Affinage

SYTL4

Synaptotagmin-like protein 4 · UniProt Q96C24

Length
671 aa
Mass
76.0 kDa
Annotated
2026-06-10
14 papers in source corpus 10 papers cited in narrative 10 extracted findings
Cross-family judge vs UniProt: Affinage preferred faithfulness: 5/5 claims corpus-supported (100%)

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

SYTL4 (Slp4-a/granuphilin) is a Rab27A effector that controls the docking and Ca²⁺-triggered fusion of dense-core secretory granules and Weibel-Palade bodies (WPBs) by bridging vesicular Rab GTPases to the plasma-membrane SNARE-priming machinery (PMID:12176990, PMID:16481396). Through its N-terminal Slp homology domain it engages Rab27A in both nucleotide states, using distinct sub-domains (the SHD2 TGDWFY motif for GDP-bound Rab27A and SHD1 for the GTP-bound form), with the GDP-bound interaction being the dominant route by which it inhibits exocytosis (PMID:12590134). Its central linker domain directly binds the Munc18-1·syntaxin-1a complex—and Munc18-2·syntaxin-2/3 in exocrine acinar cells—to dock granules at the plasma membrane while ultimately suppressing KCl-evoked secretion, since increasing docked-vesicle number is uncoupled from fusion and the linker is required for the inhibitory effect (PMID:16186111, PMID:16481396). In endothelial cells SYTL4 instead acts as a positive regulator of hormone-evoked WPB exocytosis and von Willebrand factor release, recruiting STXBP1 together with syntaxin-2/3, an activity opposed by MyRIP at the same Rab27A docking site (PMID:22898601, PMID:24700782). Independent of its secretory role, SYTL4 directly binds microtubules through its linker–C2A region and inhibits microtubule polymerization, a function that promotes paclitaxel resistance in triple-negative breast cancer (PMID:33042263).

Mechanistic history

Synthesis pass · year-by-year structured walk · 10 steps
  1. 2002 High

    Established Slp4-a as a Rab27A-specific effector on dense-core vesicles and a negative regulator of exocytosis, defining its first molecular partner and functional output.

    Evidence Co-IP, subcellular fractionation, and NPY secretion assay with a Rab27A-binding-deficient mutant in PC12 cells

    PMID:12176990

    Open questions at the time
    • Did not resolve which downstream plasma-membrane machinery executes the inhibition
    • Rab8 interaction left functionally uncharacterized
  2. 2003 High

    Defined the dual nucleotide-state recognition of Rab27A by distinct SHD sub-domains and identified GDP-bound binding as the mechanism of secretion inhibition, while linking Slp4-a to Munc18-1.

    Evidence Domain deletion/point mutagenesis, immunoprecipitation, and NPY secretion assays in PC12 cells

    PMID:12590134

    Open questions at the time
    • Structural basis of simultaneous GDP/GTP-form binding not resolved
    • Functional consequence of Munc18-1 binding not yet established at this stage
  3. 2005 High

    Extended the mechanism to exocrine cells by showing the linker domain engages syntaxin-2/3 via Munc18-2 and is required for stimulated secretion, establishing tissue-specific SNARE partner usage.

    Evidence Co-IP, deletion mapping, endogenous complex detection, and antibody-inhibition amylase release in permeabilized parotid acinar cells

    PMID:16186111

    Open questions at the time
    • Whether syntaxin-2/3 engagement is activating or inhibitory in this context not fully disentangled
    • Direct versus Munc18-bridged contact not separated
  4. 2006 High

    Resolved the bridging model—linker-domain Munc18-1 binding drives vesicle docking yet exocytosis is still inhibited—demonstrating that docking and fusion are mechanistically uncoupled by Slp4-a.

    Evidence Chimeric Slp4-a/Slp5 domain swaps, co-IP, morphological docking assay, and NPY secretion in PC12 cells

    PMID:16481396

    Open questions at the time
    • Molecular step at which fusion is blocked downstream of docking not defined
    • Whether the GDP-Rab27A interaction and Munc18-1 bridging act independently unclear
  5. 2006 High

    Placed granuphilin/Slp4 expression under transcriptional and microRNA control, showing the mir-9→Onecut-2→granuphilin axis tunes insulin-secreting cell exocytosis.

    Evidence EMSA, ChIP, RNAi, and secretion assays in insulin-secreting cells

    PMID:16831872

    Open questions at the time
    • Did not test SYTL4 protein-level mechanism, only its regulation
    • Direct effect of granuphilin dose on fusion not measured here
  6. 2009 Medium

    Distinguished Slp4-a from MyRIP by showing it is stably retained on apical membrane and granules without stimulus-evoked redistribution or degradation, indicating a constitutive scaffolding role.

    Evidence Subcellular fractionation and immunoblotting after isoproterenol stimulation in rat parotid acinar cells

    PMID:19185850

    Open questions at the time
    • Single-lab fractionation without live imaging
    • Functional meaning of stable localization not directly tested
  7. 2012 High

    Revealed a context-dependent reversal of polarity—in endothelial WPBs Slp4-a is a positive regulator of exocytosis, with release probability set by competition with MyRIP for Rab27A.

    Evidence siRNA knockdown, EGFP-Slp4-a overexpression, VWF secretion, and localization in endothelial cells

    PMID:22898601

    Open questions at the time
    • Molecular basis for opposite directionality versus PC12 cells not defined
    • Stoichiometry of Slp4-a vs MyRIP occupancy not quantified in vivo
  8. 2014 High

    Identified STXBP1 and syntaxin-2/3 as endogenous SYTL4 partners by unbiased proteomics and linked the Rab27A–Slp4-a–STXBP1 complex to VWF secretion, including a human STXBP1-haploinsufficient phenotype.

    Evidence Proteomic screen, co-IP, siRNA, and patient-derived blood outgrowth endothelial cells with VWF secretion readout

    PMID:24700782

    Open questions at the time
    • Whether STXBP1 recruitment is direct or via syntaxin not resolved
    • Mechanism converting docking into productive fusion still incomplete
  9. 2020 Medium

    Uncovered a secretion-independent function: SYTL4 directly binds and destabilizes microtubules via its linker–C2A region, linking it to paclitaxel resistance in TNBC.

    Evidence Colocalization, microtubule pulldown, in vitro polymerization assay, siRNA with dynamics readout, mouse and organoid models

    PMID:33042263

    Open questions at the time
    • Single-lab, unreplicated finding
    • Relationship between microtubule and secretory functions not integrated
    • No structural detail of the microtubule-binding interface
  10. 2025 Low

    Implicated SYTL4-mediated exocytosis in CXCL8 secretion in pancreatic cancer downstream of glutamine metabolism and mTOR/NF-κB signaling.

    Evidence Knockdown, CXCL8 secretion assay, and in vivo tumor models in pancreatic cancer cells

    PMID:41444422

    Open questions at the time
    • Limited mechanistic detail on how SYTL4 specifically mediates CXCL8 exocytosis
    • Single lab, not independently confirmed
    • Rab27A/SNARE dependence in this context not tested

Open questions

Synthesis pass · forward-looking unresolved questions
  • How SYTL4 switches between negative regulation (dense-core granules) and positive regulation (WPBs), and how its microtubule-destabilizing activity relates to its secretory scaffolding role, remain unresolved.
  • No structure of the Rab27A–Slp4-a–Munc18/syntaxin assembly
  • Determinants of cell-type-specific directionality unknown
  • Whether microtubule and exocytic functions are mutually exclusive untested

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0060090 molecular adaptor activity 3 GO:0098772 molecular function regulator activity 3 GO:0008092 cytoskeletal protein binding 1
Localization
GO:0005886 plasma membrane 2 GO:0031410 cytoplasmic vesicle 2 GO:0005856 cytoskeleton 1
Pathway
R-HSA-5653656 Vesicle-mediated transport 4 R-HSA-109582 Hemostasis 2
Complex memberships
Rab27A-Slp4-a-Munc18-1-syntaxin-1a docking complexRab27A-Slp4-a-STXBP1-syntaxin-2/3 complex

Evidence

Reading pass · 10 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2002 Slp4-a forms complexes with Rab27A and Rab8 (but not Rab3A) on dense-core vesicles in PC12 cells, and expression of Slp4-a (but not a Rab27A-binding-deficient mutant) inhibits KCl-dependent NPY secretion, establishing Slp4-a as a negative regulator of dense-core vesicle exocytosis that acts specifically through Rab27A. Immunocytochemistry, subcellular fractionation, co-immunoprecipitation in intact cells, NPY secretion assay with Rab27A-binding-deficient mutant The Journal of biological chemistry High 12176990
2003 Slp4-a uniquely binds both the GDP-bound (T23N) and GTP-bound (Q78L) forms of Rab27A via distinct domains (SHD2 TGDWFY sequence for GDP-form; SHD1 for GTP-form), and interaction with GDP-bound Rab27A is the primary mechanism by which Slp4-a inhibits dense-core vesicle exocytosis in PC12 cells. Munc18-1 directly interacts with the C-terminal domain of Slp4-a independently of Rab27A. Deletion and point mutation analyses, immunoprecipitation, cotransfection assays, NPY secretion assay The Journal of biological chemistry High 12590134
2005 The linker domain of Slp4-a (residues 144–354) interacts with syntaxin-2/3 in a Munc18-2-dependent manner in parotid acinar cells, and anti-Slp4-a linker domain antibody introduced into permeabilized parotid acinar cells attenuates isoproterenol-stimulated amylase release, demonstrating that Slp4-a modulates exocytosis through syntaxin-2/3 interaction in exocrine cells. Co-immunoprecipitation in COS-7 cells, deletion analysis, endogenous complex detection in rat parotid gland, antibody inhibition in streptolysin O-permeabilized acinar cells The Journal of biological chemistry High 16186111
2006 The linker domain of Slp4-a directly binds Munc18-1, and this interaction promotes docking of dense-core vesicles to the plasma membrane in PC12 cells. Despite increasing docked vesicle number, Slp4-a strongly inhibits KCl-induced exocytosis, and this inhibitory effect is abolished when the Slp4-a linker domain is replaced by the corresponding Slp5 linker (which cannot bind Munc18-1). Slp4-a thus simultaneously bridges Rab27A on dense-core vesicles and the Munc18-1·syntaxin-1a complex at the plasma membrane. Deletion and chimeric domain analyses, co-immunoprecipitation, morphological docking assay (electron microscopy or imaging implied), NPY secretion assay with domain-swap mutants in PC12 cells Molecular biology of the cell High 16481396
2006 MicroRNA-9 (mir-9) overexpression in insulin-secreting cells reduces glucose- and KCl-evoked exocytosis by decreasing expression of the transcription factor Onecut-2, which in turn elevates Granuphilin/Slp4 levels. Onecut-2 binds the granuphilin promoter and represses its transcription; siRNA silencing of Onecut-2 increases Granuphilin expression and mimics the inhibitory effect of mir-9 on secretion. Electrophoretic mobility shift assay, chromatin immunoprecipitation, transfection/overexpression, RNA interference, secretion assay The Journal of biological chemistry High 16831872
2012 Slp4-a (granuphilin) is an endogenous component of Weibel-Palade bodies (WPBs) in endothelial cells, localizes to WPBs in a Rab27A/Rab3B/Rab3D-dependent manner, and acts as a positive regulator of hormone-evoked WPB exocytosis (VWF secretion). siRNA knockdown of Slp4-a reduces WPB exocytosis, whereas overexpression of EGFP-Slp4-a increases it, in contrast to MyRIP which is a negative regulator. The probability of WPB release is proposed to depend on the fractional occupancy of WPB-Rab27A by Slp4-a versus MyRIP. siRNA knockdown, EGFP-fusion overexpression, VWF secretion assay, immunofluorescence localization, subcellular fractionation Blood High 22898601
2014 STXBP1 (syntaxin-binding protein 1) and syntaxins-2 and -3 are endogenous binding partners of Slp4-a in endothelial cells identified by unbiased proteomics. STXBP1 interacts with syntaxin-2 and -3 but not syntaxin-4. siRNA silencing of STXBP1 impairs histamine- and forskolin-induced VWF secretion. STXBP1-haploinsufficient patient-derived endothelial cells show impaired stimulus-evoked VWF secretion despite normal WPB morphology, indicating that the Rab27A–Slp4-a–STXBP1 complex promotes WPB exocytosis. Unbiased proteomic screen, co-immunoprecipitation, siRNA knockdown, patient-derived blood outgrowth endothelial cells (EIEE4 mutation), VWF secretion assay Blood High 24700782
2009 In rat parotid acinar cells under resting conditions, Slp4-a is present on both apical plasma membrane and secretory granule fractions. Following isoproterenol stimulation, intracellular localization and expression levels of Slp4-a remain unchanged, in contrast to Slac2-c/MyRIP which redistributes and is degraded. Subcellular fractionation, immunoblotting of parotid acinar cells following isoproterenol stimulation Archives of oral biology Medium 19185850
2020 SYTL4 colocalizes with microtubules in TNBC cells and interacts with microtubules through its middle region (linker and C2A domain). SYTL4 directly binds microtubules and inhibits in vitro microtubule polymerization; downregulation of SYTL4 stabilizes the microtubule network and slows microtubule growth rate, conferring paclitaxel sensitivity. Colocalization imaging, biochemical pulldown/interaction assay with microtubules, in vitro microtubule polymerization assay, siRNA knockdown with microtubule dynamics readout, mouse model and patient-derived organoids Theranostics Medium 33042263
2025 SYTL4-mediated exocytosis is required for CXC motif chemokine ligand 8 (CXCL8) secretion in pancreatic cancer cells; SLC6A14-mediated glutamine metabolism drives this process via mTOR/NF-κB signaling, and SYTL4 knockdown reduces CXCL8 secretion and its paracrine activation of cancer-associated fibroblasts. Knockdown experiments, secretion assay for CXCL8, in vivo tumor models Experimental & molecular medicine Low 41444422

Source papers

Stage 0 corpus · 14 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2006 MicroRNA-9 controls the expression of Granuphilin/Slp4 and the secretory response of insulin-producing cells. The Journal of biological chemistry 288 16831872
2012 The interplay between the Rab27A effectors Slp4-a and MyRIP controls hormone-evoked Weibel-Palade body exocytosis. Blood 83 22898601
2002 Slp4-a/granuphilin-a regulates dense-core vesicle exocytosis in PC12 cells. The Journal of biological chemistry 71 12176990
2006 The Slp4-a linker domain controls exocytosis through interaction with Munc18-1.syntaxin-1a complex. Molecular biology of the cell 59 16481396
2003 Slp4-a/granuphilin-a inhibits dense-core vesicle exocytosis through interaction with the GDP-bound form of Rab27A in PC12 cells. The Journal of biological chemistry 58 12590134
2014 STXBP1 promotes Weibel-Palade body exocytosis through its interaction with the Rab27A effector Slp4-a. Blood 49 24700782
2005 Slp4-a/granuphilin-a interacts with syntaxin-2/3 in a Munc18-2-dependent manner. The Journal of biological chemistry 44 16186111
2020 SYTL4 downregulates microtubule stability and confers paclitaxel resistance in triple-negative breast cancer. Theranostics 42 33042263
2005 Analysis of the role of Rab27 effector Slp4-a/Granuphilin-a in dense-core vesicle exocytosis. Methods in enzymology 39 16473610
2019 High Functioning Autism with Missense Mutations in Synaptotagmin-Like Protein 4 (SYTL4) and Transmembrane Protein 187 (TMEM187) Genes: SYTL4- Protein Modeling, Protein-Protein Interaction, Expression Profiling and MicroRNA Studies. International journal of molecular sciences 17 31323913
2009 Redistribution of Rab27-specific effector Slac2-c, but not Slp4-a, after isoproterenol-stimulation in rat parotid acinar cells. Archives of oral biology 8 19185850
2025 SLC6A14-mediated glutamine promotes SYTL4-CXCL8 axis activation to drive gemcitabine resistance and immune evasion in pancreatic cancer. Experimental & molecular medicine 5 41444422
2023 Effect of Slp4-a on Membrane Bending During Prefusion of Vesicles in Blood-Brain Barrier. Journal of biomechanical engineering 1 35838328
2026 SYTL4 May Serve as a New Predictive Biomarker for Survival and Trastuzumab Treatment Responsiveness in HER2-Positive Breast Cancer. International journal of molecular sciences 0 42196512

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