| 1998 |
MacroH2A1 (mH2A1) is a core histone variant whose amino-terminal third resembles histone H2A; the mH2A1.2 subtype is preferentially concentrated on the inactive X chromosome (Xi) of female mammals, linking X inactivation to a major alteration of the nucleosome. |
Immunofluorescence, gene cloning, protein characterization |
Nature |
High |
9634239
|
| 1999 |
MacroH2A1.2 relocalization to the inactive X chromosome occurs after initiation and propagation of X-inactivation in differentiating murine ES cells (around day 7–9), in a synchronized wave, indicating it is not required for initiation of random X-inactivation but is precisely regulated. |
Immuno-RNA FISH on differentiating ES cells |
The Journal of cell biology |
High |
10613899
|
| 2000 |
MacroH2A1 is stored at centrosomes in undifferentiated ES cells as a non-chromatin-associated pool, and upon differentiation of female ES cells, centrosomal macroH2A1 is dynamically redistributed to the Xi, coinciding with Xist RNA stabilization. |
Immunofluorescence, cell fractionation, nocodazole treatment |
The Journal of cell biology |
High |
10974005
|
| 2001 |
MacroH2A1.2 co-localizes with HP1beta (M31) at the pseudoautosomal region (PAR) and at centromeric heterochromatin in male meiocytes, suggesting cooperation between these two proteins in meiotic sex chromosome inactivation. |
Immunofluorescence on surface-spread meiocytes from mouse testis and ovary |
Journal of cell science |
Medium |
11591824
|
| 2001 |
MacroH2A1.2 associates stably with centrosomes in somatic cells (both XX and XY, interphase and mitosis) and co-purifies with centrosomes isolated from human lymphoblasts, indicating a centrosomal pool in addition to the chromatin-associated pool. |
Indirect immunofluorescence, biochemical centrosome purification and co-purification |
Experimental cell research |
Medium |
11478850
|
| 2002 |
Recombinant macroH2A1.2 can substitute for both conventional H2A molecules in reconstituted nucleosomes; these macroH2A1.2-containing nucleosomes show increased resistance to DNase I cleavage at the nucleosomal midpoint and a greater tendency toward internucleosomal interactions. |
In vitro nucleosome reconstitution, sedimentation, micrococcal nuclease and DNase I digestion |
Biochemistry |
High |
11772015
|
| 2002 |
The non-histone macrodomain of macroH2A1.2 binds directly to nuclear speckle protein SPOP through SPOP's MATH domain interacting with the leucine zipper-like region of macroH2A1.2. |
Yeast two-hybrid screen, GST pulldown with domain mapping |
Biochimica et biophysica acta |
Medium |
12183056
|
| 2005 |
MacroH2A1.2 is monoubiquitinated in vivo at Lys115 (and Lys116) of its histone domain, and is additionally methylated at Lys17, Lys122, and Lys238, and phosphorylated at Thr128, as determined by mass spectrometry of GFP-tagged and endogenous protein. |
Tandem mass spectrometry of GFP-tagged and endogenous macroH2A1.2 |
Molecular & cellular proteomics |
High |
16129414 16210244
|
| 2005 |
The CULLIN3/SPOP ubiquitin E3 ligase complex ubiquitinates macroH2A1 and the Polycomb protein BMI1; RNAi knockdown of CULLIN3 or SPOP causes loss of macroH2A1 from the Xi and promotes Xi reactivation in the presence of DNA methylation and HDAC inhibitors, demonstrating that CULLIN3/SPOP regulates macroH2A1 deposition and that macroH2A1 contributes to stable X inactivation. |
RNAi knockdown, immunofluorescence, Xi reactivation assay, ubiquitination assay |
Proceedings of the National Academy of Sciences |
High |
15897469
|
| 2006 |
MacroH2A1 is depleted from transcribed regions of active genes and enriched on the inactive X chromosome in mouse liver chromatin; heterochromatin protein HP1beta co-purifies with macroH2A1-containing chromatin fragments. |
Thiol affinity chromatography of macroH2A1-containing chromatin, ChIP, co-purification |
Molecular and cellular biology |
Medium |
16738309
|
| 2006 |
MacroH2A1 is preferentially deposited at methylated CpG-rich regions at imprinting control regions (ICRs) of multiple imprinted domains (Xist, Peg3, H19/Igf2, Gtl2/Dlk1, Gnas), showing allele-specific enrichment toward the inactive/methylated parental allele, indicating macroH2A1 is a component of ICR chromatin. |
ChIP with allele-specific analysis at multiple imprinted loci |
Human molecular genetics |
Medium |
16421169
|
| 2007 |
MacroH2A1 knockout mice are viable and fertile; knockout liver shows increased expression of genes with macroH2A1-enriched nucleosomes on their coding/upstream regions, particularly lipid metabolism genes, demonstrating macroH2A1 functions as a direct transcriptional repressor of a specific gene set in adult liver. |
MacroH2A1 knockout mouse, gene expression arrays, ChIP |
Molecular and cellular biology |
High |
17242180
|
| 2007 |
Multiple short sequences dispersed along the macroH2A1 histone domain (mapping to the macroH2A1/H2B dimer surface) are each individually sufficient to direct enrichment on the inactive X chromosome when introduced into canonical H2A. |
Chimeric H2A/macroH2A1 constructs expressed in female cells, immunofluorescence |
Journal of molecular biology |
Medium |
17570398
|
| 2008 |
A phosphorylated subpopulation of macroH2A1 at Ser137 (S137ph) within the hinge region is excluded from the inactive X chromosome and enriched during mitosis in both male and female cells, suggesting a cell-cycle-specific function distinct from X inactivation. |
Mass spectrometry of purified endogenous macroH2A1, specific S137ph antibody, immunofluorescence |
Proceedings of the National Academy of Sciences |
High |
18227505
|
| 2008 |
MacroH2A1 histone variants are required for silencing endogenous murine leukemia viruses (MLVs) in mouse liver; macroH2A1-enriched nucleosomes preferentially occupy the 5' end of pro-pol in MLV proviruses; absence of macroH2A1 also leads to localized loss of DNA methylation on MLV 5' ends. |
MacroH2A1 knockout mouse, RT-qPCR, ChIP, bisulfite sequencing |
Molecular and cellular biology |
High |
18195046
|
| 2009 |
MacroH2A1 occupies large autosomal chromatin domains (>500 kb) marked by H3K27me3 repressive marks; however, when located in the transcribed regions of a subset of developmental and signaling genes, macroH2A1 positively regulates their expression, including augmenting serum starvation-responsive transcription. |
ChIP-chip (genome-wide), gene expression analysis, siRNA knockdown in IMR90 and MCF-7 cells |
Genes & development |
High |
20008927
|
| 2010 |
Genome-wide mapping in mouse liver shows macroH2A1 nucleosomes are depleted from transcribed regions of active genes in sharply defined domains, uniformly enriched ~4-fold on the inactive X chromosome (absent from escape regions), and enriched on lipid metabolism genes that are repressed by macroH2A1. |
ChIP with high-throughput sequencing (ChIP-seq) in mouse liver |
Molecular and cellular biology |
High |
20937776
|
| 2010 |
Deletion of macroH2A1 (H2afy) in female mice causes hepatic steatosis in ~50% of homozygous females; macroH2A1 is enriched at the Tbg promoter in wild-type females, and its absence leads to upregulation of X-linked Tbg gene, suggesting a direct sex-specific epigenetic regulation of lipid metabolism. |
Knockout mouse model, ChIP, RT-qPCR, histopathology |
Epigenetics & chromatin |
Medium |
20359320
|
| 2010 |
MacroH2A1 knockdown, combined with DNA demethylation, significantly enhances reactivation of silenced tumor suppressor genes (p16/CDKN2A, MLH1, Timp3), demonstrating synergism between macroH2A1 occupancy and DNA methylation in maintaining epigenetic silencing. |
RNAi knockdown, 5-aza-dC treatment, RT-qPCR in cancer cell lines, ChIP |
Nucleic acids research |
Medium |
21030442
|
| 2011 |
MacroH2A1.2 directly interacts with and suppresses VRK1 kinase during interphase, preventing premature histone H3 phosphorylation; this interaction was mapped by NMR spectroscopy and macroH2A1.2 levels are reduced in mitosis. |
NMR spectroscopy, co-immunoprecipitation, kinase activity assay, cell cycle analysis |
The Journal of biological chemistry |
Medium |
22194607
|
| 2011 |
Female ES cells doubly deficient for both macroH2A1 and macroH2A2 readily execute and maintain X chromosome inactivation upon differentiation, demonstrating that macroH2A variants are not required for XCI initiation or maintenance. |
Stable shRNA knockdown of both macroH2A1 and macroH2A2 in female ES cells, differentiation assays, immunofluorescence |
PloS one |
Medium |
21738686
|
| 2011 |
The RNA-binding protein QKI regulates alternative splicing of macroH2A1 pre-mRNA to increase macroH2A1.1 levels; macroH2A1.1 (but not macroH2A1.2) suppresses cancer cell proliferation in a manner requiring its ability to bind NAD+-derived metabolites (including poly(ADP-ribose)), and this suppression involves reduction of PARP-1 protein levels. |
RNAi, overexpression, RT-qPCR, proliferation assays, splicing microarray analysis in multiple cancer types |
Molecular and cellular biology |
High |
21844227
|
| 2012 |
ATRX (SWI/SNF helicase) interacts with macroH2A and acts as a negative regulator of macroH2A's chromatin association; in ATRX-deficient human erythroleukemic cells, macroH2A accumulates at the HBA gene cluster, coinciding with loss of α-globin expression. |
Co-immunoprecipitation, ChIP-seq, ATRX-deficient cell lines |
Genes & development |
High |
22391447
|
| 2012 |
MacroH2A1.2 (but not macroH2A1.1) interacts with HER-2 protein in cancer cells through the macro domain of macroH2A1.2 (specifically the -EIS- insertion); macroH2A1.2 overexpression increases HER-2 expression and ERBB2 promoter occupancy, promoting tumorigenicity. |
Co-immunoprecipitation, domain mapping, ChIP, overexpression assays in cancer cell lines |
The Journal of biological chemistry |
Medium |
22589551
|
| 2012 |
MacroH2A1.1 is recruited to DNA double-strand breaks (DSBs) via a mechanism requiring PARP1 activity; it is not incorporated into nucleosomes at DSBs but associates with PARylated chromatin; cells lacking macroH2A1 show defective 53BP1 recruitment, impaired CHK2 activation, and increased radiosensitivity. |
Laser micro-irradiation, immunofluorescence, PARP1 inhibitor treatment, PARP1 knockdown, radiosensitivity assay, CHK2 phosphorylation assay |
FEBS letters |
High |
23031826
|
| 2013 |
MacroH2A1 is present at the promoter of methylated rDNA genes and represses rDNA transcription; its knockdown causes up to 5-fold increase in pre-rRNA levels with increased RNA polymerase I and UBF loading; inhibition of RNA Pol I transcription induces macroH2A1 recruitment to rDNA and nucleolar relocalization. |
RNAi knockdown, RT-qPCR, ChIP, RNA Pol I inhibition (actinomycin D), immunofluorescence in HeLa, HepG2, and mouse ES cells |
Nucleic acids research |
Medium |
24071584
|
| 2014 |
MacroH2A1.1, through interaction with PARP-1 (via its PAR-binding macrodomain), promotes CBP-mediated acetylation of H2B at K12 and K120, which regulates expression of macroH2A1-target genes; this regulation is specific to macroH2A1-containing acetylated chromatin and is commonly lost in cancer cells. |
Co-immunoprecipitation, RNA-seq, ChIP, in vitro acetylation assay, domain mutant analysis in primary human cells |
Nature structural & molecular biology |
High |
25306110
|
| 2015 |
MacroH2A1 is a critical component of the positive feedback loop maintaining SASP gene expression during oncogene-induced senescence; it undergoes genome-wide relocalization during OIS; ATM (activated by SASP-induced ER stress and reactive oxygen species) mediates removal of macroH2A1 from SASP gene chromatin, creating a negative feedback loop. |
ChIP-seq, RNAi, ATM inhibition, ER stress induction, OIS model in primary cells |
Molecular cell |
High |
26300260
|
| 2015 |
MacroH2A1 is a substrate of the SKP2 SCF E3 ubiquitin ligase complex; SKP2-mediated degradation of macroH2A1 promotes CDK8 gene and protein expression; CDK8 in turn regulates p27 via facilitating SKP2-mediated p27 ubiquitination, establishing a Skp2-macroH2A1-CDK8 axis controlling G2/M transition and tumorigenesis. |
Co-immunoprecipitation, ubiquitination assay, overexpression/knockdown, mouse tumor models (xenograft and transgenic) |
Nature communications |
High |
25818643
|
| 2016 |
MacroH2A1.2 is required for activation of the myogenic gene regulatory network and muscle cell differentiation; it regulates H3K27 acetylation at prospective muscle enhancers and is required for recruitment of the transcription factor Pbx1 to these enhancers. |
RNAi knockdown, ChIP-seq, RNA-seq, differentiation assays in C2C12 cells |
Cell reports |
High |
26832413
|
| 2017 |
MacroH2A1.1 inhibits basal PARP-1 activity through direct binding (via its NAD+-metabolite-binding macrodomain), limiting nuclear NAD+ consumption; this increases the NAD+ precursor NMN, maintaining mitochondrial NAD+ pools critical for respiration; macroH2A1.1 is induced during myogenic differentiation via alternative splicing switch. |
PARP activity assay, NAD+/NMN metabolite measurement, macrodomain-mutant analysis, macroH2A1.1 KD/KO in differentiating myotubes, Seahorse respiration assay |
Nature structural & molecular biology |
High |
28991266
|
| 2017 |
MacroH2A1.1 cooperates with EZH2 to promote adipogenesis by directly interacting with EZH2 (requiring intact macrodomain residues G224 and G314), leading to H3K27me2/me3 accumulation on Wnt gene promoters and suppression of Wnt/β-catenin signaling. |
Co-immunoprecipitation, ChIP, macrodomain point mutant analysis, siRNA knockdown, overexpression in 3T3-L1 cells |
Journal of molecular cell biology |
Medium |
28992292
|
| 2018 |
MacroH2A1.2 physically interacts with EZH2 and elevates H3K27me3 levels at the LOX gene promoter in breast cancer cells to repress LOX expression and secretion, thereby inhibiting breast cancer-induced osteoclastogenesis. |
Co-immunoprecipitation, ChIP, gene expression analysis, osteoclastogenesis functional assay |
Cell reports |
Medium |
29972783
|
| 2018 |
MacroH2A1.2 interacts directly with HP1α and H1.2, requiring both to maintain the inactive state of the LTβ gene in prostate cancer cells, thereby inhibiting osteoclastogenesis; HP1α and H1.2 alone have intrinsic anti-osteoclastogenic activity in a macroH2A1.2-dependent manner. |
Co-immunoprecipitation, ChIP, knockdown/overexpression, osteoclastogenesis assay |
Oncogene |
Medium |
29925860
|
| 2018 |
MacroH2A1.1 suppresses EMT induction in mammary epithelial cells in an isoform-specific and stage-specific manner that depends on the ability of its macrodomain to bind PAR; macroH2A1.2 (which lacks PAR-binding) does not suppress EMT. |
Overexpression of macroH2A1.1 vs 1.2 (and PAR-binding mutant), flow cytometry for stem cell markers, morphological assays in HMLE cells |
Scientific reports |
Medium |
29339820
|
| 2019 |
EGFR-activated CDK5 phosphorylates TRIM59 at Ser308, recruiting PIN1 for cis-trans isomerization, leading to TRIM59 nuclear translocation via importin α5; nuclear TRIM59 ubiquitinates and degrades macroH2A1, leading to STAT3 signaling activation and GBM tumorigenicity. |
Co-immunoprecipitation, in vitro kinase assay, ubiquitination assay, nuclear fractionation, rescue experiments, intracranial tumor models |
Nature communications |
High |
31488827
|
| 2019 |
MacroH2A1.1 is recruited to DNA DSBs through direct association with PARylated chromatin (PARP1-dependent); macroH2A1 regulates kinetics of PAR accumulation after acute DNA damage by both suppressing PARP activity and protecting PAR from degradation, thereby preventing NAD+ depletion and necrotic cell death, and promoting efficient repair of oxidative DNA damage. |
Laser micro-irradiation, PARP inhibition, macroH2A1 KD/KO, PAR immunofluorescence/ELISA, NAD+ measurement, cell death assays |
Molecular and cellular biology |
High |
31636161
|
| 2019 |
MacroH2A1.2 is highly enriched at ALT telomeres and transiently lost during acute replication stress to facilitate DSB formation required for ALT; re-deposition occurs in a DNA damage response-dependent manner to promote HR-associated ALT; ectopic ATRX expression prevents this loss, establishing ATRX as a negative regulator of macroH2A1.2 at telomeres. |
ChIP-seq, telomere FISH, ATRX overexpression, replication stress induction, HR assay |
Nature structural & molecular biology |
High |
30833786
|
| 2020 |
MacroH2A1.2 is required for Xi integrity and female survival; it counteracts macroH2A1.1's role in promoting alternative end-joining (alt-EJ), which causes anaphase defects when macroH2A1.2 is absent; simultaneous depletion of macroH2A1.1 or alt-EJ factors rescues Xi genomic instability in macroH2A1.2-deficient cells. |
Comparative proteomics, RNAi double-knockdown, flow cytometry, FISH for anaphase bridges, mouse genetics |
Molecular cell |
High |
32649884
|
| 2021 |
MacroH2A1.1 overexpression exclusively (not macroH2A1.2) enhances nonhomologous end joining (NHEJ) DNA repair and iPSC reprogramming efficiency; macroH2A1.1 interacts exclusively with PARP1 and XRCC1 (not macroH2A1.2), identified by GFP-Trap pull-down and LC-MS/MS. |
GFP-Trap pull-down with LC-MS/MS, U2OS-GFP-NHEJ reporter assay, macroH2A1.1 KO mice, iPSC reprogramming efficiency assay |
Stem cells |
High |
35511867
|
| 2021 |
MacroH2A1.1 genome-wide localization in breast cancer cells (MDA-MB-231) shows binding to active promoters and enhancers in addition to heterochromatin; it regulates Pol II-paused genes through two mechanisms: mitigating excess transcription at genes where it occupies promoter+gene body, and stimulating Pol II pause-release at paused genes where it occupies only the TSS. |
ChIP-seq of endogenous macroH2A1.1, selective knockdown, RNA-seq, 3D genome analysis |
Journal of cell science |
Medium |
35362516
|
| 2021 |
MacroH2A1.2 deficiency impairs neural stem cell differentiation in mice, enhances neural progenitor proliferation, and reduces differentiation; NKX2.2 is identified as a direct downstream effector whose expression is reduced upon macroH2A1.2 loss; NKX2.2 overexpression rescues neuronal abnormalities, and macroH2A1.2-deficient mice display autism-like behaviors. |
Conditional mouse KO, in vitro differentiation assays, overexpression rescue, behavior tests |
EMBO reports |
Medium |
34046991
|
| 2021 |
Mutant U2AF1(S34F)-induced alternative splicing reduces H2afy1.1 (macroH2A1.1) expression, which decreases EBF1 (early B cell factor 1) transcription factor expression; macroH2A1 is enriched at the EBF1 promoter; re-expression of macroH2A1.1 rescues EBF1 expression and B cell numbers in vivo. |
Mouse genetic model (U2AF1 S34F), ChIP, RT-qPCR, induced expression rescue, in vivo B cell counting |
Cell reports |
High |
34469727
|
| 2024 |
FACT (facilitates chromatin transcription) complex destabilizes macroH2A1.2-containing nucleosomes and promotes their depletion during transcription; residue S139 in macroH2A1.2 is a critical switch modulating FACT's function; FACT-mediated macroH2A1 depletion controls macroH2A genomic distribution and stimulation-induced transcription in macrophages. |
In vitro nucleosome reconstitution, FACT activity assay, S139 mutagenesis, ChIP-seq, genome-wide macroH2A distribution analysis |
Molecular cell |
High |
39116874
|
| 2024 |
MacroH2A1.1, through its PAR-binding macrodomain, establishes a TOP1-permissive chromatin environment by facilitating PAR-dependent recruitment of XRCC1 (TOP1cc repair effector) to protect from ssDNA damage caused by transcription-induced topological stress; macroH2A1.2 (lacking PAR-binding) cannot provide this protection. |
Single-cell visualization of TOP1ccs, XRCC1 recruitment assay, macroH2A1.1 inactivation, pharmacogenomic screen in breast cancer cells |
bioRxivpreprint |
Medium |
|
| 2024 |
MacroH2A1 overexpression is toxic in yeast (failing to complement replication-coupled H2A), and both its histone fold domain and macro domain independently override native nucleosome positioning; macroH2A1 expression leads to lower nucleosome occupancy, decreased short-range chromatin interactions, disrupted centromeric clustering, and increased chromosome instability. |
Histone replacement in yeast, domain uncoupling constructs, nChIP-seq, Hi-C, chromosome instability assay |
Cell reports |
Medium |
38990716
|
| 2024 |
MacroH2A1 (mH2A1) regulates replication origin firing on the inactive X chromosome by interacting with the replicative MCM helicase complex (mapped to a phenylalanine in macroH2A1 interacting with the C-terminus of Mcm3), enhancing pre-replication complex licensing during G1; macroH2A1-containing nucleosomes slow replication progression rate on the Xi. |
KD/KO of macroH2A1 isoforms, replication fork imaging, nChIP-seq, Co-IP with MCM helicase, domain mapping |
Nucleic acids research |
Medium |
39189450
|
| 2024 |
Nuclear PD-L1, phosphorylated by AMPKα, cooperates with AMPKα to directly phosphorylate macroH2A1 at Ser146, epigenetically activating senescence-associated, JAK/STAT, and Hippo signaling pathway genes. |
Nuclear PD-L1 enforced expression, AMPKα inhibition/activation, phosphorylation assay, gene expression analysis |
The Journal of clinical investigation |
Medium |
39545415
|
| 2024 |
Upon oxidative DNA damage, macroH2A1 (mH2A) is ubiquitinated, causing release and activation of PARP-1 from the mH2A1 nucleosome complex; in the undamaged state, mH2A nucleosome-associated PARP-1 is inactive; in vivo-induced ubiquitination of mH2A without DNA damage is sufficient to release PARP-1; this pathway is specific to oxidative damage (not alkylation or doxorubicin). |
In vivo ubiquitination induction, PARP-1 activity assay, Co-IP of PARP-1 with mH2A nucleosomes, cell survival assay, damage-type comparison |
BMC biology |
Medium |
39218869
|
| 2025 |
Loss of macroH2A1.1 (but not macroH2A1.2 or macroH2A2) in mice causes kidney histopathological changes associated with systemic shifts in nutrient metabolization: reduced lipid oxidation, increased glycolysis, and altered NAD+ metabolism; a ketogenic diet overrides these metabolic phenotypes and prevents kidney abnormalities, indicating macroH2A1.1's metabolite-binding macrodomain links chromatin composition to systemic energy metabolism. |
Isoform-specific KO mice, metabolomics, RNA-seq, histopathology, glucose tolerance test, dietary intervention |
Science advances |
High |
41134882
|