| 2000 |
Crystal structure of the 4.1R N-terminal 30 kDa domain (FERM domain core) reveals a cloverleaf-like architecture with three lobes, each containing a specific binding site for band 3, glycophorin C/D, or p55. Two separate calmodulin (CaM) binding regions are located at the central region: one Ca2+-insensitive alpha-helical site and one Ca2+-sensitive extended-structure site whose binding to CaM weakens 4.1R interactions with target proteins. |
X-ray crystallography with functional binding assays |
Nature structural biology |
High |
11017195
|
| 2000 |
Within the 30 kDa domain, sequences encoded by exon 8 constitute the binding interface for glycophorin C (GPC), and sequences encoded by exon 10 constitute the binding interface for p55. 4.1R increases the affinity of p55 binding to GPC by an order of magnitude, and Ca2+/calmodulin binding to 4.1R decreases its affinity for both p55 and GPC in a Ca2+-dependent manner. |
In vitro binding assays with recombinant domain fragments and calmodulin competition assays |
The Journal of biological chemistry |
High |
10831591
|
| 2000 |
4.1R forms a ternary complex with spectrin and F-actin at the erythrocyte junctional node; both the intact N-terminus and CH1 domain of the spectrin beta chain bind F-actin and 4.1R. PIP2 greatly enhances the binding of 4.1R to the spectrin beta chain N-terminal region (residues 1-301), suggesting a regulatory switch. |
In vitro binding/co-sedimentation assays with recombinant domain truncations and liposome PIP2 competition |
Biochemistry |
High |
16060676
|
| 2006 |
4.1R binds PIP2-containing liposomes through its N-terminal 30 kDa membrane-binding domain; PIP2 binding induces a conformational change. Amino acids K63,64 and K265,266 are required for PIP2 binding. PIP2 selectively enhances 4.1R binding to GPC but inhibits binding to band 3, with no effect on p55 binding. |
Liposome binding assays, alanine mutagenesis, in vitro pull-down with recombinant proteins |
Biochemistry |
High |
16669616
|
| 2008 |
Deletion of 4.1R in mouse red cells causes large reduction of actin and loss of cytoskeletal lattice structure. Pull-down assays showed 4.1R associates with XK, Duffy, and Rh transmembrane proteins, in addition to glycophorin C; absence of 4.1R causes selective reduction of these proteins from the membrane, consistent with 4.1R organizing a macromolecular junctional complex. |
4.1R knockout mouse analysis, in vitro pull-down assays, Western blot, flow cytometry |
Proceedings of the National Academy of Sciences of the United States of America |
High |
18524950
|
| 1999 |
A 135 kDa nonerythroid 4.1R isoform specifically interacts with the nuclear mitotic apparatus (NuMA) protein. The minimal interaction sequences map to residues encoded by exons 20 and 21 of 4.1R and residues 1788-1810 of NuMA. 4.1R and NuMA co-localize in the interphase nucleus and redistribute to spindle poles in mitosis; 4.1R forms a complex with NuMA, dynein, and dynactin during cell division. |
Yeast two-hybrid, in vitro binding assays, co-immunoprecipitation, co-immunolocalization |
The Journal of cell biology |
High |
10189366
|
| 2000 |
Two 4.1R isoforms (135 kDa and 150 kDa) interact specifically with the tight junction protein ZO-2. 4.1R co-localizes with ZO-2 and occludin at MDCK tight junctions and co-precipitates with ZO-2, ZO-1, and occludin. The interaction maps to exons 19-21 of 4.1R and residues 1054-1118 of ZO-2. This interaction is specific to confluent (tight junction-forming) cells. |
Yeast two-hybrid, immunocolocalization, co-immunoprecipitation, in vitro binding studies |
The Journal of biological chemistry |
High |
10874042
|
| 1999 |
Nuclear import of the 4.1R80 isoform requires two distant signals: a basic KKKRER peptide encoded by alternative exon 16 (acting as a weak core NLS) and an acidic EED peptide encoded by alternative exon 5. Both motifs are needed for full importin-mediated nuclear import. 4.1R80 binds importin alpha2 (Rch1) with high affinity (KD = 30 nM), and affinity decreases at least 7–20 fold if either motif is absent. |
Transfection with epitope-tagged constructs, digitonin-permeabilized cell import assays, resonant mirror protein-protein interaction measurements with recombinant Rch1 |
Molecular biology of the cell |
High |
10359596
|
| 1999 |
4.1R-null mice generated by gene knockout exhibit moderate hemolytic anemia, abnormal erythrocyte morphology, decreased membrane stability, and reduced expression of spectrin and ankyrin, demonstrating that 4.1R is required for erythroid membrane skeleton assembly. |
Gene knockout (homologous recombination), morphological and biochemical analysis of erythrocytes |
The Journal of clinical investigation |
High |
9927493
|
| 2011 |
Protein kinase C activation in intact erythrocytes phosphorylates 4.1R at serine 312 and serine 331. Phosphorylation at either site suppresses 4.1R binding to the cytoplasmic domains of GPC, Duffy, and XK, rendering these transmembrane proteins more easily detergent-extractable. Phosphorylation also weakens 4.1R affinity for beta-spectrin, destabilizing the ternary spectrin-actin-4.1R junctional complex. |
PKC activation in intact cells, in vitro phosphorylation assays, in vitro protein binding assays with phosphomimetic mutants |
Biochemistry |
High |
21542582
|
| 2001 |
4.1R binds to phosphatidylserine (PS) through a two-step process: initial interaction via positively charged YKRS residues with the serine head group, followed by tight hydrophobic interaction with fatty acid acyl chains. Association with acyl chains impairs 4.1R binding to calmodulin, band 3, and glycophorin C. 4.1R-PS interaction may regulate intracellular sorting of 4.1R. |
In vitro liposome binding assays, phospholipase treatments, ionic strength competition, biochemical analyses |
The Journal of biological chemistry |
High |
11423550
|
| 2004 |
Nonerythroid 135 kDa 4.1R isoforms directly interact with microtubules; both the membrane-binding domain and C-terminal domain mediate tubulin association. 4.1R co-localizes with microtubules in mitotic stages. Immunodepletion of 4.1R from cell-free mitotic extract results in randomly dispersed microtubules instead of organized asters; adding back recombinant 135 kDa 4.1R reconstitutes mitotic asters. |
In vitro microtubule sedimentation assays, GST pull-downs, immunodepletion from mitotic cell-free extract, reconstitution assays |
The Journal of biological chemistry |
High |
15184364
|
| 2004 |
4.1R is phosphorylated by p34cdc2 kinase at Thr60 and Ser679 in a mitosis-specific manner. Phosphorylation is essential for targeting 4.1R to spindle poles and for mitotic microtubule aster assembly in vitro. Phosphorylation enhances 4.1R association with NuMA and tubulin. siRNA depletion of 4.1R from HeLa cells impairs efficient mitotic spindle pole focusing. |
In vitro cdc2 kinase assay, phosphorylation site mapping, siRNA knockdown, mitotic aster reconstitution in vitro |
Molecular biology of the cell |
High |
15525677
|
| 2008 |
4.1R localizes at centrosomes, specifically at distal/subdistal regions of mature centrioles, in a cell cycle-dependent manner. RNAi depletion of 4.1R perturbs subdistal appendage proteins ninein and outer dense fiber 2/cenexin, reduces interphase microtubule anchoring, causes G1 accumulation in p53-proficient cells, reduces centrosome separation leading to monopolar spindle formation, and causes mislocalization of NuMA. |
RNAi knockdown, immunofluorescence/confocal microscopy, cell cycle analysis |
Molecular and cellular biology |
High |
18212055
|
| 2009 |
4.1R expressed in gastric epithelial cells directly associates with adherens junction protein beta-catenin. In 4.1R-deficient stomach epithelia, beta-catenin is selectively reduced, E-cadherin linkage to the cytoskeleton is weakened, actin organization is altered, and cell-cell contacts and gastric gland organization are disrupted. |
4.1R-null mouse analysis, biochemical co-immunoprecipitation/pull-down, histological examination |
Biochimica et biophysica acta |
High |
19376086
|
| 2009 |
4.1R is recruited to the immunological synapse after TCR stimulation. In 4.1R-deficient CD4+ T cells, LAT phosphorylation and downstream ERK phosphorylation are enhanced, leading to hyperproliferation and increased IL-2/IFNγ production. 4.1R directly binds LAT and thereby inhibits its phosphorylation by ZAP-70. |
4.1R-/- mouse model, co-immunoprecipitation, phosphorylation assays, cytokine production measurements |
Blood |
High |
19190245
|
| 2011 |
4.1R co-immunoprecipitates with nuclear envelope proteins emerin and lamin A/C. RNAi depletion of 4.1R causes nuclear dysmorphology, partial redistribution of emerin to cytoplasm, disorganization of lamin A/C, mislocalization of multiple nuclear subcompartment proteins (MAN1, Tpr, Nup62, NuMA, LAP2α), increased nucleus-centrosome distances, increased β-catenin signaling, and nuclear accumulation of β-catenin. |
Co-immunoprecipitation, RNAi knockdown, immunofluorescence microscopy in human cells and MEFs |
Journal of cell science |
High |
21486941
|
| 2011 |
4.1R expression in keratinocytes is required for cell adhesion, spreading, migration, motility, and epidermal wound healing. In 4.1R-/- keratinocytes, surface expression and activity of β1 integrin are reduced, and actin stress fibers and focal adhesions fail to form on fibronectin. |
4.1R-/- mouse model, cell adhesion/migration/spreading assays, flow cytometry for β1 integrin surface expression, wound healing assay |
Journal of cell science |
High |
21693581
|
| 2011 |
4.1R regulates cell migration by localizing to the leading edge; its membrane-binding domain is required for this plasma membrane localization. Co-immunoprecipitation and pull-down identified IQGAP1 as a direct binding partner of 4.1R (via the membrane-binding domain). 4.1R silencing abolishes localization of IQGAP1 to the leading edge, while IQGAP1 is not required for 4.1R localization. |
siRNA knockdown, co-immunoprecipitation, pull-down assays, live-cell migration assays, immunofluorescence |
Journal of cell science |
High |
21750196
|
| 2013 |
4.1R directly associates with PMCA1b (plasma membrane calcium ATPase 1b) in enterocytes; the interaction involves the membrane-binding domain of 4.1R and the second intracellular loop and C-terminus of PMCA1b. 4.1R-/- mice show impaired intestinal calcium absorption, reduced PMCA1b expression in enterocytes, and secondary hyperparathyroidism. |
4.1R-/- mouse model, co-immunoprecipitation, in vitro direct binding assays with recombinant domains, calcium absorption measurements |
The Journal of biological chemistry |
High |
23460639
|
| 2013 |
4.1R interacts and co-localizes with cortical CLASP2 and is required for the correct number and dynamics of CLASP2 cortical platforms. 4.1R controls CLASP2 binding to microtubules at the cell edge by locally altering GSK3 activity. In 4.1R-knockdown cells, microtubule plus-ends are not tethered to the cell cortex and lose radial distribution. |
Co-immunoprecipitation, pull-down assays, siRNA knockdown, live microtubule dynamics imaging, immunofluorescence |
Journal of cell science |
High |
23943871
|
| 2012 |
4.1R binds directly to the cytoplasmic domain of NHE1 (Na+/H+ exchanger isoform 1) through an EED motif in the 4.1R FERM domain interacting with two clusters of basic residues (K519R and R556FNKKYVKK) in NHE1. Binding affinity (KD = 100-200 nM) is reduced under hypertonic/acidic conditions and upon Ca2+/CaM binding to the 4.1R FERM domain, suggesting electrostatic regulation. |
In vitro direct binding assays with recombinant proteins, resonant mirror detection, affinity measurements |
The Biochemical journal |
High |
22731252
|
| 2000 |
4.1R C-terminal domain (22/24 kDa) directly interacts with eIF3-p44, a subunit of the eukaryotic translation initiation factor 3 complex. Depletion of eIF3-p44 from rabbit reticulocyte lysates abolishes efficient cell-free protein translation, suggesting 4.1R may anchor the translation apparatus to the cytoskeleton. |
Yeast two-hybrid, in vitro binding assays, co-immunoprecipitation, cell-free translation depletion |
Blood |
Medium |
10887144
|
| 2004 |
A constitutive domain of 4.1R containing heptad repeats of leucine residues is responsible for association with tubulin; this domain is present in all 4.1R isoforms. In T cells, 4.1R associates with interphase microtubules, and ectopic 4.1R expression causes microtubule disorganization. |
GST pull-down with tubulin, co-sedimentation with taxol-polymerized microtubules, confocal microscopy, transfection assays |
The Journal of biological chemistry |
Medium |
11579097
|
| 2004 |
4.1R isoforms are present in isolated centrosome preparations and remain at the center of in vitro-assembled microtubule asters. Addition of 4.1R-GST fusion protein increases the number of microtubule asters assembled from isolated centrosomes. Specific 4.1R isoforms that perturb centrosomal distribution of p150Glued and dynein intermediate chain disorganize interphase microtubules after regrowth. |
Centrosome isolation, in vitro microtubule aster assembly assays, confocal microscopy, transfection |
Journal of cell science |
Medium |
15564380
|
| 2000 |
A constitutive core region of 4.1R (encoded by constitutive exons, common to all isoforms) can localize to the nucleus and confer nuclear targeting to a cytosolic reporter. Sequences encoded by exon 5 act as a dominant cytoplasmic retention signal (nuclear export signal). When both exon 5 and exon 16 are present, nuclear targeting by exon 16 dominates over exon 5 cytoplasmic retention. |
Transfection of epitope-tagged natural and engineered 4.1R isoforms in COS-7 cells, immunofluorescence, reporter fusion experiments |
Journal of cell science |
Medium |
10852827
|
| 2002 |
The exon 5-encoded leucine-rich sequence in 4.1R functions as a nuclear export signal (NES): it binds to export receptor CRM1 in a RanGTP-dependent manner, and two conserved hydrophobic residues are critical for NES function and cytoplasmic localization of 4.1R isoforms containing this sequence. |
CRM1 binding assays, RanGTP-dependent interaction tests, site-directed mutagenesis, immunofluorescence of exon 5 mutants |
The Journal of biological chemistry |
Medium |
12427749
|
| 1999 |
The N-terminal 209 amino acid domain (headpiece, HP) encoded from AUG-1 of high molecular weight 4.1R isoforms abrogates nuclear targeting: ATG-1-translated isoforms localize to plasma membrane and endoplasmic reticulum rather than nucleus, and fusing the 209 aa domain to a nuclear 4.1R isoform inhibits its nuclear entry. |
RT-PCR cloning of ATG-1 isoforms, transient transfection with c-Myc-tagged constructs, immunofluorescence, subcellular fractionation |
Proceedings of the National Academy of Sciences of the United States of America |
Medium |
10611314
|
| 2000 |
Nonerythroid 4.1R isoforms (~105/110 kDa) in skeletal muscle co-purify in a supramolecular complex with sarcomeric proteins myosin, alpha-actin, and alpha-tropomyosin. In vitro binding assays show 4.1R may interact directly with these contractile proteins through its 10 kDa domain. 4.1R protein decorates A-bands in skeletal muscle. |
Native complex co-purification, in vitro binding assays with recombinant 10 kDa domain, immunofluorescence/immunohistochemistry |
Molecular biology of the cell |
Medium |
11071908
|
| 2008 |
4.1R deficiency in mice leads to prolonged Q-T interval and action potential duration, larger/slower Ca2+ transients, increased sarcoplasmic reticulum Ca2+ content, reduced Na+/Ca2+ exchanger current density, faster transient inward current inactivation, and increased persistent Na+ current density. 4.1R KO hearts show reduced NaV1.5α expression, indicating 4.1R modulates cardiac ion transporter function. |
4.1R-/- mouse ECG, patch-clamp electrophysiology, Ca2+ transient measurements in isolated myocytes |
Circulation research |
Medium |
18787192
|
| 2006 |
4.1R deficiency in mice leads to erythrocyte dehydration with reduced K+ and increased Na+ content; Na/H exchange activity is markedly upregulated with increased Vmax, abnormal osmotic dependence, and loss of okadaic acid-induced Na/H exchange activation. This demonstrates that 4.1R physiologically downregulates Na/H exchange activity. |
4.1R-/- mouse model, ion transport assays (Na/H exchange, Na-K pump, NKCC cotransport), pharmacological analyses |
American journal of physiology. Cell physiology |
Medium |
16774987
|
| 2006 |
Fox-2 (RBFOX2) binds to conserved UGCAUG elements in the proximal intron downstream of exon 16 of 4.1R pre-mRNA and activates exon 16 inclusion. Knockdown of Fox-2 by siRNA decreases exon 16 splicing. Fox-2 is expressed in mouse erythroblasts and is a physiological activator of the erythroid differentiation-specific exon 16 splicing switch. |
SELEX, in vitro RNA binding, HeLa co-transfection minigene assays, siRNA knockdown, immunoblot |
The Journal of biological chemistry |
Medium |
16537540
|
| 2011 |
RBFOX2 activates exon 16 5' splice site utilization by recruiting U1 snRNP through direct interaction between its C-terminal domain and the zinc finger region of U1C, stabilizing the pre-mRNA–U1 snRNP complex. Strengthening the native weak 5' splice site to consensus abolishes RBFOX2 dependence. |
Minigene splicing assays, engineered 5' splice site mutants, in vitro protein-protein interaction assays, U1 snRNP recruitment assays |
Molecular and cellular biology |
Medium |
22083953
|
| 2004 |
SF2/ASF binds a CAGACAT exonic splicing enhancer in exon 16, stimulates exon 16 inclusion in in vitro and in vivo splicing assays, and its expression is upregulated during erythroid differentiation correlating with exon 16 inclusion. |
UV cross-linking/immunoprecipitation, in vitro complementation splicing assays, MEL cell minigene transfection, immunoblot |
Blood |
Medium |
15522963
|
| 2017 |
Splicing factors TIA1 and Pcbp1 bind cooperatively to a UUUUCCCCCC motif between the branch point and 3' splice site of exon 16. RBM39 (whose expression rises during erythroid differentiation) enhances the effect of TIA1 and Pcbp1, interacts with U2AF65 and SF3b155, and promotes U2 snRNP recruitment to the branch point, facilitating exon 16 inclusion. |
In vitro RNA binding assays, minigene splicing assays, co-immunoprecipitation of splicing factors, spliceosome assembly assays |
Molecular and cellular biology |
Medium |
28193846
|
| 2008 |
Alternatively spliced exon 5 of the 4.1R FERM domain encodes a second binding site for p55, distinct from the exon 10-encoded site; both bind independent sites within the D5 domain of p55. Inclusion of exon 5 is necessary for membrane targeting of the full-length 135 kDa 4.1R isoform in epithelial cells. |
Competition binding assays, Surface Plasmon Resonance, transfection/immunofluorescence for localization |
Biochimica et biophysica acta |
Medium |
18952129
|
| 2003 |
4.1R interacts with merlin/4.1B interactors including CD44 and betaII-spectrin in meningioma cells. Overexpression of 4.1R reduces meningioma cell proliferation, and 4.1R membrane localization increases under growth arrest conditions. |
Co-immunoprecipitation, Western blot, cell proliferation assays, immunofluorescence |
Neurobiology of disease |
Medium |
12901833
|
| 2009 |
4.1R directly associates with adherens junction protein beta-catenin via its membrane-binding domain (specifically the armadillo repeats 1-2 of beta-catenin). Epithelial-specific 4.1R isoforms containing exon 17b (4.1R+17b) are exclusively co-localized with AJs; exon 17b-encoded peptide provides a bispecific interaction with the actin cytoskeleton and promotes fodrin-actin complex formation. Depletion of 4.1R+17b or overexpression of 4.1R-17b reduces junctional actin and spectrin and impairs E-cadherin assembly during AJ reassembly. |
Co-immunoprecipitation, pull-down assays with recombinant domains, siRNA knockdown, calcium switch AJ reassembly assay, immunofluorescence |
The Journal of biological chemistry |
Medium |
31776189
|
| 2021 |
4.1R functions as a member of the NuMA-LGN-dynein/dynactin complex to regulate mitotic spindle orientation during erythroid differentiation. The 4.1R-NuMA interaction is required for asymmetric segregation of Numb to daughter cells; disruption of this complex increases Notch signaling and decreases erythroblast population. |
siRNA depletion, gene replacement, co-immunoprecipitation, immunofluorescence, Notch signaling reporter |
The Journal of biological chemistry |
Medium |
34364872
|
| 2015 |
4.1R directly binds Kell blood group protein; pull-down and co-immunoprecipitation from erythrocyte membranes showed a direct interaction, with the R46R motif in the Kell juxta-membrane region binding to lobe B of the 4.1R FERM domain. 4.1R deficiency is associated with reduction of Kell, XK, DARC, and the glycosylated form of urea transporter B. |
In vitro pull-down, co-immunoprecipitation, recombinant domain-mapping |
British journal of haematology |
Medium |
26455906
|
| 2016 |
4.1R associates with VHL protein and, when overexpressed, reverses VHL-mediated ubiquitination and degradation of myogenin, stabilizing myogenin protein levels. 4.1R depletion impairs skeletal muscle differentiation, decreasing myosin heavy and light chains, caveolin-3, and myogenin protein (but not mRNA). |
siRNA knockdown, co-immunoprecipitation, ubiquitination assays, myoblast differentiation assays, 4.1R-/- MEF MyoD-induced differentiation |
The Journal of biological chemistry |
Medium |
27780863
|
| 2020 |
In non-small cell lung cancer, EPB41 protein directly associates with ALDOC (aldolase C). Loss of EPB41 releases ALDOC from the EPB41-ALDOC complex, disassembling the beta-catenin destruction complex, reducing beta-catenin proteolytic degradation, and activating Wnt/β-catenin target oncogenes. |
Co-immunoprecipitation, in vitro interaction assays, beta-catenin stability and localization assays, tumor xenograft model |
Cancer letters |
Medium |
33242559
|
| 2019 |
4.1R binds directly to EGFR and reduces EGFR phosphorylation/activation in keratinocytes. 4.1R knockout augments EGFR-mediated Akt/ERK signaling, causing keratinocyte hyperproliferation that is reversed by EGFR or MEK inhibitors. |
Co-immunoprecipitation, immunofluorescence, 4.1R-/- mouse keratinocytes, pharmacological inhibitors |
Experimental cell research |
Medium |
31562860
|
| 2024 |
4.1R directly interacts with TLR4 and inhibits AKT/HIF-1α signaling. 4.1R deficiency enhances glycolytic metabolism via upregulation of PKM2 and promotes M1 macrophage polarization, exacerbating sepsis-induced liver injury. |
Co-immunoprecipitation, 4.1R-/- mice, glycolysis assays, PKM2 and HIF-1α pathway analysis |
International immunopharmacology |
Low |
38237224
|
| 2020 |
4.1R is required for FcεRI-mediated mast cell activation. In 4.1R-KO mast cells, antigen-induced phosphorylation of SYK and downstream signaling molecules (LAT1, PLCγ1, SHP1, SHIP, p38, ERK, JNK, STAT5, CBL, mTOR) are reduced while FcεRI β and γ subunit phosphorylation is unaffected. LAT1 and LAT2 are both present in 4.1R immunocomplexes. |
4.1R-KO mouse BMMCs, phosphorylation assays, co-immunoprecipitation, degranulation and calcium response assays, passive cutaneous anaphylaxis in vivo |
Frontiers in immunology |
Medium |
31993060
|
| 2020 |
CADM1 recruits 4.1R to the plasma membrane of small-cell lung cancer cells through its cytoplasmic 4.1 protein-binding motif. Knockdown of 4.1R suppresses the CADM1-enhanced colony formation, indicating 4.1R is required for the oncogenic role of CADM1 in SCLC. |
CADM1 deletion/point mutant analysis, siRNA knockdown, soft agar colony formation assay, immunofluorescence |
Biochemical and biophysical research communications |
Low |
33298314
|
| 2001 |
An 80 kDa 4.1R polypeptide is enriched ~11-fold in forebrain postsynaptic density (PSD) preparations. Blot overlay assays identified neurofilament L and alpha-internexin as 4.1R-binding proteins in PSDs; a complex containing 80 kDa 4.1R, alpha-internexin, and neurofilament L was immunoprecipitated from brain extract. |
Subcellular fractionation, blot overlay assays, co-immunoprecipitation from brain extract |
European journal of biochemistry |
Low |
11179975
|
| 2019 |
4.1R negatively regulates CD8+ T cell activation by directly binding LAT (co-immunoprecipitation), inhibiting LAT phosphorylation and downstream ERK signaling; 4.1R-/- CD8+ T cells show enhanced proliferation, IL-2 and IFNγ secretion, and T cell-dependent immune responses. |
4.1R-/- mouse, co-immunoprecipitation, phosphorylation assays, proliferation and cytokine assays |
Immunology |
Medium |
31135971
|