| 1994 |
NOT1 (CDC39) acts as a global negative regulator of transcription in yeast; allele-specific suppression, two-hybrid interaction, and biochemical co-fractionation show NOT1 and NOT2 are nuclear proteins associated in a discrete ~500 kDa complex; NOT1 preferentially represses TATA-less (TC-element) promoters and inhibits the basal RNA polymerase II transcription machinery. |
Genetic epistasis (allele-specific suppression), yeast two-hybrid, biochemical co-fractionation |
Genes & development |
High |
7926748
|
| 1993 |
CDC39/NOT1 encodes an essential nuclear protein (~2108 aa) in yeast that negatively regulates transcription; loss-of-function increases basal transcription of many genes, preferentially affecting the TC TATA element of HIS3. |
Temperature-sensitive mutant analysis, RNA analysis, genetic complementation |
The EMBO journal |
High |
8428577
|
| 1999 |
Not1 directly represses transcription from a TATA-less promoter in vitro; nuclear extracts from a conditional not1 mutant show increased transcription from the HIS3 TATA-less promoter upon shift to restrictive temperature. |
In vitro transcription assay using conditional mutant nuclear extracts |
Biological chemistry |
Medium |
10661863
|
| 2000 |
The essential function of Not1 lies within the Ccr4-Not complex; the C-terminal domain of Not1 is essential for viability and associates with Not5; the N-terminal domain is required for Ccr4 to associate in large complexes. Healthy growth requires physical association of both domains with Ccr4 in large complexes. |
Domain deletion analysis, biochemical co-fractionation, complementation assays in yeast |
Journal of molecular biology |
High |
11023781
|
| 2011 |
Human CNOT1 associates via its central region with the C-terminal domain of tristetraprolin (TTP) in the cytoplasm, and recruits the CAF1 deadenylase through a smaller central domain; CNOT1 is required for rapid decay of ARE-containing mRNAs and acts as a platform that allows TTP to recruit the CAF1 deadenylase. |
Co-immunoprecipitation, siRNA knockdown, mRNA stability assays |
Nucleic acids research |
High |
21278420
|
| 2011 |
CNOT1 depletion in HeLa cells reduces the amounts of other CCR4-NOT subunits, decreases the specific deadenylase activity of co-immunoprecipitated CNOT6L, suppresses P-body formation, and induces ER stress-mediated apoptosis through mRNA stabilization. |
siRNA knockdown, flow cytometry, immunoprecipitation-deadenylase assay, immunofluorescence |
Protein & cell |
High |
21976065
|
| 2012 |
Crystal structure of the yeast Not1 N-terminal arm reveals a HEAT-repeat structure with MIF4G fold domains; a central MIF4G domain of Not1 binds Caf1, which in turn tethers Ccr4; disruption of these interactions impairs cell growth and mRNA deadenylation/decay in vivo. |
X-ray crystallography, biochemical reconstitution, in vivo mRNA decay assays, mutagenesis |
Molecular cell |
High |
22959269
|
| 2012 |
Crystal structures of the human NOT1 CAF1-binding domain alone and in complex with CAF1 show that the NOT1 MIF4G domain binds CAF1 through a pre-formed interface, leaving the CAF1 catalytic site fully accessible; this domain is conserved across eukaryotes. |
X-ray crystallography, structural analysis |
Nucleic acids research |
High |
22977175
|
| 2013 |
Crystal structure of the yeast Not1 C-terminal arm with Not2 and Not5 (2.8 Å) reveals Not1 as a HEAT-repeat scaffold; Not2 and Not5 wrap around Not1 with Sm-fold Not boxes that interact with a noncanonical dimerization surface; the ternary complex binds poly(U) RNA in vitro via a site at the Not5 Not box; disruption of these interactions severely impairs growth in vivo. |
X-ray crystallography, RNA-binding assay, mutagenesis, yeast growth assays |
Nature structural & molecular biology |
High |
24121231
|
| 2014 |
The CNOT9 subunit attaches to the DUF3819 domain of CNOT1; the resulting CNOT1-CNOT9 complex provides W-binding pockets in CNOT9 for TNRC6/GW182 recruitment. Additionally, the CNOT1 MIF4G domain interacts with the C-terminal RecA domain of DDX6, with a crystal structure showing striking similarity to the eIF4G-eIF4A complex; these interactions physically link miRNA target recognition to translational repression, deadenylation, and decapping. |
X-ray crystallography, co-immunoprecipitation, mutagenesis, tethering assays |
Molecular cell |
High |
24768540
|
| 2014 |
Human DDX6 directly binds the MIF4G domain of CNOT1; this interaction resembles eIF4G-eIF4A binding; mutations disrupting DDX6-CNOT1 interaction impair miRISC-mediated gene silencing in human cells, placing DDX6 as a downstream effector of the miRNA pathway through CNOT1. |
Biochemical binding assays, mutagenesis, miRNA reporter silencing assays in human cells |
RNA |
High |
25035296
|
| 2015 |
Crystal structure (2.1 Å) of the human 4E-T CUP-homology domain (CHD)/DDX6/CNOT1 MIF4G ternary complex shows 4E-T CHD wraps around the RecA2 domain of DDX6 and contacts CNOT1; 4E-T CHD can bind DDX6 in the presence or absence of CNOT1 MIF4G, whereas Edc3 and Pat1 FDF motifs are displaced from DDX6 upon CNOT1 MIF4G binding. |
X-ray crystallography, in vitro binding/competition assays |
Cell reports |
High |
26489469
|
| 2015 |
In Xenopus oocytes, CAF1 requires association with NOT1 (the major CCR4-NOT scaffold) to repress translation of a tethered reporter mRNA; NOT1 in turn recruits Xp54 (DDX6) and 4E-T; repression by tethered CAF1, NOT1, and Xp54 is cap/eIF4E-dependent, whereas a 4E-T truncation that still binds eIF4E blocks repression. |
Tethered function assay in Xenopus oocytes, affinity purification-mass spectrometry, co-immunoprecipitation, mutagenesis |
RNA |
High |
26015597
|
| 2018 |
A reconstituted pentameric human Ccr4-Not sub-complex containing the CNOT1 central region (MIF4G + DUF3819 domains) plus CNOT9, BTG2, CAF1, and CCR4 shows that the CNOT1-CNOT9 components stimulate poly(A) RNA deadenylation by the nuclease module. |
In vitro reconstitution of sub-complexes, deadenylation assay |
The Biochemical journal |
High |
30309886
|
| 2018 |
Crystal structure of a NOT1 MIF4G-C connector domain from Chaetomium thermophilum reveals a MIF4G-like fold; comparison with the DDX6-binding MIF4G domain identifies structural differences explaining why the MIF4G-C domain does not interact with DDX6; human MIF4G-C does not stably interact with other CCR4-NOT subunits. |
X-ray crystallography, solution scattering, binding assays |
Journal of structural biology |
Medium |
30367941
|
| 2019 |
Not1-containing assemblysomes in yeast are cytoplasmic particles (distinct from stress granules and P-bodies) that support co-translational assembly of proteasome Rpt1/Rpt2 subunits; immunofluorescence and in situ hybridization show Rpt1- and Rpt2-encoding mRNAs co-localize in particles dependent on Not1; this Not1-assemblysome function is conserved from yeast to human cells. |
Immunofluorescence, in situ hybridization, genetic depletion, ribosome pausing analysis |
Nature structural & molecular biology |
High |
30692646
|
| 2019 |
Deletion of the C-terminal CNOT1-binding domain (CNBD) of tristetraprolin (TTP) in mice produces a less severe inflammatory phenotype than complete TTP knockout; in cell-free assays, TTP lacking CNBD can still activate target mRNA deadenylation by purified CCR4-NOT complexes but less efficiently, demonstrating that TTP's CNBD interaction with CNOT1 quantitatively amplifies ARE-mRNA decay. |
Mouse knock-in model (CNBD deletion), in vitro deadenylation assay with recombinant proteins, mRNA stability assays in macrophages |
Molecular and cellular biology |
High |
31036567
|
| 2022 |
High-resolution structural analysis of the human CNOT1-CNOT10-CNOT11 N-terminal module shows two helical domains of CNOT1 sandwich CNOT10 and CNOT11; the conserved CNOT11 antenna domain is a protein-protein interaction platform, and GGNBP2 (tumor suppressor/spermatogenic factor) is identified as a conserved binding partner of this antenna. |
Cryo-EM/X-ray crystallography (multiple structural approaches), biochemical binding assays |
Cell reports |
High |
36586408
|
| 2022 |
TASOR interacts with CNOT1 (identified by yeast two-hybrid screen), and TASOR and CNOT1 synergistically repress HIV-1 LTR expression at a post-transcriptional level; TASOR facilitates association of RNA degradation proteins with RNA Polymerase II. |
Yeast two-hybrid, co-immunoprecipitation, gene expression assays, ChIP |
Nature communications |
Medium |
35013187
|
| 2022 |
The TTP CNOT1 Interaction Motif (CIM) recruits the CCR4-NOT deadenylase complex and promotes mRNA degradation cooperatively with TTP tryptophan residues that contact CNOT9; the CIM is phosphorylated by PKCα (not MK2) to disrupt CNOT1 interaction, revealing that multiple kinase pathways cooperatively regulate TTP-CNOT1 interaction. |
Mutagenesis of TTP CIM, co-immunoprecipitation, mRNA stability assays, phosphorylation mapping |
Molecular and cellular biology |
Medium |
35920669
|
| 2021 |
CNOT1 is required for normal circadian period; Cnot1 deficiency in mice lengthens circadian period; Per2 mRNA has a longer poly(A) tail and increased stability in Cnot1-deficient mice; CNOT1 is recruited to Per2 mRNA through BRF1 (ZFP36L1), which oscillates in antiphase with Per2 mRNA, linking CCR4-NOT deadenylation to circadian clock control. |
Conditional mouse knockout, circadian behavior assays, poly(A) tail length measurement, mRNA stability assay, Co-immunoprecipitation, siRNA knockdown |
RNA biology |
Medium |
35510877
|
| 2020 |
ZFP36L1 (BRF1) directly represses translation via ARE elements in a deadenylation-independent manner requiring direct interaction with CNOT1; this mechanism is distinct from TTP- or miRISC-mediated repression and does not require 4E-HP or GIGYF2. |
In vitro translation assay (mammalian cell-free system), mutagenesis of ZFP36L1-CNOT1 interaction interface, reporter assays |
Biochimie |
Medium |
32311426
|
| 2023 |
In yeast, depletion of Not1 and Not4 have opposing effects on mRNA solubility and ribosome codon-dwelling dynamics; Not1 depletion solubilizes mitochondrial mRNAs and affects codon-optimality-dependent ribosome pausing for soluble mRNAs, suggesting Not1 inversely regulates mRNA condensate association and co-translational events relative to Not4. |
Ribosome profiling, RNA fractionation (soluble/insoluble), genetic depletion, transcriptomics |
Genome biology |
Medium |
36803582
|
| 2025 |
CNOT1 interacts with 53BP1 (identified by high-content microscopy screens and orthogonal validation), impacts 53BP1 nuclear dynamics, and suppresses the 53BP1-p53-p21 signaling axis; CNOT1 depletion upregulates p53 target gene expression, induces apoptosis, and suppresses cytoplasmic aggregation of mutant p53, restoring nuclear localization and functionality of p53 mutants. |
High-content microscopy screen, Co-immunoprecipitation, CNOT1 depletion (siRNA/genetic), p53 reporter assays, FRAP/nuclear dynamics analysis |
Cell reports |
Medium |
40742806
|
| 2025 |
Auxin-induced acute depletion of CNOT1 in human cells causes decreased global mRNA decay and increased abundance of thousands of transcripts in a codon-optimality-correlated manner; CNOT4 depletion has opposite effects (accelerated mRNA decay) and does not disrupt CCR4-NOT complex integrity. |
Auxin-induced degron (AID) system, transcriptome-wide RNA-seq, mRNA decay assays, BioID proximity labeling |
The Journal of biological chemistry |
High |
41161383
|
| 2006 |
LET-711, the C. elegans NOT1 ortholog, is required for spindle positioning in early embryos; partial loss-of-function causes defects in centration and rotation of the first mitotic spindle; let-711 mutants have longer, more cold-stable microtubules and larger centrosomes with elevated ZYG-9 (XMAP215 homolog); simultaneous reduction of ZYG-9 and LET-711 rescues spindle positioning defects, placing LET-711 as an inhibitor of ZYG-9 expression for normal centrosome size and microtubule dynamics. |
RNAi/mutant analysis in C. elegans, live imaging, genetic epistasis (double mutant rescue), centrosome measurement |
Molecular biology of the cell |
High |
16971515
|
| 2021 |
The TTP Ser316 residue located at the C-terminal NOT1-binding domain is phosphorylated by RSK1 and MK2, and dephosphorylated by PP2A; a phosphomimetic S316D mutation weakens TTP interaction with CNOT1, dissociating TTP from the CCR4-NOT deadenylase complex and reducing TTP-mediated mRNA destabilization. |
Phospho-specific antibody, GST pulldown, Co-immunoprecipitation, mRNA stability assay, phosphomimetic mutagenesis, kinase inhibitor treatment |
Journal of inflammation |
Medium |
34090459
|
| 2025 |
HDX-MS analysis of CNOT1(800-999) HEAT-like repeat domain shows that point mutations E893A/Y900A and E893Q/Y900H reduce binding to TTP peptide by removing critical contact residues, not by perturbing overall domain structure, defining the molecular basis of TTP recognition by this CNOT1 domain. |
Hydrogen/deuterium exchange mass spectrometry (HDX-MS), mutagenesis, binding assays |
Biomolecules |
Medium |
40149939
|