| 1998 |
SUMO-1 conjugates IκBα primarily at K21 (the same lysine used for ubiquitin modification), preventing ubiquitination of IκBα and thus protecting it from proteasome-mediated degradation, thereby inhibiting NF-κB activation. In the presence of E1 activating enzyme, Ubc9 (E2) conjugates SUMO-1 to IκBα; SUMO-1 modification is inhibited by phosphorylation whereas ubiquitination requires it. |
In vitro SUMOylation assay with E1 and Ubc9; site-directed mutagenesis (K21); overexpression in cells; NF-κB reporter assays |
Molecular cell |
High |
9734360
|
| 1998 |
SUMO-1 modification of RanGAP1 at K526 (via C-terminal cleavage exposing G97 as the attachment point) directs RanGAP1 to the nuclear envelope/nuclear pore complex by creating or exposing a binding site for the nucleoporin Nup358/RanBP2. Unmodified RanGAP1 is cytoplasmic; SUMO-1-modified RanGAP1 stably associates with the NE through many import cycles. |
Peptide mapping, mass spectrometry, site-directed mutagenesis (K526R), in vitro import assays, cell fractionation |
The Journal of cell biology |
High |
9442102 9456312
|
| 1998 |
Ubc9 (Xenopus p18Ubc9) functions as the E2 conjugating enzyme specifically for SUMO-1 but not for ubiquitin, and physically interacts with RanBP2 (via its internal repeat domain, which is itself a SUMO-1 substrate in Xenopus egg extracts). SUMO-1 conjugation promotes RanGAP1 interaction with RanBP2. |
In vitro E2 activity assay distinguishing ubiquitin vs SUMO-1; co-immunoprecipitation; Xenopus egg extract SUMOylation assay |
Current biology |
High |
9427648
|
| 1999 |
In vitro SUMO-1 modification requires only two enzymatic steps (E1 activating enzyme Sua1p/hUba2 heterodimer + E2 Ubc9), unlike ubiquitin which typically requires three. hUba2 forms a thioester bond with SUMO-1; the Sua1p/Uba2p complex has E1 activity sufficient to allow Ubc9-dependent modification of RanGAP1. |
In vitro reconstitution with recombinant E1 (Sua1p/hUba2p) and E2 (Ubc9); biochemical thioester assay |
Biochemical and biophysical research communications |
High |
9920803
|
| 1999 |
p53 is modified by SUMO-1 at a single site (K386) in vitro (requiring only SUMO-1, E1, and Ubc9) and in vivo. SUMO-1 and ubiquitin modification do not compete for the same lysine in p53. Overexpression of SUMO-1 activates p53 transcriptional activity in a K386-dependent manner. |
In vitro SUMOylation assay; site-directed mutagenesis (K386R); transactivation reporter assay in cells; immunoprecipitation |
The EMBO journal |
High |
10562557 10562558 10788439
|
| 2000 |
SUMO-1 conjugation requires a transferable PsiKXE consensus motif (where Psi is a large hydrophobic residue). Short peptide sequences from p53 and IκBα containing this motif confer SUMO-1 modification on a carrier protein in vitro, but in vivo modification additionally requires nuclear targeting (nuclear localization signal). |
Domain-swap/peptide-transfer in vitro and in vivo SUMOylation assays; mutagenesis; nuclear localization signal addition/removal experiments |
The Journal of biological chemistry |
High |
11124955
|
| 1997 |
PML and Sp100, components of nuclear dots/PML nuclear bodies, are covalently modified by PIC1/SUMO-1 in vivo (but not when synthesized in vitro). SUMO-1-modified Sp100 isoforms are exclusively nuclear, whereas unmodified Sp100 is also cytoplasmic, indicating that SUMO-1 modification correlates with nuclear retention of Sp100. |
Immunoblotting with SUMO-1-specific antibody; cell fractionation; immunofluorescence colocalization |
The Journal of cell biology |
Medium |
9412458
|
| 1999 |
SUMO-1 modification of PML at K487/K490 (within its nuclear localization signal region) is mediated by UBC9 binding to PML's RING finger domain. The SUMO-1 modification of PML-RARα fusion protein leads to SUMO-1-dependent degradation of PML-RARα in vitro. |
In vitro and in vivo SUMOylation assay; site-directed mutagenesis; yeast two-hybrid (UBC9-PML interaction); immunoprecipitation |
Journal of cell science |
Medium |
9885291
|
| 2000 |
PML is required for proper formation of PML nuclear bodies; SUMO-1 conjugation of PML is a prerequisite for this function. In primary PML−/− cells, nuclear body proteins (Sp100, CBP, ISG20, Daxx, SUMO-1) fail to accumulate in nuclear bodies and are mislocalized. A SUMO-1-conjugation-deficient PML mutant cannot restore nuclear body formation. |
PML−/− primary cells; re-expression of wild-type vs. SUMO-conjugation-deficient PML mutant; immunofluorescence localization of nuclear body components |
Blood |
High |
10779416
|
| 2000 |
Mdm2 is SUMOylated at K446 within its RING finger domain. SUMO-1 modification prevents Mdm2 self-ubiquitination and increases its E3 ligase activity toward p53 in vitro. A K446R mutant that cannot be SUMOylated is more stable but causes increased p53 degradation and inhibits p53-mediated apoptosis. DNA damage (radiation) decreases Mdm2 SUMOylation, inversely correlating with p53 levels. |
In vitro SUMOylation and ubiquitination assays; site-directed mutagenesis (K446R); apoptosis assay; immunoprecipitation |
Cell |
High |
10892746
|
| 2000 |
Androgen receptor (AR) is SUMOylated in an androgen-enhanced fashion at consensus PsiKXE motifs in its N-terminal domain. Mutation of the SUMOylated lysines enhances AR transcriptional activity without affecting its transrepressing activity, indicating that SUMO-1 modification negatively regulates AR transactivation. |
In vivo SUMOylation assay; site-directed mutagenesis; transactivation reporter assay; co-immunoprecipitation with Ubc9 |
Proceedings of the National Academy of Sciences of the United States of America |
High |
11121022
|
| 2000 |
c-Jun is modified by SUMO-1 at K229. JNK phosphorylation of c-Jun at S63/S73 inhibits SUMO-1 modification; a K229R mutant shows increased transactivation on AP-1-containing promoters, indicating SUMO-1 negatively regulates c-Jun activity. SUMO-1 modification of p53 is similarly inhibited by phosphorylation but is unaffected by Mdm2-mediated ubiquitination. |
In vitro and in vivo SUMOylation; site-directed mutagenesis; transactivation reporter assays; JNK activation experiments |
The Journal of biological chemistry |
High |
10788439
|
| 2000 |
SUMO-1 modification of SUMO-2/3-vs-SUMO-1 substrates is functionally distinct: SUMO-2 and SUMO-3 conjugation to high-molecular-mass proteins is induced by protein-damaging stress (heat shock), whereas RanGAP1 is conjugated preferentially by SUMO-1 (not SUMO-2/3), demonstrating paralogue-specific substrate preferences. |
Paralogue-specific antibody; immunoblotting; heat-shock and stress treatments; comparison of SUMO-1 vs SUMO-2/3 modification of RanGAP1 |
The Journal of biological chemistry |
Medium |
10692421
|
| 2000 |
SUMO-1 conjugation targets topoisomerase I (TOP1) in response to camptothecin (CPT)-induced DNA damage in both mammalian and yeast cells expressing human TOP1. This modification depends on UBC9; TOP1 physically interacts with UBC9. UBC9 mutant yeast expressing human TOP1 are hypersensitive to CPT, implicating UBC9/SUMO-1 in repair of TOP1-mediated DNA damage. |
Immunoblotting with SUMO-1/Smt3p antibodies; co-immunoprecipitation (TOP1–UBC9); genetic epistasis (ubc9 mutant yeast + CPT sensitivity) |
Proceedings of the National Academy of Sciences of the United States of America |
Medium |
10759568
|
| 2000 |
SUMO-1 conjugation to DNA topoisomerase IIα and IIβ is induced by topoisomerase II-mediated DNA damage (VM-26) and also by ICRF-193 (which traps topoisomerase II in a clamp conformation without causing DNA strand breaks), suggesting the modification responds to protein conformational change rather than only DNA damage. |
Immunological characterization (anti-SUMO-1 and anti-topoII blotting); co-immunoprecipitation; drug treatment of HeLa cells |
The Journal of biological chemistry |
Medium |
10862613
|
| 2001 |
Heat shock factor 1 (HSF1) undergoes stress-induced SUMO-1 modification at K298. SUMO-1 modification converts HSF1 to its DNA-binding form in a reconstituted in vitro SUMO-1 reaction. Mutation K298R prevents HSF1 colocalization with SUMO-1 in nuclear stress granules and reduces stress-induced transcriptional activity. |
In vitro reconstituted SUMO-1 modification assay; supershift EMSA with anti-SUMO-1; site-directed mutagenesis (K298R); immunofluorescence colocalization; transactivation assay |
The Journal of biological chemistry |
High |
11514557
|
| 2002 |
SUMO-1 modification of Sp3 at acceptor lysines represses its transcriptional activation and relocalizes it to the nuclear periphery and nuclear dots. Expression of SUMO-1 protease SuPr-1, or mutation of SUMO acceptor lysines, converts Sp3 to a strong activator with diffuse nuclear distribution. Covalent gene fusion of SUMO-1 to Sp3 is sufficient to repress transcription and drive nuclear peripheral/dot localization. |
Site-directed mutagenesis; SUMO-1 protease (SuPr-1) expression; SUMO-1–Sp3 fusion construct; transactivation reporter assay; immunofluorescence |
Molecular cell |
High |
12419227
|
| 2002 |
The SUMO-1 protease SuPr-1 hydrolyzes SUMO-1-modified PML and redistributes PML from PML nuclear bodies (PODs), as well as other POD-associated proteins (CBP, Daxx). SuPr-1-dependent activation of c-Jun transcription requires PML and is lost in PML-deficient fibroblasts, placing SUMO-1 deconjugation from PML in the transcriptional regulatory pathway. |
SUMO-1 hydrolase activity assay; immunofluorescence (PML redistribution); transcription reporter; PML−/− fibroblasts (genetic epistasis) |
Molecular cell |
High |
12419228
|
| 2002 |
SENP2 (a SUMO-1 protease) associates with the nucleoplasmic face of nuclear pores by binding Nup153 via its N-terminal domain. Deletion of the Nup153-interacting region of SENP2 significantly alters the spectrum of SUMO-1 conjugates in the cell, indicating that pore association restricts SENP2 activity to a subset of nuclear SUMO-1 conjugates. |
Localization by transfection/imaging; co-immunoprecipitation (SENP2–Nup153); deletion mutagenesis; immunoblotting of SUMO-1 conjugates after SENP2 domain removal |
The Journal of biological chemistry |
Medium |
11896061
|
| 2002 |
HDAC1 is SUMOylated in vitro and in vivo at C-terminal K444 and K476. Mutation of these residues profoundly reduces HDAC1-mediated transcriptional repression, and eliminates HDAC1-induced cell cycle and apoptotic responses upon overexpression, without affecting HDAC1 association with mSin3A. |
In vitro and in vivo SUMOylation assays; site-directed mutagenesis (K444R/K476R); transcriptional reporter assay; co-immunoprecipitation with mSin3A; cell cycle/apoptosis assays |
The Journal of biological chemistry |
High |
11960997
|
| 2002 |
SUMO-1 targets RanGAP1 to kinetochores and mitotic spindles. RanGAP1 associates with mitotic spindles and concentrates near kinetochores from nuclear envelope breakdown until late anaphase. A SUMO-1-conjugation-deficient RanGAP1 mutant fails to associate with spindles; RanBP2 co-localizes with RanGAP1 on spindles, suggesting a RanGAP1–SUMO-1–RanBP2 complex mediates mitotic targeting. |
Immunofluorescence; SUMO-1-deficient RanGAP1 mutant expression; colocalization with RanBP2 during mitosis |
The Journal of cell biology |
High |
11854305
|
| 2003 |
SUMO-1/Ubc9 promotes nuclear accumulation and metabolic stability of Smad4. SUMO-1 overexpression increases Smad4 levels and nuclear localization, enhancing TGF-β transcriptional responses; Ubc9 siRNA knockdown has the opposite effect. SUMO-1 modification of Smad4 protects it from ubiquitin-dependent proteasomal degradation. |
Overexpression and siRNA knockdown of Ubc9/SUMO-1; subcellular fractionation; ubiquitination and half-life assays; transcriptional reporter assay |
The Journal of biological chemistry |
High |
12813045
|
| 2004 |
SUMO-1 conjugates DRP1 (dynamin-related protein 1) and numerous mitochondrial outer-membrane proteins; Ubc9 and SUMO-1 are specific DRP1-interacting proteins. YFP:SUMO-1 localizes to sites of mitochondrial fission and the tips of fragmented mitochondria. SUMO-1 overexpression stabilizes DRP1 from degradation, resulting in increased mitochondrial fragmentation. |
Co-immunoprecipitation (SUMO1/Ubc9–DRP1); video microscopy of YFP:SUMO1 at fission sites; mitochondrial fractionation; SUMOylation assay; DRP1 stability assay |
Current biology |
High |
14972687
|
| 2004 |
SUMO-1 modification of GATA4 at K366 (mediated by E3 ligase PIAS1 via its RING finger domain) enhances GATA4 transcriptional activity and promotes GATA4 nuclear occupation. SUMO-1/PIAS1 together trigger activation of cardiogenic genes in pluripotent 10T1/2 fibroblasts. |
In vitro and in vivo SUMOylation assays; site-directed mutagenesis (K366R); transactivation reporter assay; nuclear localization imaging; cardiogenic gene activation in 10T1/2 cells |
The Journal of biological chemistry |
Medium |
15337742
|
| 2005 |
Crystal structure of the central region of human TDG conjugated to SUMO-1 at 2.1 Å resolution reveals a helix protruding from the protein surface that interferes with product DNA, promoting TDG dissociation from the abasic site after base excision. Both covalent attachment and non-covalent SUMO-1–TDG contacts (validated by mutagenesis) are required for DNA release. |
X-ray crystallography (2.1 Å); site-directed mutagenesis of non-covalent SUMO-1–TDG interface; DNA-binding/release assay |
Nature |
High |
15959518
|
| 2005 |
XPC protein is modified by both SUMO-1 and ubiquitin following UV irradiation in human fibroblasts, and these modifications require DDB2 and XPA. SUMO-1 modification of XPC protects it from degradation; in XP-A cells where XPC SUMOylation does not occur, XPC is significantly degraded after UV. |
Reciprocal immunoprecipitation; siRNA knockdown of SUMO-1; NER-deficient cell lines (XP-A, XP-C, XP-E); proteasome inhibitor treatment |
Nucleic acids research |
Medium |
16030353
|
| 2006 |
SUMO-interacting motifs (SIMs) form a beta-strand that binds SUMO-1 or SUMO-2 in parallel or antiparallel orientation relative to the β2-strand of SUMO. A stretch of acidic amino acids and/or phosphorylated serine residues flanking the SIM determines paralogue specificity (SUMO-1 vs SUMO-2) and can modulate spatial orientation of the interaction. |
Yeast two-hybrid screen; bioinformatics; NMR spectroscopy mapping of SIM binding surface on SUMO-1 and SUMO-2 |
The Journal of biological chemistry |
High |
16524884
|
| 2006 |
SUMO-1 modification of DJ-1 at K130 (promoted by PIASxα or PIASy) is required for all DJ-1 functions including ras-dependent transformation, cell growth promotion, and anti-UV-induced apoptosis. Parkinson's disease-associated mutant DJ-1 L166P is improperly SUMOylated, becomes insoluble, mislocalizes to mitochondria, and is degraded by the proteasome. |
In vivo SUMOylation assay; site-directed mutagenesis (K130R); functional assays (transformation, cell growth, apoptosis); subcellular localization; proteasome inhibitor treatment |
Cell death and differentiation |
Medium |
15976810
|
| 2006 |
Phosducin is SUMOylated at K33 in a consensus PsiKXE motif; SUMOylation protects phosducin from proteasomal degradation (K33R mutant has decreased stability and increased ubiquitination). SUMO-1 modification of phosducin decreases its ability to bind Gβγ subunits. |
In vitro and in vivo SUMOylation assays; site-directed mutagenesis (K33R); protein stability assay; ubiquitination assay; Gβγ co-immunoprecipitation |
The Journal of biological chemistry |
Medium |
16421094
|
| 2006 |
SUMO-1 modification of SOD1 at K75 increases SOD1 steady-state levels and promotes aggregation. K75R mutation abolishes SOD1 SUMOylation; SUMO-1 co-localizes with SOD1 aggregates. The effect is observed for both wild-type and familial ALS-associated mutant SOD1. |
In vivo SUMOylation assay; site-directed mutagenesis (K75R); immunofluorescence colocalization; steady-state protein level assessment |
Biochemical and biophysical research communications |
Medium |
16828461
|
| 2007 |
Increased SUMO-1 modification of PML in rheumatoid arthritis synovial fibroblasts contributes to resistance to Fas-induced apoptosis by increasing recruitment of the transcriptional repressor DAXX to PML nuclear bodies. SENP1 (nuclear SUMO protease), expressed at lower levels in RA SFs, can revert this effect by releasing DAXX from PML nuclear bodies. |
Overexpression and knockdown experiments; immunoprecipitation; DAXX-PML NB localization assay; Fas-induced apoptosis assay; SENP1 overexpression rescue |
Proceedings of the National Academy of Sciences of the United States of America |
Medium |
17360386
|
| 2008 |
Serine 2 of the SUMO-1 N-terminal protrusion is phosphorylated in vivo, detected in human, yeast, and Drosophila cells by high-accuracy mass spectrometry, indicating an evolutionarily conserved modification of the SUMO modifier itself. SUMO-2 and SUMO-3 differ at this position; only SUMO-3 could be phosphorylated equivalently. |
Endogenous protein mass spectrometry (high mass accuracy MS and MS/MS, complementary fragmentation); cross-species comparison |
Journal of proteome research |
Medium |
18707152
|
| 2008 |
In Sumo1−/− mice, SUMO-1-conjugated RanGAP1 is undetectable; however, Sumo1-null mice are viable and fertile with no developmental defects, indicating most SUMO-1 functions are compensated in vivo by SUMO-2 and SUMO-3. Expression of Sumo2 and Sumo3 mRNAs was not upregulated in Sumo1-null mice, suggesting compensation occurs at the protein modification level. |
Homologous recombination Sumo1 knockout; RT-PCR; immunoblotting for SUMO-1-conjugated RanGAP1 in MEFs; phenotypic analysis (viability, fertility, Mendelian ratios) |
Molecular and cellular biology |
High |
18573887
|
| 2011 |
The RanBP2/RanGAP1*SUMO1/Ubc9 complex at the nuclear pore functions as a SUMO E3 ligase with specificity for SUMO1 over SUMO2. RanBP2 domain IR1 primarily provides the E3 ligase activity and protects RanGAP1-SUMO1/UBC9 from proteases; IR2 retains SUMO1-interaction that promotes SUMO1-specific E3 activity. Crystal structures of UBC9 complexed with RanGAP1-SUMO1 vs SUMO2 reveal more extensive contacts for SUMO1. |
Domain deletion/swap constructs; protease protection assays; automodification assays; X-ray crystal structures of UBC9–RanGAP1–SUMO1/2 complexes |
The Journal of biological chemistry |
High |
22194619
|
| 2012 |
SUMO-1 modification of PTEN at K266 (in the CBR3 loop of the C2 domain) facilitates PTEN binding to the plasma membrane through electrostatic interactions. This promotes downregulation of the PI3K/AKT pathway and suppresses anchorage-independent proliferation and tumor growth in vivo. K254 is also a minor SUMOylation site. |
In vivo and in vitro SUMOylation assays; site-directed mutagenesis (K266R, K254R); membrane fractionation; AKT phosphorylation assay; soft-agar and xenograft tumor assays |
Nature communications |
High |
22713753
|
| 2012 |
SUMO-1 occupies chromatin at promoters of actively transcribed housekeeping genes (including translation factors and ribosomal subunit genes) from G1 through late S phase but not mitosis, correlating with H3K4me3 marks. Depletion of SUMO-1 downregulates these SUMO-1-marked genes, indicating that chromatin-associated SUMO-1 positively marks and activates transcription of ribosome biogenesis and translation genes. |
ChIP-seq (SUMO-1 chromatin occupancy across cell cycle); SUMO-1 siRNA depletion; gene expression analysis |
Nucleic acids research |
Medium |
22941651
|
| 2014 |
CDK6 is SUMOylated by SUMO1 at K216, which blocks ubiquitination at K147, stabilizing CDK6 protein throughout the cell cycle. CDK1 phosphorylates Ubc9, which in turn mediates CDK6 SUMOylation during mitosis; CDK6 remains SUMOylated in G1 to drive G1/S transition. This SUMOylation-stabilization mechanism promotes glioblastoma progression. |
In vivo and in vitro SUMOylation/ubiquitination assays; site-directed mutagenesis (K216R, K147R); cell cycle synchronization; Ubc9 phosphorylation by CDK1 in vitro; CDK6 stability assay |
Nature communications |
High |
24953629
|
| 2015 |
Akt directly phosphorylates SUMO1 at T76, stabilizing the SUMO1 protein, and phosphorylates Ubc9 at T35, promoting Ubc9 thioester bond formation. These modifications by Akt enhance global SUMOylation and alter substrate SUMOylation specificity (STAT1, CREB), creating a mechanism by which Akt SUMOylation regulates cell proliferation through cyclin D1. |
In vitro kinase assays (Akt phosphorylating Ubc9 and SUMO1); site-directed mutagenesis (T35, T76); thioester bond formation assay; global SUMOylation assessment; cyclin D1/cell proliferation assays |
Oncogene |
Medium |
25867063
|
| 2016 |
The RanBP2/RanGAP1*SUMO1/Ubc9 complex at the nuclear pore functions as an autonomous disassembly machine for Crm1-dependent nuclear export complexes, with preference for Crm1 over other exportins. Three in vitro reconstituted disassembly intermediates were characterized: Crm1 export complex binding via FG-repeat patches, cargo release by RanBP2's Ran-binding domains, and Crm1 retention after Ran-GTP hydrolysis. All intermediates are compatible with SUMO E3 ligase activity. |
In vitro reconstitution of disassembly intermediates with purified components; biochemical characterization of intermediates; E3 ligase activity assay in the context of export complex disassembly |
Nature communications |
High |
27160050
|
| 2019 |
PKD2 (polycystin-2) channels in arterial smooth muscle myocytes undergo triple SUMO1 modification; SUMO-PKD2 cycles between the plasma membrane and intracellular compartments. Intravascular pressure activates voltage-dependent Ca2+ influx, which promotes return of internalized SUMO-PKD2 to the plasma membrane. Reduced pressure, hyperpolarization, or Ca2+ influx inhibition causes lysosomal degradation of internalized SUMO-PKD2, reducing surface channel density. Desumoylation leads to loss of Na+ current activation and vasodilation. |
Inducible cell-specific Pkd2 knockout mice; biochemical SUMOylation assay; patch-clamp electrophysiology; live-cell trafficking assay; lysosomal inhibition; Ca2+ channel blockade |
Proceedings of the National Academy of Sciences of the United States of America |
High |
31822608
|
| 2019 |
NLRP3 is SUMOylated by SUMO1 at K204 (mediated by Ubc9), which facilitates ASC oligomerization and NLRP3 inflammasome activation and IL-1β secretion. SENP3 deSUMOylates NLRP3 at this site to attenuate ASC recruitment, inflammasome activation, and IL-1β cleavage. |
In vivo and in vitro SUMOylation assays; site-directed mutagenesis (K204R); co-immunoprecipitation (Ubc9–NLRP3); ASC oligomerization assay; IL-1β secretion assay; SENP3 overexpression/knockdown |
FASEB journal |
Medium |
31914638
|
| 2017 |
SUMO1 modification of KHSRP at K87 (enhanced by hypoxia) inhibits its interaction with the pri-miRNA/Drosha-DGCR8 complex and promotes KHSRP translocation from nucleus to cytoplasm. This impairs processing of pre-miRNAs from pri-miRNAs that harbor short G-rich stretches in their terminal loops (TL-G-Rich miRNAs, including let-7 family), resulting in their downregulation and consequent tumorigenesis. |
In vivo and in vitro SUMOylation assays; site-directed mutagenesis (K87); nuclear/cytosol fractionation; co-immunoprecipitation with Drosha-DGCR8; RNA immunoprecipitation; high-throughput miRNA sequencing; xenograft tumor model |
Molecular cancer |
Medium |
29020972
|