Affinage

ELOC

Elongin-C · UniProt Q15369

Length
112 aa
Mass
12.5 kDa
Annotated
2026-06-09
21 papers in source corpus 9 papers cited in narrative 9 extracted findings
Cross-family judge vs UniProt: Affinage preferred faithfulness: 4/5 claims corpus-supported (80%)

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

ELOC (elongin C, TCEB1) is an adaptor subunit of cullin-RING E3 ubiquitin ligase complexes, most prominently the VCB-CR/VBC complex (pVHL–elongin C–elongin B–cullin 2–RBX1) that mediates oxygen sensing and degradation of hypoxia-inducible factors (PMID:35323939). Within this complex ELOC bridges VHL to the cullin scaffold through hydrophobic contacts, and germline and somatic hotspot mutations at residues such as Y79 and E92 disrupt the ELOC–VHL interface; combined with chromosome 8 loss of heterozygosity, biallelic ELOC inactivation phenocopies VHL loss, drives convergent HIF pathway activation, and causes renal cell carcinoma and a VHL-disease-like syndrome that regresses under HIF-2α inhibition (PMID:35323939, PMID:41224595, PMID:37088333, PMID:31813809). ELOC additionally serves as an adaptor in CUL5-based complexes: as part of the HIV Vif–CBFβ–ELOB–ELOC–CUL5 assembly it directly impedes APOBEC3G DNA deamination independently of proteasomal degradation (PMID:38740386). The ELOC binding surfaces for CUL2 and CUL5 are spatially distinct, allowing selective small-molecule modulation of CRL2 versus CRL5 assembly (PMID:39881207). Beyond its E3 adaptor role, ELOC expression promotes cancer cell invasion and anchorage-independent growth through transcriptional regulation of pro-invasive genes (PMID:18844214), and its protein level is controlled post-transcriptionally by Staufen1-mediated decay of TCEB1 mRNA, which derepresses HIF-1α (PMID:34163032).

Mechanistic history

Synthesis pass · year-by-year structured walk · 7 steps
  1. 2009 Medium

    Before its tumor-suppressor role was defined, ELOC was tested directly for a pro-tumorigenic cellular function, establishing that ELOC expression supports invasion and growth.

    Evidence shRNA knockdown and overexpression with Matrigel invasion, anchorage-independent growth, and transcriptional profiling in prostate cancer and NIH 3T3 cells

    PMID:18844214

    Open questions at the time
    • Does not identify the molecular activity of ELOC mediating the invasive transcriptional program
    • No link to E3 ligase function established here
  2. 2014 Low

    To explain how viral hijacking of ELOC occurs, the Vif binding mode was modeled, indicating that BC-box leucines engage ELOC by hydrophobic interactions.

    Evidence Ab initio modeling (Rosetta), docking, and molecular dynamics of the Vif-EloBC complex

    PMID:24586532

    Open questions at the time
    • Purely computational with no experimental validation of the interface
    • Does not assay complex function or ubiquitination activity
  3. 2019 Medium

    It was unknown whether ELOC mutations in RCC act as drivers; clonal and copy-number analysis established biallelic ELOC inactivation at the VHL-binding hotspot as a tumor-suppressor mechanism.

    Evidence Somatic mutation, copy number, and cancer cell fraction analysis of RCC tumors

    PMID:31813809

    Open questions at the time
    • Hydrophobic interaction disruption inferred from mutation position, not directly assayed
    • No functional rescue or HIF readout in this study
  4. 2022 Medium

    Whether a germline ELOC variant could cause disease by mimicking VHL deficiency was open; a de novo Y79C variant was shown to recapitulate pVHL-deficient hypoxic signalling.

    Evidence Trio whole-exome sequencing, paired tumor/blood analysis, IHC for hypoxia-responsive proteins, RCC dataset bioinformatics

    PMID:35323939

    Open questions at the time
    • Single proband study
    • Direct biochemical demonstration of disrupted VCB-CR assembly not performed
  5. 2023 Medium

    To distinguish ELOC-driven from VHL-driven RCC, mutual exclusivity and downstream HIF output were compared, showing convergent HIF pathway activation despite reduced ELOC expression.

    Evidence OncoScan copy number, WES, HADDOCK docking of an ELOC duplication, and hyper reaction monitoring mass spectrometry of CA9/VEGF-A

    PMID:37088333

    Open questions at the time
    • Structural disruption modeled computationally, not by experimental structure
    • Single-lab proteomic cohort
  6. 2024 Medium

    It was unclear whether the ELOC-containing Vif-CUL5 complex acted only through degradation; functional assays revealed a direct, degradation-independent inhibition of APOBEC3G deamination.

    Evidence SELEX aptamer selection against the VβBCC complex and DNA deamination activity/inhibition assays

    PMID:38740386

    Open questions at the time
    • Mechanism of direct A3G inhibition by the complex not structurally resolved here
    • Contribution of ELOC specifically versus other subunits not isolated
  7. 2025 Medium

    Two advances clarified ELOC druggability and disease genetics: a multigenerational E92G family established ELOC as a VHL-disease gene rescuable by HIF-2α inhibition, and fragment screening defined a ligandable ELOC pocket distinguishing CUL2 from CUL5 binding.

    Evidence Germline co-segregation, tumor LOH, belzutifan clinical response (family study); fragment screening with binding-site/interface mapping of the VBC complex

    PMID:39881207 PMID:41224595

    Open questions at the time
    • Family study is a single pedigree
    • Fragment-binding structural method not explicitly defined and selective CRL2 modulation only inferred from interface overlap

Open questions

Synthesis pass · forward-looking unresolved questions
  • How ELOC's invasion-promoting transcriptional role mechanistically relates to its E3 adaptor function remains unresolved.
  • No molecular link between ELOC E3 adaptor activity and the pro-invasive transcriptional program
  • No experimental high-resolution structure of mutant ELOC interfaces in the corpus

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0060090 molecular adaptor activity 3 GO:0140096 catalytic activity, acting on a protein 2
Pathway
R-HSA-1643685 Disease 2 R-HSA-392499 Metabolism of proteins 2 R-HSA-8953897 Cellular responses to stimuli 2
Complex memberships
VCB-CR (pVHL-elongin C-elongin B-CUL2-RBX1)Vif-CBFβ-ELOB-ELOC-CUL5 (VβBCC)

Evidence

Reading pass · 9 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2022 ELOC (elongin C) encodes a key component of the VCB-CR E3 ubiquitin ligase complex (comprising pVHL, elongin C, elongin B, cullin 2, and ring box 1), which mediates oxygen sensing and degradation of hypoxia-inducible factors. A germline de novo pathogenic variant ELOC p.Tyr79Cys was shown to mimic the effects of pVHL deficiency on hypoxic signalling, and tumor analysis demonstrated chromosome 8 loss and expression of hypoxia-responsive proteins consistent with loss of VCB-CR complex activity. Whole-exome sequencing of proband trio, paired tumor/blood DNA analysis, bioinformatics analysis of RCC dataset, immunohistochemistry for hypoxia-responsive proteins Human molecular genetics Medium 35323939
2025 A germline ELOC p.E92G variant in a multigenerational family causes VHL disease manifestations (hemangioblastomas, ccRCC, pancreatic neuroendocrine tumors, pheochromocytomas). Tumor analysis demonstrated loss of heterozygosity at chromosome 8 (encoding ELOC), consistent with biallelic ELOC inactivation and loss of VCB-Cul2 E3-ubiquitin ligase complex activity. Treatment with belzutifan (a HIF-2α inhibitor) caused tumor regression, confirming that these tumors are driven by HIF pathway activation downstream of ELOC loss. Germline sequencing, tumor LOH analysis, chromosomal copy number analysis, clinical response to belzutifan (HIF-2α inhibitor) Urologic oncology Medium 41224595
2023 ELOC mutations (especially Y79C) result in biallelic ELOC inactivation in RCC and are mutually exclusive with biallelic VHL aberrations. A novel ELOC duplication variant was modeled by High Ambiguity Driven biomolecular DOCKing to disrupt the ELOC-VHL interaction interface. Mass spectrometry (hyper reaction monitoring) showed that RCCs with biallelic ELOC alterations have significantly reduced ELOC expression but similar carbonic anhydrase 9 and VEGF-A expression compared with VHL-null ccRCC, indicating convergent HIF pathway activation. OncoScan copy number analysis, whole-exome sequencing, computational docking (HADDOCK), hyper reaction monitoring mass spectrometry Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc Medium 37088333
2019 TCEB1 (ELOC) hotspot mutations in RCC (Y79C/S/F/N) were experimentally shown to always affect residues involved in hydrophobic interactions with VHL, and all tumors showed biallelic inactivation of the TCEB1 gene by combined somatic mutation and copy number alteration analysis, consistent with a tumor suppressor mechanism disrupting the VHL-elongin C interaction. Somatic mutation analysis, copy number alteration analysis, cancer cell fraction estimation (clonal analysis) European urology focus Medium 31813809
2009 shRNA-mediated silencing of TCEB1 (ELOC) significantly decreased cellular invasion of prostate cancer cells (PC-3 and DU145) through Matrigel and reduced anchorage-independent growth of PC-3 cells. Transcriptional profiling of TCEB1-silenced cells revealed decreased expression of genes involved in invasion and metastasis. Overexpression of TCEB1 in NIH 3T3 cells increased growth rate. Lentivirus-mediated shRNA knockdown, Matrigel invasion assay, anchorage-independent growth assay, transcriptional profiling, lentiviral overexpression International journal of cancer Medium 18844214
2025 Fragment screening of the VHL-ELOB-ELOC (VBC) complex identified 7-hydroxycoumarin (7HC) derivatives that bind specifically to the ELOC component rather than VHL. The 7HC binding site on ELOC overlaps with the CUL2 binding interface but not the CUL5 binding interface, indicating that these compounds may selectively modulate CRL2 (but not CRL5) complex formation by competing with CUL2 for ELOC binding. Fragment screening, X-ray crystallography or binding assays (implied by binding site characterization), interface mapping Scientific reports Low 39881207
2014 Computational modeling of HIV Vif showed that residues L146 and L149 of the BC-box motif bind to ELOC (EloC) by hydrophobic interactions, and residue P162 of the PPLP motif is important for EloB binding. Molecular dynamics simulation evaluated stability of the Vif-EloBC complex. Ab initio protein modeling (Rosetta), molecular docking, molecular dynamics simulation PloS one Low 24586532
2021 STAU1 (Staufen1) was shown to bind SPRY4-IT1 lncRNA, which promotes STAU1 recruitment to the 3'-UTR of TCEB1 mRNA (via Alu element base-pairing between SPRY4-IT1 and TCEB1 3'-UTR), leading to STAU1-mediated mRNA decay (SMD) of TCEB1, reduced TCEB1 protein, and consequent upregulation of HIF-1α. STAU1 depletion abrogated TCEB1 SMD. NF-κB/p65 transactivates SPRY4-IT1 to initiate this cascade. RNA overexpression/knockdown, microarray, RNA pulldown/binding assays (STAU1-SPRY4-IT1 interaction), STAU1 depletion rescue, NF-κB reporter/ChIP (implied) Oncogene Medium 34163032
2024 The Vif-CBFβ-ELOB-ELOC-CUL5 (VβBCC) complex was shown by cryo-EM and SELEX to directly impede A3G-mediated DNA deamination independently of proteasomal degradation. RNA aptamers selected against the VβBCC complex restored A3G DNA deamination activity by inhibiting the complex, demonstrating that ELOC-containing VβBCC complex has a direct inhibitory function on A3G beyond promoting its ubiquitination. SELEX (aptamer selection), DNA deamination activity assay, cryo-EM (referenced from prior studies), functional inhibition assay Journal of biochemistry Medium 38740386

Source papers

Stage 0 corpus · 21 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2015 TCEB1-mutated renal cell carcinoma: a distinct genomic and morphological subtype. Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc 131 25676555
2020 "Renal Cell Carcinoma With Leiomyomatous Stroma" Harbor Somatic Mutations of TSC1, TSC2, MTOR, and/or ELOC (TCEB1): Clinicopathologic and Molecular Characterization of 18 Sporadic Tumors Supports a Distinct Entity. The American journal of surgical pathology 95 31850909
2019 Putative Drivers of Aggressiveness in TCEB1-mutant Renal Cell Carcinoma: An Emerging Entity with Variable Clinical Course. European urology focus 41 31813809
2022 Elongin C (ELOC/TCEB1)-associated von Hippel-Lindau disease. Human molecular genetics 31 35323939
2021 NF-κB-activated SPRY4-IT1 promotes cancer cell metastasis by downregulating TCEB1 mRNA via Staufen1-mediated mRNA decay. Oncogene 28 34163032
2009 TCEB1 promotes invasion of prostate cancer cells. International journal of cancer 28 18844214
2023 Biallelic ELOC-Inactivated Renal Cell Carcinoma: Molecular Features Supporting Classification as a Distinct Entity. Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc 20 37088333
2022 Analysis of clinicopathological and molecular features of ELOC(TCEB1)-mutant renal cell carcinoma. Pathology, research and practice 16 35653922
2014 Structural analysis of viral infectivity factor of HIV type 1 and its interaction with A3G, EloC and EloB. PloS one 16 24586532
2025 ELOC-Mutated Renal Cell Carcinoma is a Rare Indolent Tumor With Distinctive Genomic Characteristics. Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc 11 40246078
2025 Comprehensive Analysis of 15 Cases of ELOC -RCC and Identification of Novel Mutation Site. The American journal of surgical pathology 5 40557827
2025 Identification of novel 7-hydroxycoumarin derivatives as ELOC binders with potential to modulate CRL2 complex formation. Scientific reports 2 39881207
2025 Multigenerational VHL family characterized by pathogenic germline ELOC variant: Response to belzutifan. Urologic oncology 2 41224595
2026 ELOC-mutant renal cell carcinoma: practical diagnostic features and differential considerations. Journal of clinical pathology 1 41167807
2023 [Clinicopathological and molecular genetic characteristics of ELOC mutated renal cell carcinoma]. Zhonghua bing li xue za zhi = Chinese journal of pathology 1 38058035
2026 Utility of Next-Generation Sequencing in Renal Neoplasia, Including Tumors With Clear Cytoplasm and Rare Phenotypes (ELOC/MITF Alterations and Mismatch Repair Deficiency). Mayo Clinic proceedings 0 41686095
2026 ELOC-mutated Renal Cell Carcinoma: Clinicopathologic, Immunohistochemical, and Molecular Genetic Analysis of 35 Cases. Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc 0 41690476
2026 Structures of ZYG11B-EloB-EloC-substrate complex reveal mechanisms of CRL2ZYG11B assembly and function. Nature communications 0 41917018
2025 A case report: identifying a novel variant in ELOC(TCEB1)-mutant renal cell carcinoma. Frontiers in oncology 0 41306531
2025 ELOC(TCEB1)-mutated renal cell carcinoma: a case report and clinicopathological analysis. Frontiers in oncology 0 41357565
2024 Selection and characterization of aptamers targeting the Vif-CBFβ-ELOB-ELOC-CUL5 complex. Journal of biochemistry 0 38740386

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