Affinage

TMF1

TATA element modulatory factor · UniProt P82094

Length
1093 aa
Mass
122.8 kDa
Annotated
2026-04-28
27 papers in source corpus 12 papers cited in narrative 12 extracted findings

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

TMF1 is a multifunctional golgin that serves as a Rab6-dependent vesicle tether at the Golgi apparatus, directing retrograde transport from endosomes to the TGN and from Golgi to the ER, while also interacting with the COG tethering complex to bridge vesicle–target membrane apposition (PMID:15128430, PMID:17698061, PMID:23239882). Through a BC-box motif that recruits elongin C, TMF1 functions as an E3-ligase adaptor that targets Stat3 and NF-κB p65/RelA for ubiquitin-proteasomal degradation under stress conditions, thereby modulating inflammatory and angiogenic gene expression (PMID:15467733, PMID:19330832). TMF1 contains a microtubule-interacting (MIT) domain essential for Golgi anchoring and spatial orientation during spermiogenesis; TMF1-knockout male mice are sterile due to failed proacrosomal vesicle targeting and absent acrosome formation (PMID:20691678, PMID:26701263). TMF1 is also required for biogenesis of insulin-responsive GLUT4 vesicles, and its loss impairs GLUT4 trafficking to the plasma membrane and causes hyperglycemia (PMID:33475194).

Mechanistic history

Synthesis pass · year-by-year structured walk · 9 steps
  1. 1999 High

    The initial characterization of TMF1 revealed an unexpected nuclear function: it directly binds the androgen receptor N-terminus and coactivates AR-mediated transcription, establishing TMF1 as a transcriptional cofactor.

    Evidence Far-Western, Co-IP, pull-down, mammalian two-hybrid, and reporter assays in prostate cancer cells

    PMID:10428808

    Open questions at the time
    • Physiological relevance of AR coactivation in vivo not tested
    • Whether TMF1 coactivation extends to other nuclear receptors unknown
    • Mechanism by which TMF1 shuttles between Golgi and nucleus not defined
  2. 2002 Medium

    Discovery that TMF1 physically associates with the ATPase subunits of SWI/SNF chromatin remodeling complexes (hbrm, BRG-1) suggested a mechanism for its nuclear transcriptional activity, while also confirming that different TMF1 isoforms partition between Golgi and nucleus.

    Evidence In vitro binding assays, Co-IP, immunofluorescence, and Western blot fractionation

    PMID:12044884

    Open questions at the time
    • Functional consequence of SWI/SNF interaction on chromatin remodeling not demonstrated
    • Whether SWI/SNF interaction is linked to AR coactivation untested
    • Isoform-specific regulation not characterized
  3. 2004 High

    Two pivotal discoveries reframed TMF1's primary identity: it was shown to be a Golgi golgin that binds all three Rab6 isoforms via a coiled-coil domain and is needed for Golgi integrity, while independently it was found to contain a BC-box motif that recruits elongin C to direct ubiquitin-proteasomal degradation of Stat3.

    Evidence Yeast two-hybrid, reciprocal Co-IP with Rab6, RNAi-induced Golgi dispersal (Rab6); BC-box mutagenesis, ubiquitination assay, proteasome inhibitor rescue (Stat3 degradation)

    PMID:15128430 PMID:15467733

    Open questions at the time
    • How TMF1 coordinates its Golgi-tethering and E3-adaptor functions is unknown
    • Structural basis of Rab6 binding not resolved
    • Whether Stat3 degradation occurs at the Golgi or in the cytosol undefined
  4. 2007 High

    High-resolution imaging and functional trafficking assays established that TMF1 localizes to budding cisternae tips and is required for two specific Rab6-dependent retrograde pathways — endosome-to-TGN transport of Shiga toxin and Golgi-to-ER retention of GalNAc-T2 — providing the first direct evidence that TMF1 acts as a vesicle tether.

    Evidence RNAi, immunoelectron microscopy, Shiga toxin trafficking assay, chimeric domain-swap analysis

    PMID:17698061

    Open questions at the time
    • Whether TMF1 tethers other retrograde cargo beyond Shiga toxin and GalNAc-T2 unknown
    • SNARE partners mediating TMF1-dependent fusion not identified
    • Selectivity mechanism for GalNAc-T2 but not GalT not fully explained
  5. 2009 Medium

    Extending its E3-adaptor role, TMF1 was shown to ubiquitinate NF-κB p65/RelA under metabolic stress, downregulating proangiogenic genes and attenuating xenograft tumor growth, broadening the substrate repertoire of TMF1-mediated degradation.

    Evidence Ectopic expression in PC3 cells, xenograft tumor model, ubiquitination assay, RNA profiling

    PMID:19330832

    Open questions at the time
    • Whether TMF1-mediated p65 degradation is relevant beyond the xenograft setting unknown
    • Specificity determinants distinguishing Stat3 vs. p65 as substrates not mapped
    • Upstream signals activating TMF1's E3-adaptor function undefined
  6. 2010 High

    Generation of TMF1-knockout mice revealed male-specific sterility caused by failure of proacrosomal vesicle homing, absent acrosome formation, and defective cytoplasm removal, establishing TMF1 as essential for spermiogenesis in vivo.

    Evidence TMF KO mouse, histology, electron microscopy, fertility testing

    PMID:20691678

    Open questions at the time
    • Molecular cargo of proacrosomal vesicles requiring TMF1 not identified
    • Whether the spermiogenesis defect reflects Rab6-tethering loss, microtubule anchoring loss, or both not dissected
    • Rescue experiments not performed
  7. 2012 Medium

    Multiple studies refined TMF1's interaction network and physiological roles: the COG complex was shown to bind both ends of TMF1, supporting a model where TMF1 bridges vesicle–target membranes; TMF1 loss in goblet cells altered MUC2 mucin secretion via elevated NF-κB/p65; and TMF1 KO testes showed Leydig cell hyperproliferation with reduced testosterone, linking TMF1 to endocrine homeostasis.

    Evidence Co-IP and yeast two-hybrid for COG interaction; DSS colitis model in KO mice for mucin phenotype; hormone measurements and histology in KO mice for Leydig cell phenotype

    PMID:22553199 PMID:23000399 PMID:23239882

    Open questions at the time
    • Whether COG–TMF1 interaction is required for the retrograde pathways defined in 2007 not tested
    • Mechanism linking TMF1 to Leydig cell proliferation unclear
    • Direct vesicle fusion reconstitution with TMF1 not achieved
  8. 2015 High

    Identification of a microtubule-interacting (MIT) domain in TMF1 explained how it anchors the Golgi near the nucleus during spermiogenesis; loss of MIT-mediated microtubule binding caused aberrant Golgi orientation, failed proacrosomal vesicle targeting, and impaired acroplaxome/chromatoid body formation.

    Evidence TMF KO mouse, immunofluorescence, electron microscopy, MIT domain mutation/deletion, microtubule co-sedimentation

    PMID:26701263

    Open questions at the time
    • Crystal structure of the MIT domain not determined
    • Whether the MIT domain functions outside spermiogenesis not tested
    • Regulatory mechanisms controlling TMF1 translocation from cis- to trans-Golgi unknown
  9. 2021 High

    TMF1 was found to be insulin-upregulated and required for formation of insulin-responsive GLUT4 vesicles; its absence trapped GLUT4 in perinuclear compartments, reduced glucose uptake, and caused hyperglycemia, expanding TMF1's vesicle-sorting role to metabolic regulation.

    Evidence TMF1 KO myoblasts and mice, GLUT4 vesicle trafficking assay, glucose uptake assay, blood glucose measurement

    PMID:33475194

    Open questions at the time
    • Whether TMF1 acts via Rab6 to form GLUT4 vesicles not determined
    • Sorting signals on GLUT4 recognized by TMF1 not identified
    • Contribution of TMF1 loss to systemic insulin resistance beyond glucose uptake not evaluated

Open questions

Synthesis pass · forward-looking unresolved questions
  • A unified structural and regulatory framework explaining how TMF1 coordinates its distinct roles — vesicle tethering, E3-ligase adaptor activity, microtubule anchoring, and transcriptional coactivation — remains unresolved, as does whether these functions are mutually exclusive or context-dependent.
  • No high-resolution structure of TMF1 or its complexes
  • No reconstituted vesicle tethering/fusion assay with purified TMF1
  • Post-translational modifications regulating TMF1 functional switching unknown

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0060090 molecular adaptor activity 2 GO:0098772 molecular function regulator activity 2 GO:0008092 cytoskeletal protein binding 1 GO:0140110 transcription regulator activity 1
Localization
GO:0005794 Golgi apparatus 4 GO:0031410 cytoplasmic vesicle 2 GO:0005634 nucleus 1 GO:0005856 cytoskeleton 1
Pathway
R-HSA-5653656 Vesicle-mediated transport 4 R-HSA-1474165 Reproduction 2 R-HSA-162582 Signal Transduction 2 R-HSA-392499 Metabolism of proteins 2 R-HSA-382551 Transport of small molecules 1
Complex memberships
Elongin BC-CUL5 E3 ligase complex

Evidence

Reading pass · 12 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
1999 TMF1/ARA160 directly interacts with the androgen receptor (AR) N-terminal domain and functions as an androgen-enhanced coactivator for AR-mediated transactivation in prostate cancer cells; interaction is enhanced by androgen and TMF1 cooperates with the AR C-terminal coactivator ARA70. Far-Western blotting, co-immunoprecipitation, affinity gel pull-down, mammalian two-hybrid assay, transient transfection reporter assay The Journal of biological chemistry High 10428808
2002 TMF1/ARA160 physically associates with the ATPase subunits of human SWI/SNF chromatin remodeling complexes (hbrm/hSNF2α and BRG-1/hSNF2β) via their conserved N-terminal regions and the C-terminal region of TMF; different TMF isoforms differentially localize to the Golgi apparatus and the nucleus. In vitro binding assay, co-immunoprecipitation, immunofluorescence, Western blot fractionation FEBS letters Medium 12044884
2004 TMF1 is a Golgi-localized golgin that binds all three isoforms of the GTPase Rab6 (mammalian homologue of yeast Ypt6) via a conserved ~100-residue coiled-coil motif; depletion by RNAi causes dispersal of Golgi membranes, indicating a role in Golgi organization. Yeast two-hybrid (Sgm1/Ypt6 interaction), co-immunoprecipitation (Rab6 isoforms), RNA interference knockdown, immunofluorescence microscopy BMC cell biology High 15128430
2004 TMF1/ARA160 contains a BC-box motif that mediates binding to elongin C; through this E3-ligase adaptor function, TMF1 directs ubiquitination and proteasomal degradation of Stat3 (but not Stat1) under serum-starvation conditions; BC-box deletion abolishes this activity. Co-immunoprecipitation, sequence motif analysis, ectopic overexpression with ubiquitination assay, proteasome inhibitor rescue, BC-box deletion mutagenesis Oncogene High 15467733
2007 TMF1 is concentrated at budding cisternae tips of the Golgi (shown by immunoelectron microscopy) and is required for two Rab6-dependent retrograde transport processes: (1) endosome-to-TGN transport of Shiga toxin, and (2) Golgi-to-ER retention of GalNAc-T2 (but not GalT); the cytoplasmic region of GalNAc-T2 mediates TMF-dependent Golgi retention. RNAi knockdown, high-resolution immunofluorescence, immunoelectron microscopy, Shiga toxin trafficking assay, chimeric protein domain-swap analysis Experimental cell research High 17698061
2009 Under metabolic stress, TMF1 directs ubiquitination and proteasomal degradation of the NF-κB subunit p65/RelA, thereby downregulating proangiogenic genes (IL-8, IL-1β) and attenuating tumor xenograft growth. Ectopic expression in PC3 cells, xenograft tumor model, ubiquitination assay, RNA expression profiling, immunohistochemistry International journal of cancer Medium 19330832
2010 TMF1 knockout male mice are sterile due to failure of proacrosomal vesicle homing to the perinuclear surface (acrosome absent), improper cytoplasm removal, misshapen sperm heads, and tail coiling; females are fertile and mice are otherwise healthy, establishing TMF1 as essential for spermiogenesis. TMF knockout mouse generation, histology, electron microscopy, fertility testing Developmental biology High 20691678
2012 The COG tethering complex binds both ends of TMF1 and interacts with two Rab GTPases; the central portion of TMF1 can bind Golgi membranes stripped of COPI coat, suggesting TMF1 bridges vesicle–target membrane apposition prior to fusion. Co-immunoprecipitation, yeast two-hybrid, in vitro binding assays, domain mapping The Journal of biological chemistry Medium 23239882
2012 Loss of TMF1 in colonic goblet cells leads to altered MUC2 mucin secretion producing highly oligomerized gel-forming mucus refractory to bacterial colonization; TMF1 absence elevates p65/NF-κB and muc2 transcription in intestinal epithelial cells. TMF knockout mouse, DSS colitis model, gene expression analysis, mucus morphology assessment, bacterial colonization assay The Journal of biological chemistry Medium 22553199
2012 TMF1 knockout leads to Leydig cell hyperproliferation, elevated LH, and significantly reduced serum testosterone, establishing a role for TMF1 in controlling testosterone production in the testis. TMF knockout mouse, hormone serum measurements (LH, testosterone), histological analysis, testosterone rescue experiment Molecular and cellular endocrinology Medium 23000399
2015 During spermiogenesis, TMF1 dynamically translocates from cis-Golgi to trans-Golgi network to emerging vesicle surfaces; TMF1 contains a microtubule-interacting (MIT) domain that mediates association with microtubules, which is required for stable Golgi anchoring; loss of TMF1 causes aberrant Golgi orientation away from the nucleus, failure of proacrosomal vesicle targeting, and impaired acroplaxome and chromatoid body formation. TMF knockout mouse, immunofluorescence live/fixed imaging, electron microscopy, in-silico domain prediction, MIT domain mutation/deletion analysis, microtubule co-sedimentation PloS one High 26701263
2021 TMF1 is upregulated by insulin in myoblasts and is required for formation of insulin-responsive GLUT4-containing vesicles; absence of TMF1 retains GLUT4 in perinuclear compartments, impairs GLUT4 trafficking to the plasma membrane, reduces glucose uptake, and causes hyperglycemia in TMF1-/- mice. TMF1 knockout myoblasts and mice, GLUT4 vesicle trafficking assay, glucose uptake assay, blood glucose measurement, immunofluorescence localization FASEB journal High 33475194

Source papers

Stage 0 corpus · 27 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
1999 Isolation and characterization of ARA160 as the first androgen receptor N-terminal-associated coactivator in human prostate cells. The Journal of biological chemistry 118 10428808
2004 TMF is a golgin that binds Rab6 and influences Golgi morphology. BMC cell biology 85 15128430
2012 Molecular insights into vesicle tethering at the Golgi by the conserved oligomeric Golgi (COG) complex and the golgin TATA element modulatory factor (TMF). The Journal of biological chemistry 71 23239882
2007 Functional involvement of TMF/ARA160 in Rab6-dependent retrograde membrane traffic. Experimental cell research 57 17698061
2010 TMF/ARA160: A key regulator of sperm development. Developmental biology 55 20691678
2004 TMF/ARA160 is a BC-box-containing protein that mediates the degradation of Stat3. Oncogene 47 15467733
2014 Reprogrammed and transmissible intestinal microbiota confer diminished susceptibility to induced colitis in TMF-/- mice. Proceedings of the National Academy of Sciences of the United States of America 44 24639530
2016 Production of enzymes by a newly isolated Bacillus sp. TMF-1 in solid state fermentation on agricultural by-products: The evaluation of substrate pretreatment methods. Bioresource technology 39 28063362
2002 A putative nuclear receptor coactivator (TMF/ARA160) associates with hbrm/hSNF2 alpha and BRG-1/hSNF2 beta and localizes in the Golgi apparatus. FEBS letters 31 12044884
2019 TMF inhibits miR-29a/Wnt/β-catenin signaling through upregulating Foxo3a activity in osteoarthritis chondrocytes. Drug design, development and therapy 24 31354246
2019 The Anti-Proliferative Activity of the Hybrid TMS-TMF-4f Compound Against Human Cervical Cancer Involves Apoptosis Mediated by STAT3 Inactivation. Cancers 21 31816985
2015 TMF/ARA160 Governs the Dynamic Spatial Orientation of the Golgi Apparatus during Sperm Development. PloS one 20 26701263
2009 TMF/ARA160 downregulates proangiogenic genes and attenuates the progression of PC3 xenografts. International journal of cancer 19 19330832
2012 Loss of TMF/ARA160 protein renders colonic mucus refractory to bacterial colonization and diminishes intestinal susceptibility to acute colitis. The Journal of biological chemistry 15 22553199
2012 Testosterone deficiency accompanied by testicular and epididymal abnormalities in TMF(-/-) mice. Molecular and cellular endocrinology 15 23000399
2017 TMF protects chondrocytes from ER stress-induced apoptosis by down-regulating GSK-3β. Biomedicine & pharmacotherapy = Biomedecine & pharmacotherapie 13 28320093
2024 TMF inhibits extracellular matrix degradation by regulating the C/EBPβ/ADAMTS5 signaling pathway in osteoarthritis. Biomedicine & pharmacotherapy = Biomedecine & pharmacotherapie 8 38554527
2021 TMF1 is upregulated by insulin and is required for a sustained glucose homeostasis. FASEB journal : official publication of the Federation of American Societies for Experimental Biology 6 33475194
2025 TMF Attenuates Cognitive Impairment and Neuroinflammation by Inhibiting the MAPK/NF-κB Pathway in Alzheimer's Disease: A Multi-Omics Analysis. Marine drugs 5 39997198
2020 TMF, a natural dihydroflavonoid isolated from Scutellaria javanica Jungh, stimulates anticancer activity of s180 cancer-bearing mice, induces apoptosis, inhibits invasion and migration on HepG-2 cells. Journal of ethnopharmacology 5 32738393
2003 Characterization of a new bradykinin-potentiating peptide (TmF) from Trimeresurus mucrosquamatus. Sheng wu hua xue yu sheng wu wu li xue bao Acta biochimica et biophysica Sinica 5 12883631
2023 Resequencing of the TMF-1 (TATA Element Modulatory Factor) regulated protein (TRNP1) gene in domestic and wild canids. Canine medicine and genetics 4 37968761
2024 TMF suppresses chondrocyte hypertrophy in osteoarthritic cartilage by mediating the FOXO3a/BMPER pathway. Experimental and therapeutic medicine 3 38800044
2023 [Clinical efficacy analysis of TMF for the treatment of hyperviremia HBeAg-positive chronic hepatitis B patients with incomplete response to first-line oral antiviral nucleos(t)ide analogues]. Zhonghua gan zang bing za zhi = Zhonghua ganzangbing zazhi = Chinese journal of hepatology 3 37137850
2022 Computational analysis and in vitro evaluation of TMF 104, for its antioxidant, antimicrobial, and anticancer efficacies. Biotechnology and applied biochemistry 2 35324037
2024 [Switching to TMF rescue therapy in patients developing low-level viremia with ETV or TAF treatment]. Zhonghua gan zang bing za zhi = Zhonghua ganzangbing zazhi = Chinese journal of hepatology 1 39971496
2016 Objective Evaluation Tool for Texture-Modified Food (OET-TMF): Development of the Tool and Validation. Dysphagia 1 26796742