequence Variants in VSX1, TGFBI, DOCK9, STK24, and IPO5 Genes in Polish Patients and Novel TGFBI Variant Identification. Ophthalmic genetics 39 24940934
2019 IPO5 promotes the proliferation and tumourigenicity of colorectal cancer cells by mediating RASAL2 nuclear transportation. Journal of experimental & clinical cancer research : CR 36 31288861
2011 Simultaneous saccharification and fermentation of Kanlow switchgrass by thermotolerant Kluyveromyces marxianus IMB3: the effect of enzyme loading, temperature and higher solid loadings. Bioresource technology 36 21955879
1992 Screening and identification of a gene, PSE-1, that affects protein secretion in Saccharomyces cerevisiae. Journal of cell science 36 1522152
2015 RNA binding protein Musashi-1 directly targets Msi2 and Erh during early testis germ cell development and interacts with IPO5 upon translocation to the nucleus. FASEB journal : official publication of the Federation of American Societies for Experimental Biology 27 25782991
2016 Structural characterization of recombinant IAV polymerase reveals a stable complex between viral PA-PB1 heterodimer and host RanBP5. Scientific reports 24 27095520
2015 The ß-importin KAP8 (Pse1/Kap121) is required for nuclear import of the cellulase transcriptional regulator XYR1, asexual sporulation and stress resistance in Trichoderma reesei. Molecular microbiology 19 25626518
2022 IPO5 Mediates EMT and Promotes Esophageal Cancer Development through the RAS-ERK Pathway. Oxidative medicine and cellular longevity 18 36120598
2006 A combined effect of the KPNA3 and KPNB3 genes on susceptibility to schizophrenia. Neuroscience letters 12 16644122
2020 X-ray Structure of the Human Karyopherin RanBP5, an Essential Factor for Influenza Polymerase Nuclear Trafficking. Journal of molecular biology 9 32222384
2020 IPO5 promotes malignant progression of esophageal cancer through activating MMP7. European review for medical and pharmacological sciences 8 32373960
2019 Novel influenza inhibitors designed to target PB1 interactions with host importin RanBP5. Antiviral research 7 30742842
2002 Iminodiacetate and nitrilotriacetate degradation by Kluyveromyces marxianus IMB3. Biochemical and biophysical research communications 7 11785972
2022 Porcine Circovirus Type 2 Hijacks Host IPO5 to Sustain the Intracytoplasmic Stability of Its Capsid Protein. Journal of virology 6 36409110
2024 Structural insights into Influenza A virus RNA polymerase PB1 binding to nuclear import host factor RanBP5. Biochemical and biophysical research communications 3 39536408
2010 Genetic and functional study of the IPO5 gene in schizophrenia. Psychiatry research 2 20542336
1996 Short communication: Ethanol production from cellulose at 45°C using a batch-fed system containing alginate-immobilized Kluyveromyces marxianus IMB3. World journal of microbiology & biotechnology 2 24415101
2025 The nuclear transport factor IPO5 revealed as a critical mediator of male germline development†. Biology of reproduction 1 40652294

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