| 2003 |
HEXIM1 (MAQ1) inhibits P-TEFb (CDK9/cyclin T) kinase activity in a process that specifically requires 7SK snRNA to mediate the HEXIM1:P-TEFb interaction; 7SK binding alone is insufficient to inhibit P-TEFb, and P-TEFb dissociates from HEXIM1 and 7SK during stress response. |
In vivo and in vitro transcription assays, immunoprecipitation, mass spectrometry identification of complex components |
Molecular cell |
High |
12832472 14580347
|
| 2004 |
HEXIM1 binds 7SK snRNA directly through a central arginine-rich RNA-binding motif (amino acids 152-155), and the HEXIM1 C-terminal domain (aa 181-359) directly binds P-TEFb; a conserved motif (aa 202-205) is required for P-TEFb binding and inhibition but not for 7SK recognition, establishing a sequential assembly model. |
In vitro reconstitution of 7SK-dependent HEXIM1-P-TEFb complex with purified proteins, yeast three-hybrid tests, gel-shift assays, GST pull-down, yeast two-hybrid, point mutagenesis |
The EMBO journal |
High |
15201869
|
| 2004 |
The first 18 amino acids within the NLS of HEXIM1 constitute an arginine-rich motif (resembling HIV-1 Tat TAR-binding domain) that is necessary and sufficient for 7SK binding in vivo and in vitro; this motif is essential for HEXIM1's inhibitory action on P-TEFb and RNA Pol II transcription. |
In vivo and in vitro 7SK binding assays, HEXIM1 deletion/substitution mutants, immunoprecipitation, in vitro kinase assays |
Molecular and cellular biology |
High |
15169877
|
| 2005 |
The large inactive P-TEFb complex contains one 7SK molecule, a HEXIM1 dimer (mediated by a C-terminal coiled-coil region), and two P-TEFb molecules; CDK9 phosphorylated at Thr186 is required for P-TEFb recruitment to the 7SK/HEXIM complex; conserved residues Tyr271 and Phe208 in HEXIM1 are required for P-TEFb inhibition but not complex formation. |
Mutational analysis, glycerol gradient sedimentation, in vitro kinase assays, stoichiometry analysis |
The Journal of biological chemistry |
High |
15965233
|
| 2005 |
HEXIM1 contains a stable C-terminal cyclin T-binding domain (TBD, residues 255-359) that forms a coiled-coil homodimer and directly binds the cyclin boxes of cyclin T1; HIV-1 Tat competes with HEXIM1 for cyclin T1 binding, displacing HEXIM1 from the P-TEFb complex. |
GST pull-down, analytical gel filtration, isothermal titration calorimetry, fluorescence spectroscopy, size exclusion chromatography, HeLa cell functional assays |
The Journal of biological chemistry |
High |
15855166
|
| 2005 |
HEXIM1's basic region contains two monopartite and two bipartite nuclear localization sequences; the arginine-rich motif within the basic region is essential for 7SK snRNA binding, P-TEFb binding, and transcription inhibition; the basic region interacts with adjacent acidic regions in the absence of RNA, and removal of negative charges causes HEXIM1 sequestration into the large complex and nuclear speckle localization. |
NLS-deletion mutagenesis, immunofluorescence, subnuclear localization studies, in vivo transcription assays |
The EMBO journal |
High |
16362050
|
| 2005 |
HEXIM1 forms oligomers (most likely dimers) mediated by its C-terminal coiled-coil region and by 7SK snRNA binding to the central basic region; mutations in the N-terminal part of the coiled-coil abrogate P-TEFb binding and inhibition; oligomerization via both the coiled-coil and basic regions is critical for inhibition of transcriptional elongation. |
Alanine mutagenesis of conserved leucines, RNase A digestion, co-immunoprecipitation, in vivo transcription assays |
Nucleic acids research |
High |
16377779
|
| 2005 |
HEXIM1 and HEXIM2 can form stable homo- and hetero-oligomers (most likely dimers); HEXIM2 compensates functionally for HEXIM1 loss to maintain constant levels of 7SK/HEXIM-bound P-TEFb, demonstrating a tightly regulated cellular mechanism balancing active and inactive P-TEFb. |
Immunoprecipitation, glycerol gradient sedimentation, HEXIM1 knockdown/HEXIM2 compensation assays, in vivo transcription assays |
The Journal of biological chemistry |
High |
15713661 15713662
|
| 2006 |
Two structurally distinct RNA elements in 7SK—the distal segment of the 5' hairpin (G24-C48/G60-C87) and the apical region of the 3' hairpin (G302-C324)—independently recruit HEXIM1 and P-TEFb respectively; HEXIM1 binding to the 5' hairpin is a prerequisite for P-TEFb association with the 3' hairpin. |
In vivo RNA-protein binding assays, mutagenesis of 7SK elements, HeLa cell transcription assays, minimal regulatory RNA reconstitution |
Molecular and cellular biology |
High |
16382153
|
| 2007 |
HEXIM1 directly contacts CDK9 at its activation segment (near the catalytic cleft); the conserved PYNT sequence (aa 202-205) of HEXIM1, specifically F208, cross-links to a Cdk9 peptide within the activation segment controlling access to the catalytic cleft, suggesting HEXIM1 inhibits P-TEFb by interfering with substrate binding to CDK9. |
Photo-cross-linking with photoreactive amino acids in live cells, cell extracts, and in vitro reconstituted complexes; mass spectrometry identification of cross-linked peptides |
Proceedings of the National Academy of Sciences of the United States of America |
High |
27791144
|
| 2007 |
The solution structure of the HEXIM1 cyclin T-binding domain (TBD) reveals a parallel coiled-coil homodimer with a preceding alpha helix folding back onto the first coiled-coil unit; NMR titration, fluorescence, and immunoprecipitation identify the binding interface covering the first coiled-coil segment, with electrostatic interactions between an acidic patch on HEXIM1 and positive residues of cyclin T1 driving complex formation. |
NMR solution structure determination, NMR titration, fluorescence spectroscopy, immunoprecipitation, mutagenesis with transcription regulation assays in cells |
Proceedings of the National Academy of Sciences of the United States of America |
High |
17724342
|
| 2007 |
HIV-1 Tat prevents formation of and releases P-TEFb from the 7SK snRNP by directly displacing HEXIM1 from cyclin T1 through high-affinity Tat-cyclin T1 interaction; in vitro, Tat competes with HEXIM1 for 7SK binding and can release P-TEFb from preformed P-TEFb-HEXIM1-7SK complex; primary blood lymphocytes show reduced 7SK snRNP upon HIV-1 infection. |
In vitro competition assays with purified proteins, immunoprecipitation in vivo, glycerol gradient sedimentation, primary cell analysis |
Nucleic acids research |
High |
17341462 17576689
|
| 2007 |
HMBA activates PI3K/Akt, leading to phosphorylation of HEXIM1, which causes release of active P-TEFb from the HEXIM1/7SK snRNP complex; a phosphorylation-resistant HEXIM1 mutant blocks HMBA-induced P-TEFb release and HIV transcription activation. |
PI3K/Akt pathway inhibitors, phosphorylation assays, glycerol gradient sedimentation, chromatin immunoprecipitation, HEXIM1 phosphorylation mutants |
PLoS pathogens |
High |
17937499
|
| 2008 |
LARP7 is a stable component of the 7SK snRNP while HEXIM1 and P-TEFb are reversibly associated; immunodepletion of LARP7 depletes most 7SK RNA regardless of HEXIM1 or P-TEFb presence; LARP7 knockdown decreases steady-state 7SK levels and increases free P-TEFb. |
Glycerol gradient sedimentation, immunodepletion, siRNA knockdown, Tat transactivation assays |
Nucleic acids research |
High |
18281698
|
| 2008 |
Nucleophosmin (NPM) binds HEXIM1 in vitro and in vivo and acts as a negative regulator of HEXIM1; NPM overexpression causes proteasome-mediated degradation of HEXIM1 leading to P-TEFb activation; cytoplasmic NPMc+ mutant (found in AML) sequesters HEXIM1 in the cytoplasm, increasing RNA Pol II transcription. |
Co-immunoprecipitation, GST pull-down, siRNA knockdown, overexpression, subcellular fractionation, immunofluorescence, proteasome inhibitor experiments |
Journal of molecular biology |
High |
18371977
|
| 2007 |
hnRNPs A1, A2, Q, and R associate with 7SK RNA; their association increases when P-TEFb-HEXIM1-7SK is dissociated following transcription inhibition or HEXIM1 knockdown; knockdown of hnRNPs A1/A2 attenuates transcription-dependent dissociation of P-TEFb-HEXIM1-7SK complexes, implicating hnRNP-7SK interactions in P-TEFb activation. |
Mass spectrometry identification, immunoprecipitation, siRNA knockdown, glycerol gradient sedimentation |
Molecular and cellular biology |
High |
17709395
|
| 2010 |
Release of P-TEFb from the 7SK snRNP by HIV-1 Tat or cellular activator Brd4 is accompanied by a major conformational change in 7SK RNA that blocks re-association of HEXIM1, suggesting that reincorporation of HEXIM1 into the 7SK snRNP is the regulated step of reassembly. |
In vitro P-TEFb release assay using immunoprecipitated 7SK snRNP (anti-LARP7), glycerol gradient sedimentation, RNA chemical modification (SHAPE/dimethyl sulfate probing) |
PloS one |
High |
20808803
|
| 2010 |
HEXIM1 binds double-stranded RNA in a sequence-independent manner; upon dsRNA binding, a large conformational change occurs in HEXIM1 that allows recruitment and inhibition of P-TEFb; a significant fraction of HEXIM1 is cytoplasmic and both nuclear and cytoplasmic HEXIM1 is RNA-associated; HEXIM1 co-precipitates with miR-16 but not U6 or U2 snRNAs. |
In vitro RNA competition assays, subcellular fractionation, immunofluorescence, immunoprecipitation with RT-PCR |
Nucleic acids research |
Medium |
17395637
|
| 2010 |
NMR and biochemical analysis show that a repeated GAUC motif in the upper part of the 5' hairpin of 7SK is essential for specific HEXIM1 recognition; binding of the HEXIM1 arginine-rich motif (ARM) peptide induces opening of the GAUC motif and stabilization of an internal loop; a conserved proline-serine sequence in the ARM is essential for binding specificity and RNA conformational change. |
NMR spectroscopy, gel-shift assays, mutagenesis of 7SK and HEXIM1 ARM peptide |
Nucleic acids research |
High |
20675720
|
| 2009 |
Photo-cross-linking identifies U30 of 7SK RNA as contacting HEXIM1 amino acids 210-220 in both a minimal RNA-binding site and a fully reconstituted 7SK/HEXIM1/P-TEFb complex; a minimal 7SK hairpin (nucleotides 24-87) can bind specifically to HEXIM1 in vivo. |
4-thioU photo-cross-linking, mass spectrometry, in vivo HEXIM1 binding assays |
Journal of molecular biology |
High |
19244621
|
| 2009 |
Cyclin T1 preferentially binds HEXIM1 and cyclin T2 preferentially binds HEXIM2 (higher affinities measured by ITC); importin alpha binds HEXIM1 and HEXIM2 to support nuclear import of cyclin T; the 7SK snRNA 5' hairpin (nucleotides 23-88) binds Cyclin T1-HEXIM1 with Kd <0.3 µM. |
Isothermal titration calorimetry, electrophoretic mobility shift assays, radioactively labelled 7SK snRNA |
Journal of molecular biology |
High |
19883659
|
| 2012 |
PKC phosphorylates HEXIM1 at serine 158 (S158); phosphorylated HEXIM1 neither binds 7SK snRNA nor inhibits P-TEFb; phorbol esters, T cell antigen receptor engagement, and constitutively active PKCθ all inhibit 7SK snRNP formation and increase P-TEFb-dependent transcription through this mechanism; phosphorylation-resistant HEXIM1 (S158A) blocks these effects. |
In vitro phosphorylation assay, phosphorylation-resistant mutants, immunoprecipitation, T cell activation assays, glycerol gradient sedimentation |
Nucleic acids research |
High |
22821562
|
| 2005 |
HEXIM1 forms a distinct complex with glucocorticoid receptor (GR) independently of 7SK RNA, CDK9, or cyclin T1; the arginine-rich NLS of HEXIM1 directly associates with the ligand-binding domain of GR; HEXIM1 overexpression decreases ligand-dependent association between GR and the coactivator TIF2; disruption of 7SK blunted HEXIM1's negative effect on AhR-dependent but not GR-mediated transcription. |
Co-immunoprecipitation, adenovirus-mediated overexpression, siRNA knockdown, immunofluorescence, domain mapping |
Proceedings of the National Academy of Sciences of the United States of America |
High |
15941832
|
| 2008 |
HEXIM1 inhibits estrogen receptor alpha (ERα)-mediated transcription by bridging an ERα-P-TEFb interaction; increased HEXIM1 expression in MCF-7 cells and MMTV/HEXIM1 mice decreased estrogen-driven cyclin D1 expression and reduced ERα, P-TEFb, and S2P RNAPII recruitment to ERα-responsive gene promoters; HEXIM1 specifically decreased estrogen-induced P-TEFb activity. |
ChIP assays, MMTV/HEXIM1 transgenic mouse model, siRNA knockdown, mammary gland functional assays, in vitro kinase assays |
Cancer research |
High |
18757415
|
| 2017 |
HEXIM1 forms a ribonuclear complex (HDP-RNP) with the lncRNA NEAT1, DNA-PK subunits (DNAPKc, Ku70, Ku80), and paraspeckle proteins (SFPQ, NONO, PSPC1, RBM14, MATRIN3); HEXIM1 binding to NEAT1 is required for HDP-RNP assembly; the HDP-RNP is required for innate immune response to foreign DNA via the cGAS-STING-IRF3 pathway; foreign DNA remodels HDP-RNP to release paraspeckle proteins and recruit STING, activating DNAPKc and IRF3. |
Immunoprecipitation, mass spectrometry, RNA sequencing, siRNA knockdown, cGAS-STING pathway activation assays |
Molecular cell |
High |
28712728
|
| 2015 |
PPM1G phosphatase directly binds 7SK RNA and HEXIM1 after P-TEFb has been released from the 7SK snRNP; this dual binding blocks P-TEFb reassembly onto the snRNP to sustain NF-κB-mediated transcription elongation; ATM kinase regulates PPM1G-7SK snRNP interaction through site-specific PPM1G phosphorylation. |
ChIP assays, in vitro binding assays (direct PPM1G-7SK and PPM1G-HEXIM1 binding), siRNA knockdown, ATM inhibition experiments |
Molecular and cellular biology |
High |
26324325
|
| 2016 |
Under nucleotide stress, HEXIM1 is induced to form an inhibitory complex with P-TEFb to inhibit elongation at tumorigenic genes in melanoma; HEXIM1 overexpression suppresses melanoma formation in zebrafish while HEXIM1 inactivation accelerates tumor onset; anti-tumorigenic RNAs bind to and are stabilized by HEXIM1 under nucleotide stress. |
Zebrafish melanoma model (gain- and loss-of-function), human melanoma cell knockdown, RNA immunoprecipitation, gene expression analysis |
Molecular cell |
High |
27058786
|
| 2014 |
Release of P-TEFb from the 7SK snRNP leads to increased transcription specifically from a proximal (unannotated) HEXIM1 promoter, not the distal promoter; this involves poised RNA Pol II, and the superelongation complex subunits AFF4 and ELL2 are recruited to this proximal promoter after P-TEFb release and are required for its transcriptional effects, creating an autoregulatory feedback loop. |
ChIP-seq, luciferase reporter assays, P-TEFb-releasing compound treatments, siRNA knockdown of AFF4/ELL2 |
The Journal of biological chemistry |
High |
24515107
|
| 2004 |
CLP-1 (mouse HEXIM1 ortholog) gene knockout causes prenatal lethality with left ventricular hypertrophy and downregulation of HAND1; CLP-1 null fetal hearts show altered nuclear and myofibril morphologies and re-expression of hypertrophic contractile genes. |
Gene knockout in mice, electron microscopy, Northern blot, cardiac phenotype analysis |
Mechanisms of development |
High |
15172687
|
| 2007 |
Insertional mutation disrupting the HEXIM1 C-terminal region causes prenatal lethality with defects in coronary patterning, thin ventricular walls, decreased myocardial vascularization, increased apoptosis, decreased VEGF expression (a direct transcriptional target of HEXIM1), and decreased FGF9; HEXIM1 attenuates repressive effects of C/EBPα on VEGF gene transcription. |
Insertional gene mutation in mice, PECAM-1 staining, immunohistochemistry, qRT-PCR, ChIP |
Circulation research |
High |
18079413
|
| 2007 |
CLP-1 (HEXIM1) dissociates from P-TEFb complex under hypertrophic stimuli (mechanical stretch, endothelin-1, phenylephrine) in cardiomyocytes; this dissociation is blocked by JAK2 inhibitor AG490, placing JAK/STAT signaling upstream of CLP-1 release from P-TEFb during cardiac hypertrophy. |
Immunoprecipitation in primary cardiomyocytes, mechanical stretch assay, JAK2 inhibitor (AG490), immunofluorescence co-localization |
Cardiovascular research |
High |
17459355
|
| 2012 |
HEXIM1 acts as a positive regulator of p53 by interacting with p53 (C-terminal regions of both proteins required) and preventing HDM2-mediated ubiquitination of p53, thereby enhancing p53 protein stability and upregulating p53 target genes (Puma, p21); HEXIM1 knockdown inhibits p53 induction and prevents cell cycle arrest caused by p53. |
Co-immunoprecipitation, ubiquitination assay, siRNA knockdown, overexpression, cell cycle analysis, target gene expression |
The Journal of biological chemistry |
High |
22948151
|
| 2018 |
BET inhibition (BRD4 inhibition) releases P-TEFb from its inhibitor HEXIM1, causing a rapid overall increase in RNA synthesis that promotes transcription-replication conflicts; HEXIM1 and RAD51 both promote BET inhibitor-induced fork slowing but prevent a DNA damage response at these conflicts. |
siRNA knockdown of HEXIM1, DNA fiber assays for fork speed, γH2AX assays for DNA damage, RAD51 foci analysis |
Cell reports |
High |
30463005
|
| 2019 |
The histone demethylase KDM5B directly represses HEXIM1 expression by occupying the HEXIM1 promoter (H3K4me3/2 demethylation); RNAi knockdown of KDM5B or KDM5B inhibitors induce HEXIM1 expression, inhibit cancer cell proliferation, induce differentiation, and inhibit breast tumor metastasis. |
Chemical proteomics, biotin-NeutrAvidin pull-down, surface plasmon resonance, ChIP assays, shRNA knockdown, mouse metastasis model |
Breast cancer research |
High |
31805991
|
| 2016 |
Hexim1 F208 (within the conserved PYNT/202PYNTTQFLM210 sequence) directly contacts the CDK9 activation segment controlling access to the catalytic cleft; reciprocally, Cdk9 W193 cross-links to Hexim1; this contact is proposed to block substrate binding to CDK9, explaining the mechanism of kinase inhibition. |
Site-specific incorporation of photoreactive amino acids, photo-cross-linking in live cells and in vitro, mass spectrometry |
Proceedings of the National Academy of Sciences of the United States of America |
High |
27791144
|