| 2001 |
HMGA1 proteins bind preferentially to the narrow minor groove of AT-rich DNA sequences via conserved peptide motifs called 'AT hooks', and can also interact with various protein transcription factors both in vitro and in vivo, forming stereospecific multiprotein complexes ('enhanceosomes') on gene promoter/enhancer regions. The proteins have little secondary structure in solution but assume distinct conformations when bound to DNA or other proteins. |
In vitro DNA binding assays, protein-protein interaction studies, structural analysis |
Biochimica et biophysica acta |
High |
11406267
|
| 1993 |
The human HMG-I(Y) gene produces HMG-I and HMG-Y isoform proteins via alternative splicing of precursor mRNAs, with each of the three different DNA-binding AT-hook domains encoded by sequences on separate exons. Gene transcription is inducible in human lymphoid cells by phorbol esters and calcium ionophores. |
Gene cloning, sequencing, RT-PCR, chromosomal localization, induction experiments |
Nucleic acids research |
High |
8414980
|
| 2001 |
HMGA1(Y) protein directly binds to AT-rich sequences in the 5' regulatory region of the human insulin receptor (INSR) gene, and is required for proper transcription of the INSR gene. Antisense HMGA1(Y) specifically inhibits insulin receptor promoter function and insulin receptor protein expression. |
Chromatographic purification, EMSA, immunoblot, CAT reporter gene assay, hormone binding studies with antisense RNA cells |
FASEB journal |
High |
11156965
|
| 2001 |
HMGA1b protein overexpression deregulates the cell cycle (cells enter S-phase earlier, G2-M transition delayed) and induces apoptosis through caspase-3 activation in normal rat thyroid cells. The third AT-hook domain and acetylation site K60 are required for induction of apoptosis. |
Overexpression in PC Cl 3 cells, cell cycle analysis, apoptosis assays, caspase-3 activity measurement, site-directed mutagenesis of AT-hook domain and K60 acetylation site |
Cancer research |
High |
11389094
|
| 1995 |
HMG-I(Y) proteins are in vivo substrates for cell cycle-regulated Cdc2 kinase, which phosphorylates the DNA-binding domain(s), decreasing their substrate binding affinity. This reversible phosphorylation during the cell cycle regulates HMGA1 biological function. |
In vivo and in vitro kinase assays, DNA binding assays |
Progress in cell cycle research |
Medium |
9552376
|
| 2002 |
HMGA1 protein synthesis is required for thyroid cell transformation by Kirsten murine sarcoma virus. Blockage of HMGA1 via antisense construct prevents the malignant phenotype (anchorage-independent growth, tumor formation) and correlates with absence of AP-1 transcriptional activity induction. |
Antisense HMGA1 cDNA transfection, soft agar colony formation assay, tumor formation in athymic mice, AP-1 reporter assay |
Oncogene |
High |
12082527
|
| 2003 |
HMGA1 proteins directly control GATA-1 transcription, negatively regulating it. Loss of HMGA1 in embryonic stem cells causes overexpression of GATA-1, resulting in altered hematopoietic differentiation (reduced monocyte/macrophage population, increased megakaryocyte precursors, increased erythropoiesis). Re-expression of HMGA1 in null ES cells restores wild-type phenotype. |
Hmga1-null ES cell differentiation assays, gene expression analysis, re-expression rescue experiment |
FASEB journal |
High |
12824305
|
| 2006 |
HMGA1 directly regulates cardiomyocytic cell growth; haploinsufficiency of Hmga1 in mice causes cardiac hypertrophy. HMGA1 loss also leads to increased RAG1/2 endonuclease expression, abnormal IgH rearrangements, B cell expansion, and hematologic malignancies (B cell lymphoma and myeloid leukemia). |
Hmga1 heterozygous and homozygous knockout mice, cardiac phenotyping, hematologic analysis, gene expression studies |
Cancer research |
High |
16510570
|
| 2007 |
HMGA1 physically binds the small pocket domain of retinoblastoma protein (RB) and competes with HDAC1 for RB binding. HMGA1 overexpression abolishes RB-mediated repression of E2F-activated transcription from the cyclin E promoter and abrogates RB-mediated G0 arrest under serum starvation. |
Co-immunoprecipitation, reporter gene assay (cyclin E promoter), serum starvation G0 arrest assay, overexpression in T98G cells |
Cancer science |
High |
17877762
|
| 2008 |
HMGA1 protein is a novel target of the ATM kinase. An SQ motif on HMGA1 is effectively phosphorylated by ATM in vitro and in vivo. HMGA1 colocalizes with activated ATM (ATM S1981p) and HMGA1 ectopic expression decreases cell survival following ionizing radiation. |
In vitro and in vivo kinase assays, confocal microscopy colocalization, clonogenic survival assay after ionizing radiation |
European journal of cancer |
High |
18783938
|
| 2009 |
HMGA1 physically interacts with retinoblastoma protein (RB), C/EBPbeta, and HDAC1. The HMGA1/RB interaction is required for adipocyte differentiation: HMGA1 displaces HDAC1 from the RB-E2F1 complex, enabling CDC25A and CDC6 promoter activation. RB, C/EBPbeta, and HMGA1 cooperate to regulate Id1 and leptin gene transcription. Hmga1-/- ES cells fail to undergo adipocyte differentiation. |
Co-immunoprecipitation, reporter gene assays (leptin, Id1, CDC25A, CDC6 promoters), Hmga1-/- ES cell differentiation assay |
The Journal of biological chemistry |
High |
19633359
|
| 2009 |
HMGA1 reversibly migrates from nuclei to mitochondria during late S/G2 phases of the cell cycle in normal cells, where it binds mitochondrial DNA (mtDNA). In cancer cells, this controlled shuttling is lost and HMGA1 is found in mitochondria throughout the cell cycle. Elevated HMGA1 levels inversely correlate with mtDNA levels and mitochondrial mass, increase reactive oxygen species (ROS), and decrease efficiency of oxidatively damaged mtDNA repair. |
Inducible transgenic HMGA1 expression system in MCF-7 cells, mitochondrial fractionation, mtDNA quantification, ROS measurement, mtDNA repair assay |
Molecular and cellular biology |
High |
19687300
|
| 2010 |
HMGA1 is a positive regulator of IGF-IR gene transcription. HMGA1 binds directly to the IGF-IR promoter (ChIP assay) and associates with p53 and Sp1. HMGA1 antagonizes p53 inhibitory activity while enhancing Sp1 stimulatory activity on the igf-ir promoter. Silencing HMGA1 decreases IGF-IR expression; forced HMGA1 overexpression increases it. |
ChIP assay, promoter activity assays, Co-immunoprecipitation (association with p53 and Sp1), siRNA knockdown and overexpression |
European journal of cancer |
High |
20335021
|
| 2010 |
7SK small nuclear RNA directly interacts with HMGA1, specifically through the loop 2 (7SK L2) region binding to the first AT-hook motif of HMGA1, competing with DNA binding to the same domain. This interaction regulates over 1500 HMGA1 target genes and affects HMGA1-dependent cell differentiation and proliferation. |
RNA-protein interaction assays, transcriptome-wide profiling, 7SK substructure inhibition experiments |
Nucleic acids research |
High |
21087998
|
| 2011 |
HMGA1 and P-TEFb cooperate in transcriptional activation of select target genes. 7SK RNA complexes containing simultaneously HMGA1 and P-TEFb were identified. 7SK RNA establishes gene-dependent plasticity between HMGA1 chromatin remodeling/transcription initiation and P-TEFb transcription elongation. |
Transcriptome profiling, dominant-negative Cdk9 inhibition, RNA immunoprecipitation of 7SK complexes containing both HMGA1 and P-TEFb |
RNA biology |
Medium |
21957495
|
| 2011 |
HMGA1a can cross-link different DNA molecules simultaneously through a novel DNA cross-linking domain identified by point mutagenesis. Overexpression of HMGA1a-eGFP causes chromatin aggregation. Electron microscopy showed HMGA1 creates DNA loops and supercoils in linearized DNA. |
dSTORM super-resolution microscopy, DNA cross-linking assay, point mutagenesis, electron microscopy |
Nucleic acids research |
High |
21596776
|
| 2012 |
HMGA1 binds directly to the COX-2 promoter at an AT-rich region in vivo in pancreatic cancer cell lines (ChIP assay) and induces COX-2 expression. Knockdown of HMGA1 represses COX-2. HMGA1 cooperates with activated K-RAS to induce migration, invasion, and anchorage-independent growth. |
ChIP assay (in vivo promoter binding), siRNA knockdown, overexpression, migration/invasion assays, xenograft tumor formation |
Pancreatology |
High |
22898640
|
| 2013 |
HMGA1 specifically binds to the HIV-1 TAR element, with the binding interface overlapping the Tat binding site. HMGA1 and Tat compete for TAR binding. 7SK RNA competes with TAR for HMGA1. HMGA1 negatively influences expression from HIV-1 promoter in a TAR-dependent manner in the presence and absence of Tat. |
RNA binding assays, competition experiments, HIV-1 promoter reporter assays, HMGA1 knockdown |
RNA biology |
Medium |
23392246
|
| 2014 |
HMGA1 recruits the inactive 7SK/P-TEFb snRNP to cellular gene promoters and the HIV-1 promoter. CTIP2 represses P-TEFb activity in a complex containing 7SK RNA and HEXIM1. HMGA1 knockdown causes loss of CTIP2/7SK/P-TEFb snRNP recruitment to these promoters as shown by ChIP. |
Chromatin immunoprecipitation (ChIP), siRNA double knockdown, luciferase reporter assay |
Nucleic acids research |
High |
24623795
|
| 2015 |
HMGA1 proteins are able to increase the expression of spindle assembly checkpoint (SAC) genes Ttk, Mad2l1, Bub1, and Bub1b by binding to their promoter regions. HMGA1 depletion causes SAC gene downregulation and mitotic defects including unaligned chromosomes in metaphase, reduced prometaphase time, delayed anaphase, and cytokinesis failure. |
ChIP assay (promoter binding), siRNA knockdown, live-cell microscopy, gene expression analysis |
Oncotarget |
High |
26009897
|
| 2016 |
miR-296-5p is repressed in a DNA methylation-dependent manner in glioblastoma stem cells. HMGA1 functions as a downstream effector of miR-296-5p and regulates Sox2 expression by modifying chromatin architecture at the Sox2 promoter, thereby regulating glioblastoma stem cell self-renewal. |
miR-296-5p overexpression/inhibition, HMGA1 knockdown, chromatin architecture assay at Sox2 promoter, glioma xenograft model |
Oncogene |
Medium |
26898758
|
| 2016 |
miR-26 silences HMGA1 (and MALT1), thereby dampening NF-κB signaling and TNF-α-induced IL-6 transcription. Knocking down both HMGA1 and MALT1 by RNAi produces NF-κB gene silencing similar to miR-26 overexpression. |
Transcriptome-wide miR-26 manipulation, RNAi knockdown of HMGA1 and MALT1, NF-κB reporter assay, IL-6 expression analysis |
Nucleic acids research |
Medium |
27025651
|
| 2017 |
Hmga1 amplifies Wnt/β-catenin signaling to enhance intestinal stem cell self-renewal by upregulating genes encoding Wnt agonist receptors and downstream Wnt effectors. Hmga1 also directly induces Sox9, which is required for Paneth cell differentiation, thereby 'building' an intestinal stem cell niche. |
Hmga1 transgenic mouse model, gene expression analysis (RNA-seq), ChIP, intestinal organoid assays, in vivo tumor/crypt analysis |
Nature communications |
High |
28452345
|
| 2017 |
HMGA1 is a novel transcriptional regulator of the FoxO1 gene. HMGA1 binds directly to the FoxO1 gene promoter (ChIP) and activates FoxO1 gene transcription, increasing FoxO1 mRNA and protein levels in hepatocytes. Forced HMGA1 expression in Hmga1-/- primary hepatocytes rescues FoxO1 expression. |
Reporter gene assays, ChIP, qRT-PCR, Western blot, primary hepatocyte culture from Hmga1-/- mice, siRNA knockdown |
Endocrine |
High |
29052178
|
| 2017 |
G9a/EHMT2 histone methyltransferase modulates hepatic insulin signaling through regulation of HMGA1 expression. G9a knockdown reduces HMGA1 levels and impairs insulin receptor/AKT signaling; overexpression of HMGA1 normalizes impaired insulin signaling in G9a knockdown cells. In db/db mice, restoring G9a upregulates HMGA1 and improves hepatic insulin signaling. |
G9a siRNA knockdown, HMGA1 overexpression rescue, insulin signaling assays (p-AKT, insulin receptor), in vivo db/db mouse model |
Biochimica et biophysica acta. Molecular basis of disease |
Medium |
29101051
|
| 2017 |
HMGA1 directly regulates the transcription of PLAU (urokinase) and SERPINE1 (PAI-1), key components of the Plasminogen activation system. HMGA1 silencing alters the breast cancer cell secretome, reducing pro-migratory and pro-invasive secreted factors. |
Inducible HMGA1 silencing, iTRAQ LC-MS/MS secretome profiling, promoter binding assays |
Scientific reports |
Medium |
28924209
|
| 2018 |
Extracellular HMGA1 (eHMGA1) becomes a ligand for the receptor RAGE (Advanced glycosylation end product-specific receptor), inducing pERK signaling and increasing migration and invasion of triple-negative breast cancer cells. Antibodies blocking HMGA1 in the extracellular space impair migration and invasion. |
HMGA1-blocking antibodies, RAGE receptor binding assays, pERK signaling assay, migration/invasion assays, xenograft models, fluorescence microscopy |
Clinical cancer research |
High |
30135148
|
| 2019 |
PD-L1 directly interacts with HMGA1 in colorectal cancer cells, and HMGA1 upregulation by PD-L1 activates PI3K/Akt and MEK/ERK pathways to promote cancer stem cell expansion and self-renewal. HMGA1 downregulation rescues PD-L1-induced cancer stem cell phenotypes. |
Co-immunoprecipitation (PD-L1-HMGA1 interaction), Western blot (pathway analysis), tumorsphere assays, HMGA1 knockdown rescue experiments, xenograft mouse model |
Cancer letters |
Medium |
30776481
|
| 2019 |
HMGA1 negatively regulates NUMB expression at both transcriptional and post-transcriptional levels in glioblastoma stem cells. At the transcriptional level, HMGA1 binds the NUMB promoter and counteracts C/EBP-β. At the post-transcriptional level, HMGA1 regulates MSI1 and miR-146a expression. HMGA1 knockdown-induced NUMB upregulation leads to downregulation of the NOTCH1 pathway. |
ChIP (HMGA1 binding to NUMB promoter), C/EBP-β competition assay, miR-146a/MSI1 expression analysis, shRNA knockdown, NOTCH1 pathway analysis |
Cell cycle |
Medium |
31116627
|
| 2020 |
HMGA1 overexpression in cardiomyocytes aggravates LPS-induced inflammation and apoptosis by upregulating cyclooxygenase-2 (COX-2). COX-2 inhibitor alleviates this aggravation. HMGA1 knockdown attenuates inflammation but aggravates apoptosis via downregulation of STAT3; STAT3 agonist reverses the anti-inflammatory effect of HMGA1 knockdown but ameliorates LPS-induced apoptosis. |
Adeno-associated virus-mediated HMGA1 overexpression in mouse heart, siRNA knockdown in H9c2 cells, COX-2 inhibitor treatment, STAT3 agonist treatment, LPS stimulation, cardiac function assay |
International journal of biological sciences |
Medium |
32398950
|
| 2021 |
HMGA1 transcriptionally activates RAD51 by binding directly to its promoter through two HMGA1 response elements. HMGA1 overexpression promotes radioresistance in cholangiocarcinoma, while HMGA1 knockdown causes radiosensitivity. Inhibition of RAD51 reverses the effect of HMGA1 on radioresistance. |
ChIP assay (HMGA1 binding to RAD51 promoter through response elements), RAD51 inhibition rescue experiments, clonogenic survival assay after X-ray irradiation, overexpression/knockdown experiments |
Cell death discovery |
High |
34716319
|
| 2022 |
HMGA1 chromatin regulators transactivate GATA2 through sequences near the developmental +9.5 enhancer, increasing chromatin accessibility and recruiting active histone marks (H3K4me3, H3K27Ac). Silencing GATA2 recapitulates most phenotypes of HMGA1 depletion in MPN, and GATA2 re-expression partially rescues leukemogenesis. HMGA1 depletion prevents MPN progression to myelofibrosis in JAK2V617F mice. |
CRISPR/Cas9, shRNA, and genetic deletion; RNA-sequencing; ChIP-sequencing (HMGA1 occupancy and histone marks); JAK2V617F mouse model; GATA2 rescue experiments |
Blood |
High |
35286385
|
| 2023 |
HMGA1 directly induces FGF19 expression by recruiting active histone marks (H3K4me3, H3K27Ac) to the FGF19 gene, increasing FGF19 secretion. Disrupting FGF19 (by gene silencing or FGFR4 inhibitor BLU9931) recapitulates HMGA1 deficiency phenotypes: decreased tumor growth and reduced desmoplastic stroma formation in pancreatic cancer models. |
RNA-sequencing, ChIP (HMGA1 binding and histone marks at FGF19), siRNA gene silencing, FGFR4 inhibitor treatment, KPC mouse model, orthotopic/subcutaneous xenograft models |
The Journal of clinical investigation |
High |
36919699
|
| 2024 |
HMGA1 acts as a chromatin remodeling factor that promotes binding of activating transcription factor 4 (ATF4) to the SLC7A11 promoter, enhancing SLC7A11 transcription and maintaining intracellular glutathione homeostasis, thereby suppressing ferroptosis and conferring cisplatin resistance in esophageal squamous cell carcinoma. |
Transcriptome analysis, ChIP assay (HMGA1 and ATF4 at SLC7A11 promoter), ferroptosis assays (MDA measurement, glutathione levels), HMGA1 knockout in syngeneic allograft and genetically engineered mouse models |
Cell death & disease |
High |
38383528
|
| 2024 |
HMGA1 increases transcriptional activity of SREBP1 on the FASN promoter, leading to increased lipid accumulation and fatty acid synthesis. Conditional knockout of Hmga1 in intestinal epithelium reduces FASN expression and tumor development in a CRC mouse model, while pharmacological FASN inhibition by orlistat reduces tumor growth in HMGA1-overexpressing mice. |
Conditional knockout (Hmga1△IEC) and knock-in (Hmga1IEC-OE/+) mouse models, AOM/DSS-induced CRC model, dual-luciferase reporter assay (FASN promoter), Western blot, orlistat treatment |
Nature communications |
High |
39548107
|
| 2024 |
NAT10 enhances HMGA1 mRNA stability by catalyzing N4-acetylcytidine (ac4C) modification of HMGA1 mRNA, thereby promoting cell cycle progression and prostate cancer cell proliferation. |
ac4C acetylation assays, mRNA stability assays, NAT10 knockdown/overexpression, prostate cancer cell proliferation assays |
Advanced science |
Medium |
38922788
|
| 2024 |
HMGA1 drives a specific 3D chromatin organization: HMGA1-dense loci form highly interactive networks, sequestering genes into 3D networks. HMGA1 heterogeneous linear distribution controls high-order chromatin compartmentalization. In the absence of HMGA1, this 3D organization is largely reversed and inflammatory senescence-associated secretory phenotype (SASP) signaling is amplified. |
Functional genomics (ChIP-seq, Hi-C/3D genome analysis), graph theory analysis, oncogene-induced senescence model, HMGA1 depletion |
Nature communications |
High |
39134516
|
| 2021 |
GRP75 directly binds to HMGA1 protein and inhibits ubiquitination-mediated HMGA1 degradation, thereby stabilizing HMGA1 and causing its upregulation. The GRP75/HMGA1 axis activates JNK/c-JUN signaling in lung adenocarcinoma. |
Co-immunoprecipitation (GRP75-HMGA1 interaction), ubiquitination assay, GRP75/HMGA1 overexpression and knockdown, JNK/c-JUN pathway analysis, mRNA-sequencing |
Thoracic cancer |
Medium |
33755320
|
| 2019 |
HMGA1 promotes expression of miR-222, which in turn activates PI3K/Akt/MMP9 pathway in uveal melanoma. HMGA1 positively regulates both miR-222 and the PI3K/Akt/MMP9 pathway components in vitro and in vivo. |
Western blotting, RT-PCR, immunochemistry, xenograft mouse model, miR-222 mimic/inhibitor transfection |
Cellular signalling |
Medium |
31394192
|
| 2016 |
HMGA1 is a polymorphic regulator of VEGFA expression. The HMGA1 rs139876191 variant adversely affects HMGA1 protein expression and function, leading to downregulation of VEGFA expression and protection against proliferative diabetic retinopathy. |
Case-control association study, HMGA1 variant functional analysis, VEGFA expression assays |
Scientific reports |
Medium |
27991577
|
| 2007 |
HMGA1 is required for maximal activation of the CRYAB (alphaB-crystallin) promoter by the SWI/SNF chromatin remodeling complex BRG1. HMGA1 binds in vitro and in vivo to an AT-rich sequence within a 30 bp BRG1-response element located at the edge of a positioned nucleosome upstream of the transcription start site. |
ChIP (HMGA1 binding in vivo), in vitro DNA binding assays, HMGA1 knockdown, promoter mutational analysis, BRG1 overexpression |
DNA and cell biology |
Medium |
17723105
|
| 2022 |
HMGA1 promotes macrophage recruitment in hepatocellular carcinoma by activating NF-κB signaling, which in turn drives CCL2 expression. Pharmacological or genetic inhibition of NF-κB blocks CCL2 upregulation in HMGA1-overexpressing HCC cells. Macrophage depletion with clodronate liposomes abrogates the tumor-promoting effects of HMGA1. |
NF-κB pharmacological/genetic inhibition, CCL2 quantification (ELISA, qRT-PCR, Western blot), clodronate liposome macrophage depletion, orthotopic HCC xenograft model |
Journal of immunology research |
Medium |
35785026
|