Affinage

GYPC

Glycophorin-C · UniProt P04921

Length
128 aa
Mass
13.8 kDa
Annotated
2026-06-10
100 papers in source corpus 4 papers cited in narrative 4 extracted findings
Cross-family judge vs UniProt: Affinage preferred faithfulness: 5/5 claims corpus-supported (100%)

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

GYPC encodes glycophorin C, an erythrocyte surface sialoglycoprotein that acts as a receptor on the red cell surface and contributes to red cell turnover and host-pathogen interaction (PMID:24652986, PMID:15801965). Glycophorin C serves as a direct rosetting receptor for Plasmodium vivax, mediating adhesion of infected erythrocytes to normocytes; antibody blockade of its BRIC 4 region and receptor knockdown both reduce rosette formation (PMID:24652986). Ligation of the glycophorin C extracellular domain triggers phosphatidylserine exposure on the outer membrane leaflet and subsequent loss of erythrocyte viability, a response that depends on an intact extracellular domain as shown by its absence in Gerbich-variant erythrocytes bearing truncating exon deletions (PMID:15801965). A single GYPC transcript yields two proteins, glycophorin C and glycophorin D, through alternative translation initiation at two start codons (PMID:19679754). Beyond these receptor and turnover roles, the intracellular interactions of glycophorin C with the membrane skeleton are referenced in the corpus only as prior knowledge and are not experimentally established within these findings (PMID:28272739).

Mechanistic history

Synthesis pass · year-by-year structured walk · 4 steps
  1. 2005 Medium

    Established that engaging glycophorin C on the red cell surface is not inert but actively signals membrane reorganization, linking GPC to phosphatidylserine externalization and red cell clearance.

    Evidence Annexin V PS-binding assay after BRIC-10 ligation, with Gerbich-variant erythrocytes (Yus, Gerbich, Ls(a)) and trypsin controls mapping the requirement to the extracellular domain

    PMID:15801965

    Open questions at the time
    • The intracellular signaling pathway connecting extracellular ligation to PS exposure is not defined
    • Single-lab study without independent replication
    • Physiological ligand driving this response in vivo is unknown
  2. 2009 Low

    Resolved how one gene produces two distinct glycoproteins, showing GPC and GPD arise from alternative translation initiation on a single transcript, with GPC start-codon evolution being a human-specific trait.

    Evidence Comparative genomic sequence analysis across Hominoidea, population genetics, and translation initiation codon mapping

    PMID:19679754

    Open questions at the time
    • Primarily computational/comparative analysis without direct protein-level confirmation of the two initiation products
    • Positive selection by P. falciparum invasion pressure is hypothesized, not demonstrated
    • Functional distinction between GPC and GPD not addressed
  3. 2014 Medium

    Defined a host-pathogen receptor function, establishing glycophorin C as a direct receptor mediating Plasmodium vivax rosetting of infected erythrocytes to normocytes.

    Evidence Anti-CD236R (BRIC 4) Fab inhibition and CD236R knockdown of stem-cell-derived normocytes in ex vivo P. vivax rosetting assays

    PMID:24652986

    Open questions at the time
    • The parasite ligand binding glycophorin C is not identified
    • Single-lab study with two orthogonal methods but no independent confirmation
    • Structural basis of the GPC-parasite interaction unresolved
  4. 2017 Low

    Characterized the molecular basis of Gerbich blood group phenotypes, mapping them to three classes of GYPC exon deletions driven by a duplication-prone homologous genomic region.

    Evidence Molecular genotyping of 29 rare Yus/Gerbich/Leach samples and sequence homology analysis of GYPC genomic regions

    PMID:28272739

    Open questions at the time
    • Protein 4.1/p55 interaction cited as prior knowledge, not experimentally confirmed here
    • Functional consequences of each deletion class on membrane stability not directly assayed
    • Structural inference of the duplication event not experimentally validated

Open questions

Synthesis pass · forward-looking unresolved questions
  • The intracellular signaling mechanism linking GPC extracellular ligation to phosphatidylserine exposure, and the identity of the P. vivax ligand binding GPC, remain unresolved.
  • No molecular pathway connects GPC ligation to PS externalization
  • No identified parasite ligand for the rosetting interaction
  • No structural model of GPC engagement

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0001618 virus receptor activity 1
Localization
GO:0005886 plasma membrane 2

Evidence

Reading pass · 4 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2014 Glycophorin C (CD236R/GYPC) functions as a receptor mediating Plasmodium vivax rosetting of infected erythrocytes to normocytes. Antibody fragment (Fab) against the BRIC 4 region of CD236R significantly inhibited rosette formation, and CD236R knockdown normocytes derived from hematopoietic stem cells showed reduced rosetting, establishing GYPC as a direct rosetting receptor for P. vivax. Anti-CD236R antibody inhibition assays, CD236R knockdown normocytes derived from hematopoietic stem cells, ex vivo rosetting assays with P. vivax isolates Blood Medium 24652986
2005 Ligation of glycophorin C (GPC) on erythrocytes with monoclonal antibody BRIC-10 induces phosphatidylserine (PS) exposure on the outer leaflet of the erythrocyte membrane. This effect requires the extracellular domain of GPC: Gerbich variant phenotypes with truncated extracellular domains (Yus, exon 2 deletion; Gerbich, exon 3 deletion) did not expose PS following GPC ligation, while Ls(a) erythrocytes (exon 3 duplication) did. GPC ligation also resulted in loss of erythrocyte viability after 24 h, identifying a pathway linking GPC to PS exposure and red cell turnover. Annexin V binding assay for PS detection, tryptic digestion controls, comparison of wild-type vs. Gerbich variant erythrocytes (Yus, Gerbich, Ls(a) phenotypes) British journal of haematology Medium 15801965
2009 GYPC encodes two distinct erythrocyte surface sialoglycoproteins, glycophorin C (GPC) and glycophorin D (GPD), via initiation of translation at two different start codons on a single transcript. The ability to encode both GPC and GPD is a uniquely human trait caused by evolution of the GPC start codon in the human lineage; GPD continues to be produced through leaky translation. Molecular evolutionary analysis revealed accelerated nonsynonymous divergence of GYPC specifically in the human lineage, consistent with positive selection, hypothesized to be driven by P. falciparum invasion pressure. Comparative genomic sequence analysis across Hominoidea, population genetics analysis of human polymorphism, translation initiation codon mapping Molecular biology and evolution Low 19679754
2017 Three classes of GYPC exon deletions underlie rare Gerbich blood group phenotypes: deletion of exon 2 (Yus type, GE:-2,3,4), deletion of exon 3 (Gerbich type, GE:-2,-3,4), and deletion of exons 3 and 4 (Leach type). Molecular characterization of 29 rare samples revealed that a 3600 bp region encompassing exon 2 shares high sequence homology with the region flanking exon 3, indicating an evolutionary duplication event that predisposes to these deletions. The intracellular portion of GPC stabilizes red blood cell membranes through interaction with protein 4.1 and p55. Molecular genotyping of 29 rare blood samples with Yus and Gerbich phenotypes; sequence homology analysis of GYPC genomic regions British journal of haematology Low 28272739

Source papers

Stage 0 corpus · 100 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2001 Herpes simplex virus gE/gI sorts nascent virions to epithelial cell junctions, promoting virus spread. Journal of virology 174 11134295
2005 Ge-1 is a central component of the mammalian cytoplasmic mRNA processing body. RNA (New York, N.Y.) 157 16314453
2006 The high grain protein content gene Gpc-B1 accelerates senescence and has pleiotropic effects on protein content in wheat. Journal of experimental botany 126 16831844
1997 Endocytosis and recycling of varicella-zoster virus Fc receptor glycoprotein gE: internalization mediated by a YXXL motif in the cytoplasmic tail. Journal of virology 124 9094682
1992 Receptor properties of two varicella-zoster virus glycoproteins, gpI and gpIV, homologous to herpes simplex virus gE and gI. Journal of virology 124 1316474
2014 Detection of microglial activation in an acute model of neuroinflammation using PET and radiotracers 11C-(R)-PK11195 and 18F-GE-180. Journal of nuclear medicine : official publication, Society of Nuclear Medicine 122 24516258
1998 Role of envelope protein gE endocytosis in the pseudorabies virus life cycle. Journal of virology 105 9573220
2014 18F-GE-180: a novel TSPO radiotracer compared to 11C-R-PK11195 in a preclinical model of stroke. European journal of nuclear medicine and molecular imaging 103 25351507
1991 Accumulation of glycerophosphocholine (GPC) by renal cells: osmotic regulation of GPC:choline phosphodiesterase. Proceedings of the National Academy of Sciences of the United States of America 95 1652765
2006 Cytoplasmic residues of herpes simplex virus glycoprotein gE required for secondary envelopment and binding of tegument proteins VP22 and UL11 to gE and gD. Journal of virology 88 17035313
2008 Herpes simplex virus gE/gI and US9 proteins promote transport of both capsids and virion glycoproteins in neuronal axons. Journal of virology 81 18753205
2002 The G-protein gamma subunit gpc-1 of the nematode C.elegans is involved in taste adaptation. The EMBO journal 77 11867526
2000 The extracellular domain of herpes simplex virus gE is sufficient for accumulation at cell junctions but not for cell-to-cell spread. Journal of virology 74 10666258
1997 Varicella-zoster virus Fc receptor gE glycoprotein: serine/threonine and tyrosine phosphorylation of monomeric and dimeric forms. Journal of virology 71 8985329
2015 Biosafety research for non-target organism risk assessment of RNAi-based GE plants. Frontiers in plant science 70 26594220
2016 GPC-3 in hepatocellular carcinoma: current perspectives. Journal of hepatocellular carcinoma 69 27878117
2015 Pathogenicity and immunogenicity of a gE/gI/TK gene-deleted pseudorabies virus variant in susceptible animals. Veterinary microbiology 67 26711045
1998 Virulence, immunogenicity and reactivation of bovine herpesvirus 1 mutants with a deletion in the gC, gG, gI, gE, or in both the gI and gE gene. Vaccine 67 9627937
1998 Cloning, characterization and expression of the gene coding for a cytosine-5-DNA methyltransferase recognizing GpC. Nucleic acids research 67 9705505
1996 Synthesis, processing, and oligomerization of bovine herpesvirus 1 gE and gI membrane proteins. Journal of virology 55 8892910
2013 Functional characterization of GPC-1 genes in hexaploid wheat. Planta 49 24170335
2014 Glycophorin C (CD236R) mediates vivax malaria parasite rosetting to normocytes. Blood 47 24652986
2003 Herpes simplex virus gE/gI expressed in epithelial cells interferes with cell-to-cell spread. Journal of virology 46 12552008
2020 Construction and immunogenicity of a gE/gI/TK-deleted PRV based on porcine pseudorabies virus variant. Molecular and cellular probes 45 32464159
2012 Assessment of GE food safety using '-omics' techniques and long-term animal feeding studies. New biotechnology 44 23253614
2015 Antioxidative effect of carboxyethylgermanium sesquioxide (Ge-132) on IVM of porcine oocytes and subsequent embryonic development after parthenogenetic activation and IVF. Theriogenology 42 25913277
2014 The herpes virus Fc receptor gE-gI mediates antibody bipolar bridging to clear viral antigens from the cell surface. PLoS pathogens 41 24604090
2013 Values of circulating GPC-3 mRNA and alpha-fetoprotein in detecting patients with hepatocellular carcinoma. Hepatobiliary & pancreatic diseases international : HBPD INT 39 23558072
2008 Electrodeposition of Ge, Si and Si x Ge 1-x from an air- and water-stable ionic liquid. Physical chemistry chemical physics : PCCP 38 18665315
2004 pH dependence and stoichiometry of binding to the Fc region of IgG by the herpes simplex virus Fc receptor gE-gI. The Journal of biological chemistry 37 14734541
1995 Immunohistochemical identification of varicella-zoster virus gene 63-encoded protein (IE63) and late (gE) protein on smears and cutaneous biopsies: implications for diagnostic use. Journal of medical virology 37 8636701
2018 Structure, Function, and Applications of the Georgetown-Einstein (GE) Breast Cancer Simulation Model. Medical decision making : an international journal of the Society for Medical Decision Making 33 29554462
2005 Expression of phosphatidylserine (PS) on wild-type and Gerbich variant erythrocytes following glycophorin-C (GPC) ligation. British journal of haematology 31 15801965
2020 Multivariable G-E interplay in the prediction of educational achievement. PLoS genetics 30 33201880
1992 Effects of dietary protein and salt on rat renal osmolytes: covariation in urea and GPC contents. The American journal of physiology 30 1415731
2022 Delineating the mechanism of anti-Lassa virus GPC-A neutralizing antibodies. Cell reports 29 35613585
2022 GE-Impute: graph embedding-based imputation for single-cell RNA-seq data. Briefings in bioinformatics 28 35901457
2020 Comparison of gE/gI- and TK/gE/gI-Gene-Deleted Pseudorabies Virus Vaccines Mediated by CRISPR/Cas9 and Cre/Lox Systems. Viruses 27 32230737
2018 Inverse Resistance Change Cr2Ge2Te6-Based PCRAM Enabling Ultralow-Energy Amorphization. ACS applied materials & interfaces 27 29280374
1997 Acyl-GPC and alkenyl/alkyl-GPC:acyl-CoA acyltransferases. Biochimica et biophysica acta 27 9370324
2018 Detection of glypican-1 (GPC-1) expression in urine cell sediments in prostate cancer. PloS one 26 29672570
2016 New insights and current tools for genetically engineered (GE) sheep and goats. Theriogenology 26 27155732
1997 Induction of neutralizing antibody and T-cell responses to varicella-zoster virus (VZV) using Ty-virus-like particles carrying fragments of glycoprotein E (gE). Vaccine 26 9178473
1995 Insulinopenia and hyperglycemia influence the in vivo partitioning of GE and SI. The American journal of physiology 26 7900787
1995 Identification of immunodominant regions and linear B cell epitopes of the gE envelope protein of varicella-zoster virus. Virology 25 8553555
2011 Drosophila Ge-1 promotes P body formation and oskar mRNA localization. PloS one 24 21655181
2021 Pathogenicity and immunogenicity of a gI/gE/TK/UL13-gene-deleted variant pseudorabies virus strain in swine. Veterinary microbiology 23 34004569
2009 Insulin-degrading enzyme binds to the nonglycosylated precursor of varicella-zoster virus gE protein found in the endoplasmic reticulum. Journal of virology 23 19864391
2008 GPC receptors and not ligands decide the binding mode in neuropeptide Y multireceptor/multiligand system. Biochemistry 23 18457425
1987 Biological activities and antitumor mechanism of an immunopotentiating organogermanium compound, Ge-132 (review). In vivo (Athens, Greece) 23 2979786
2010 Insulin degrading enzyme induces a conformational change in varicella-zoster virus gE, and enhances virus infectivity and stability. PloS one 22 20593027
2022 Jin-Tian-Ge ameliorates ovariectomy-induced bone loss in rats and modulates osteoblastogenesis and osteoclastogenesis in vitro. Chinese medicine 21 36195960
2020 Pseudorabies virus glycoprotein gE suppresses interferon-β production via CREB-binding protein degradation. Virus research 21 33152381
2011 Immunofluorescence analysis of duck plague virus gE protein on DPV-infected ducks. Virology journal 21 21235807
2019 Identification of linear B cell epitope on gB, gC, and gE proteins of porcine pseudorabies virus using monoclonal antibodies. Veterinary microbiology 20 31213277
2009 GPC-1, a G protein gamma-subunit, regulates olfactory adaptation in Caenorhabditis elegans. Genetics 20 19189947
2009 Molecular evolution of GYPC: evidence for recent structural innovation and positive selection in humans. Molecular biology and evolution 20 19679754
2003 Expression of pseudorabies virus gE epitopes in Pichia pastoris and its utilization in an indirect PRV gE-ELISA. Journal of virological methods 20 14625049
2024 Gpcpd1-GPC metabolic pathway is dysfunctional in aging and its deficiency severely perturbs glucose metabolism. Nature aging 19 38238601
2019 Functional interactions between herpes simplex virus pUL51, pUL7 and gE reveal cell-specific mechanisms for epithelial cell-to-cell spread. Virology 19 31493658
2019 CCl4-Induced Liver Injury Was Ameliorated by Qi-Ge Decoction through the Antioxidant Pathway. Evidence-based complementary and alternative medicine : eCAM 19 31976000
2018 Antioxidant Activity of Ge-132, a Synthetic Organic Germanium, on Cultured Mammalian Cells. Biological & pharmaceutical bulletin 19 29503400
2016 What's the Best Way to Treat GE Junction Tumors? Approach Like Gastric Cancer. Annals of surgical oncology 19 27459983
2016 Ex Vivo Tracing of NMDA and GABA-A Receptors in Rat Brain After Traumatic Brain Injury Using 18F-GE-179 and 18F-GE-194 Autoradiography. Journal of nuclear medicine : official publication, Society of Nuclear Medicine 18 27199360
2009 Assembly of arenavirus envelope glycoprotein GPC in detergent-soluble membrane microdomains. Journal of virology 18 19625404
2007 Cellular and viral factors regulate the varicella-zoster virus gE promoter during viral replication. Journal of virology 18 17634217
1998 Varicella-zoster virus glycoprotein gE: endocytosis and trafficking of the Fc receptor. The Journal of infectious diseases 18 9852964
1997 The gE and gI homologs from two alphaherpesviruses have conserved and divergent neuroinvasive properties. Journal of virology 18 9223471
2023 Pathogenicity and immunogenicity of gI/gE/TK-gene-deleted Felid herpesvirus 1 variants in cats. Virology journal 17 37143065
2023 Glypican-3 (GPC-3) Structural Analysis and Cargo in Serum Small Extracellular Vesicles of Hepatocellular Carcinoma Patients. International journal of molecular sciences 17 37446098
2010 Cloning, expression and characterization of gE protein of duck plague virus. Virology journal 17 20529349
1982 Priming of reovirus transcription by GppppG and formation of CpG(5')GpC. Proceedings of the National Academy of Sciences of the United States of America 17 6959105
2022 Evaluation of the Safety and Immunogenicity of Duck-Plague Virus gE Mutants. Frontiers in immunology 16 35515004
2019 HIF1α-siRNA and gemcitabine combination-based GE-11 peptide antibody-targeted nanomedicine for enhanced therapeutic efficacy in pancreatic cancers. Journal of drug targeting 16 30481072
2006 Pathogenicity and immunogenicity of equine herpesvirus type 1 mutants defective in either gI or gE gene in murine and hamster models. The Journal of veterinary medical science 16 17085880
2024 GPC-3 in hepatocellular carcinoma; A novel biomarker and molecular target. Experimental cell research 15 39725192
2020 Tetra-(p-tolyl)antimony(III)-Containing Heteropolytungstates, [{(p-tolyl)SbIII}4(A-α-XW9O34)2] (X = P, As, or Ge): Synthesis, Structure, and Study of Antibacterial and Antitumor Activity. Inorganic chemistry 15 32037809
2022 Construction and Immunogenicity of a Recombinant Pseudorabies Virus Variant With TK/gI/gE/11k/28k Deletion. Frontiers in veterinary science 14 35146013
2020 Salinomycin-loaded PLA nanoparticles: drug quantification by GPC and wave voltammetry and biological studies on osteosarcoma cancer stem cells. Analytical and bioanalytical chemistry 14 32451642
2020 Promoting Ge Alloying Reaction via Heterostructure Engineering for High Efficient and Ultra-Stable Sodium-Ion Storage. Advanced science (Weinheim, Baden-Wurttemberg, Germany) 14 33240776
2013 Identification and functional analysis of membrane proteins gD, gE, gI, and pUS9 of Infectious laryngotracheitis virus. Avian diseases 14 23901755
2023 Safety and immunogenicity of a TK/ gI/gE gene-deleted feline herpesvirus-1 mutant constructed via CRISPR/Cas9 in feline. Veterinary microbiology 13 37003192
2023 GPC-100, a novel CXCR4 antagonist, improves in vivo hematopoietic cell mobilization when combined with propranolol. PloS one 13 37878624
2022 A biodegradable in situ Zn-Mg2Ge composite for bone-implant applications. Acta biomaterialia 13 35580830
2021 Robust and Facile Automated Radiosynthesis of [18F]FSPG on the GE FASTlab. Molecular imaging and biology 13 34013395
2022 Evaluation of safety and immunogenicity of duck-plague virus gC/gE double gene deletion. Frontiers in immunology 12 36059553
2020 GPC-1, a novel class A carbapenemase detected in a clinical Pseudomonas aeruginosa isolate. The Journal of antimicrobial chemotherapy 12 31960033
2019 Study on Diagnostic Values of Astrocyte Elevated Gene 1 (AEG-1) and Glypican 3 (GPC-3) in Hepatocellular Carcinoma. American journal of clinical pathology 12 31305883
1989 Examination of the potential role of the glycerophosphorylcholine (GPC) pathway in the biosynthesis of phosphatidylcholine by liver and lung. Biochimica et biophysica acta 12 2775769
2023 Liang-Ge-San: a classic traditional Chinese medicine formula, attenuates acute inflammation via targeting GSK3β. Frontiers in pharmacology 11 37456759
2023 Mitochondrial GpC and CpG DNA Hypermethylation Cause Metabolic Stress-Induced Mitophagy and Cholestophagy. International journal of molecular sciences 11 38003603
2022 Ascertaining yield and grain protein content stability in wheat genotypes having the Gpc-B1 gene using univariate, multivariate, and correlation analysis. Frontiers in genetics 11 36160017
2022 Enhancing anti-tumor efficacy and immune memory by combining 3p-GPC-3 siRNA treatment with PD-1 blockade in hepatocellular carcinoma. Oncoimmunology 11 36524206
2021 A novel multifunctional gold nanorod-mediated and tumor-targeted gene silencing of GPC-3 synergizes photothermal therapy for liver cancer. Nanotechnology 11 33445163
2020 Sublethal Endpoints in Non-target Organism Testing for Insect-Active GE Crops. Frontiers in bioengineering and biotechnology 11 32582674
2017 Genetic background of the rare Yus and Gerbich blood group phenotypes: homologous regions of the GYPC gene contribute to deletion alleles. British journal of haematology 11 28272739
2016 NET-GE: a web-server for NETwork-based human gene enrichment. Bioinformatics (Oxford, England) 11 27485441
2023 In silico and in vivo demonstration of the regulatory mechanism of Qi-Ge decoction in treating NAFLD. Annals of medicine 9 37096878
2022 Evaluation of HSV-2 gE Binding to IgG-Fc and Application for Vaccine Development. Vaccines 9 35214644
1990 The role and mechanism of the GTP-binding protein GE in the control of regulated exocytosis. Biochemical Society symposium 9 2124123

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