Affinage

KPNA4

Importin subunit alpha-3 · UniProt O00629

Length
521 aa
Mass
57.9 kDa
Annotated
2026-06-10
26 papers in source corpus 9 papers cited in narrative 10 extracted findings
Cross-family judge vs UniProt: Affinage preferred faithfulness: 5/6 claims corpus-supported (83%)

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

KPNA4 (Qip1/importin alpha3) is a classical nuclear localization signal (NLS) receptor of the importin-alpha family that recognizes NLS-bearing cargo and bridges it to the nuclear import machinery (PMID:9168958). It displays isoform selectivity among importin-alpha members, binding the NLS of DNA helicase Q1/RecQL and of SV40 T antigen in a manner distinct from related receptors such as hSrp1 (PMID:9168958). Through this transport activity KPNA4 controls the nuclear access of regulatory cargoes: it mediates cytoplasm-to-nucleus translocation of the NF-κB subunit p65 (PMID:27941876, PMID:33188837) and is required for p53 nuclear import, with loss of Kpna4 in zebrafish causing p53 accumulation in the lens and cataract-like lens defects (PMID:33798680). By driving NF-κB nuclear translocation, KPNA4 promotes cancer cell migration, invasion, EMT, and metastasis across prostate, glioblastoma, thyroid, and pancreatic models, where it is held in check by tumor-suppressive microRNAs including miR-708, miR-181b, and miR-548b-3p (PMID:27941876, PMID:26283154, PMID:33188837). KPNA4 is also exploited by viruses, contributing to influenza A NP-dependent viral replication beyond simple NP nuclear localization (PMID:23383277). In vivo, Kpna4-deficient mice show an ADHD-like hypermotoric phenotype, indicating a role in neuronal regulation of locomotor behavior (PMID:40565582).

Mechanistic history

Synthesis pass · year-by-year structured walk · 9 steps
  1. 1997 Medium

    Established KPNA4 as a bona fide importin-alpha family NLS receptor and showed it is not redundant with other family members, answering whether a newly identified importin-alpha homologue had cargo-binding specificity.

    Evidence GST-pulldown from human cell lysates and yeast two-hybrid against DNA helicase Q1/RecQL and SV40 T antigen NLS

    PMID:9168958

    Open questions at the time
    • No structural basis for isoform selectivity defined
    • Import competence not demonstrated in a reconstituted transport assay
    • Full cargo repertoire unresolved
  2. 2013 Medium

    Showed KPNA4 contributes to influenza A virus replication through preferential binding to the unconventional NP NLS, indicating a transport-linked role in viral RNA synthesis beyond bulk NP nuclear localization.

    Evidence siRNA knockdown of Qip1 in cells infected with NP mutant virus, viral growth and vRNA transcription assays, NP binding assays

    PMID:23383277

    Open questions at the time
    • Mechanism linking KPNA4 to vRNA transcription not defined
    • Does not separate import-dependent from import-independent contributions
    • Single virus mutant system
  3. 2015 Medium

    Identified KPNA4 as a direct miR-181b target whose restoration reverses miR-181b suppression of EMT, connecting KPNA4 levels to invasive phenotype control.

    Evidence miRNA overexpression with KPNA4 rescue, in vitro invasion and in vivo tumor models in glioblastoma

    PMID:26283154

    Open questions at the time
    • Molecular cargo driving EMT not pinned down in this study
    • Single tumor type
    • Does not establish transport mechanism
  4. 2016 Medium

    Demonstrated that KPNA4-mediated NF-κB nuclear translocation drives cancer cell migration, invasion, and metastasis, and that KPNA4 is repressed by miR-708, linking the transport function to a defined in vivo malignant phenotype.

    Evidence Stable shRNA knockdown, mouse xenograft/metastasis models, cytokine measurement, miR-708 luciferase reporter in prostate cancer

    PMID:27941876

    Open questions at the time
    • Direct p65-KPNA4 binding not structurally resolved
    • Contribution of macrophage/osteoclast effects vs tumor-intrinsic effects not separated
    • Single lab
  5. 2020 Medium

    Confirmed KPNA4 controls nuclear p65 abundance and NF-κB transcriptional activity in a second cancer type, reinforcing the NF-κB transport axis and adding miR-548b-3p as a regulator.

    Evidence KPNA4 overexpression/knockdown, NF-κB luciferase reporter, nuclear p65 immunodetection, xenograft in papillary thyroid cancer

    PMID:33188837

    Open questions at the time
    • Direct NLS recognition of p65 not shown biochemically here
    • Apoptosis link to NF-κB loss correlative
    • Single lab
  6. 2021 Medium

    Established KPNA4 as the import receptor required for p53 nuclear localization in lens epithelium, giving a developmental/homeostatic cargo and phenotype distinct from cancer NF-κB roles.

    Evidence CRISPR/Cas9 kpna4 knockout zebrafish, electron microscopy, p53 immunostaining, H2O2 stress assay in human lens epithelial cells

    PMID:33798680

    Open questions at the time
    • Direct KPNA4-p53 NLS binding not demonstrated biochemically
    • Whether cataract phenotype is fully p53-dependent unresolved
    • Single model organism
  7. 2022 Low

    Linked KPNA4 to FAK and PD-L1 expression in pancreatic adenocarcinoma, extending its pro-tumor role but without a defined transport mechanism.

    Evidence siRNA knockdown with CCK-8, colony formation, wound-healing assays, western blot for FAK and PD-L1

    PMID:35425701

    Open questions at the time
    • No direct KPNA4-FAK interaction shown; correlative only
    • Cargo mediating FAK/PD-L1 changes unidentified
    • Single lab western-blot readouts
  8. 2025 Medium

    Revealed a physiological neuronal requirement for KPNA4 by showing loss causes ADHD-like hyperactivity, indicating a behavioral role independent of motor neuron integrity.

    Evidence Kpna4 knockout mouse with behavioral locomotion assays at multiple timepoints

    PMID:40565582

    Open questions at the time
    • Molecular cargo/pathway underlying behavior unknown
    • No cellular or circuit mechanism defined
    • Single lab
  9. 2026 Low

    Positioned KPNA4 as an NPC-associated receptor for SV40 nuclear entry downstream of Nesprin-2/SUN1 targeting, expanding its role to viral genome delivery.

    Evidence Knockdown/overexpression, co-immunoprecipitation, nuclear entry assays in cell culture (preprint)

    PMID:41959248

    Open questions at the time
    • Preprint, single lab, mechanistic detail limited
    • Direct virus-KPNA4 binding interface undefined
    • No reciprocal validation reported

Open questions

Synthesis pass · forward-looking unresolved questions
  • How KPNA4 selects among its many cargoes (NF-κB, p53, viral proteins) in a cell-type- and signal-specific manner, and what molecular cargo underlies its neuronal phenotype, remains unresolved.
  • No structural model of KPNA4-cargo NLS recognition
  • Cargo specificity determinants vs other importin-alpha members unmapped
  • Neuronal cargo/pathway unidentified

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0140104 molecular carrier activity 5 GO:0060090 molecular adaptor activity 2 GO:0001618 virus receptor activity 1
Localization
GO:0005634 nucleus 3 GO:0005829 cytosol 2
Pathway
R-HSA-9609507 Protein localization 4 R-HSA-1643685 Disease 3
Partners

Evidence

Reading pass · 10 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
1997 KPNA4 (Qip1) was identified as a novel importin-alpha homologue that directly binds DNA helicase Q1/RecQL via its putative NLS; this interaction was confirmed by GST-pulldown from human cell lysates and two-hybrid assays. Qip1 and Rch1, but not hSrp1, could interact with the NLS of DNA helicase Q1, demonstrating isoform selectivity among importin-alpha family members. GST pulldown from human cell lysates, yeast two-hybrid Biochemical and biophysical research communications Medium 9168958
1997 KPNA4 (Qip1) binds the NLS of SV40 T antigen, analogous to Rch1 and hSrp1, confirming its role as a classical NLS receptor. Yeast two-hybrid Biochemical and biophysical research communications Medium 9168958
2013 KPNA4 (Qip1/importin alpha3) participates in influenza A virus NP nuclear import: the N-terminal 110-aa region of NP containing the unconventional NLS preferentially bound Qip1. Silencing of Qip1 decreased vRNA transcription and replication of the S9A NP mutant virus without altering NP nuclear localization, indicating a role for KPNA4 in viral replication beyond nuclear transport. siRNA knockdown of Qip1 in cells infected with NP mutant virus; viral growth assay; vRNA transcription measurement; NP binding assays PloS one Medium 23383277
2016 KPNA4 mediates cytoplasm-to-nucleus translocation of NF-κB in prostate cancer cells; knockdown of KPNA4 reduces cell migration, invasion, and distant metastasis in mouse models, and modulates TNF-α and TNF-β production to alter macrophage polarization and osteoclastogenesis. KPNA4 was also established as a direct target of miR-708. Stable shRNA knockdown, mouse xenograft/metastasis models, cytokine measurement, luciferase reporter assay for miR-708 targeting Oncogene Medium 27941876
2015 KPNA4 is a direct target of miR-181b; miR-181b suppresses EMT (epithelial-mesenchymal transition) in glioblastoma by targeting KPNA4, and restoration of KPNA4 expression abrogates the EMT-inhibitory effect of miR-181b. miRNA overexpression, KPNA4 rescue experiments, in vitro invasion assays, in vivo tumor models Scientific reports Medium 26283154
2020 KPNA4 promotes NF-κB nuclear translocation in papillary thyroid cancer cells; overexpression of KPNA4 increased nuclear p65 and NF-κB luciferase reporter activity, while KPNA4 silencing reduced nuclear p65 and induced apoptosis. KPNA4 is negatively regulated by miR-548b-3p. KPNA4 overexpression/knockdown, NF-κB luciferase reporter assay, nuclear p65 immunodetection, xenograft mouse model Life sciences Medium 33188837
2021 KPNA4 is required for p53 nuclear import in lens epithelial cells; kpna4 knockout zebrafish (CRISPR/Cas9) develop lens defects resembling cataracts, and loss of Kpna4 causes accumulation of p53 in the center of the lens. In hydrogen peroxide-induced apoptosis, KPNA4 and p53 protein levels increase coordinately in human lens epithelial cells. CRISPR/Cas9 kpna4 knockout in zebrafish, transmission electron microscopy, immunostaining of p53 in lens, H2O2 stress assay in human lens epithelial cells Gene Medium 33798680
2022 KPNA4 knockdown in pancreatic ductal adenocarcinoma cells suppresses proliferation, colony formation, and migration, and is associated with decreased expression of FAK (focal adhesion kinase) and PD-L1, placing KPNA4 upstream of FAK signaling in PDAC progression. siRNA knockdown, CCK-8, colony formation, wound-healing assays, western blot for FAK and PD-L1 Frontiers in oncology Low 35425701
2025 Kpna4-deficient mice display a hypermotoric, ADHD-like behavioral phenotype, supporting a neuronal function for KPNA4 in regulating locomotor behavior; no motor neuron deficits were detected. Kpna4 knockout mouse model, behavioral locomotion assays at multiple time points Genes Medium 40565582
2026 SV40 (polyomavirus) exploits KPNA4 as an NPC-associated importin receptor for nuclear entry: after Nesprin-2/SUN1-dependent targeting to the nuclear membrane, SV40 binds KPNA4 which translocates the virus into the nucleus. Functional knockdown/overexpression, co-immunoprecipitation, nuclear entry assays in cell culture (preprint) bioRxivpreprint Low 41959248

Source papers

Stage 0 corpus · 26 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
1997 Cloning of a cDNA encoding a novel importin-alpha homologue, Qip1: discrimination of Qip1 and Rch1 from hSrp1 by their ability to interact with DNA helicase Q1/RecQL. Biochemical and biophysical research communications 82 9168958
2019 YY1-mediated overexpression of long noncoding RNA MCM3AP-AS1 accelerates angiogenesis and progression in lung cancer by targeting miR-340-5p/KPNA4 axis. Journal of cellular biochemistry 62 31693222
2015 Upregulation of miR-181s reverses mesenchymal transition by targeting KPNA4 in glioblastoma. Scientific reports 61 26283154
2021 Circ_ZFR contributes to the paclitaxel resistance and progression of non-small cell lung cancer by upregulating KPNA4 through sponging miR-195-5p. Cancer cell international 45 33407505
2016 Inhibition of KPNA4 attenuates prostate cancer metastasis. Oncogene 43 27941876
2019 MiR-3619-5p hampers proliferation and cisplatin resistance in cutaneous squamous-cell carcinoma via KPNA4. Biochemical and biophysical research communications 41 30967266
2021 Berberine Attenuates MPP+-Induced Neuronal Injury by Regulating LINC00943/miR-142-5p/KPNA4/NF-κB Pathway in SK-N-SH Cells. Neurochemical research 38 34427876
2020 STAT3-induced upregulation of circCCDC66 facilitates the progression of non-small cell lung cancer by targeting miR-33a-5p/KPNA4 axis. Biomedicine & pharmacotherapy = Biomedecine & pharmacotherapie 37 32151944
2021 Ginsenoside Rg3 inhibits osteosarcoma progression by reducing circ_0003074 expression in a miR-516b-5p/KPNA4-dependent manner. Journal of orthopaedic surgery and research 19 34930332
2020 LncRNA ST7-AS1, by regulating miR-181b-5p/KPNA4 axis, promotes the malignancy of lung adenocarcinoma. Cancer cell international 18 33327962
2022 Long noncoding RNA SNHG14 knockdown exerts a neuroprotective role in MPP+-induced Parkinson's disease cell model through mediating miR-135b-5p/KPNA4 axis. Metabolic brain disease 17 35781593
2013 Importin α3/Qip1 is involved in multiplication of mutant influenza virus with alanine mutation at amino acid 9 independently of nuclear transport function. PloS one 13 23383277
2021 LINC00467 facilitates osteosarcoma progression by sponging miR‑217 to regulate KPNA4 expression. International journal of molecular medicine 11 33537823
2020 KPNA4 regulated by miR-548b-3p promotes the malignant phenotypes of papillary thyroid cancer. Life sciences 11 33188837
2003 Generation of a rat monoclonal antibody specific for importin alpha3/Qip1. Hybridoma and hybridomics 11 14683601
2023 Circular RNA circ_0000376 promotes paclitaxel resistance and tumorigenesis of non-small cell lung cancer via positively modulating KPNA4 by sponging miR-1298-5p. Thoracic cancer 10 37455373
2021 KPNA4 is involved in cataract formation via the nuclear import of p53. Gene 8 33798680
2006 The Caenorhabditis elegans muscle specific serpin, SRP-3, neutralizes chymotrypsin-like serine peptidases. Biochemistry 8 16584183
2022 Long non-coding RNA UCA1 regulates MPP+-induced neuronal damage through the miR-671-5p/KPNA4 pathway in SK-N-SH cells. Metabolic brain disease 7 36515797
2022 Circular RNA hsa_circ_0008003 promotes the progression of non-small-cell lung cancer by sponging miR-548I and regulating KPNA4 expression. Thoracic cancer 5 36573325
2024 Hemoglobin nanoclusters-mediated regulation of KPNA4 in hypoxic tumor microenvironment enhances photodynamic therapy in hepatocellular carcinoma. Journal of nanobiotechnology 4 39135024
2020 MiR-596 activated by EP300 controls the tumorigenesis in epithelial ovarian cancer by declining BRD4 and KPNA4. Cancer cell international 4 32943995
2025 Deficiency in KPNA4, but Not in KPNA3, Causes Attention Deficit/Hyperactivity Disorder like Symptoms in Mice. Genes 1 40565582
2026 SV40 exploits the Nesprin-2-SUN1-KPNA4 axis for stepwise targeting and entry into the host nucleus to promote infection. bioRxiv : the preprint server for biology 0 41959248
2026 BMSC-Derived Exosomal miR-874-3p Protects against OGD/R-Induced Neuronal Injury in PC12 Cells via Regulating KPNA4. Neurochemical research 0 42149376
2022 Systematic Characterization of the Clinical Relevance of KPNA4 in Pancreatic Ductal Adenocarcinoma. Frontiers in oncology 0 35425701

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