| 2012 |
SMARCAD1 (and its yeast ortholog Fun30) is recruited to DNA double-strand break ends and promotes both Exo1- and Sgs1-dependent 5'-to-3' DNA end resection through a mechanism requiring its ATPase activity, facilitating homologous recombination repair. |
ChIP at DSBs, resection assays, ATPase mutant analysis, genetic epistasis with Exo1/Sgs1, camptothecin/PARP inhibitor sensitivity assays |
Nature |
High |
22960744
|
| 2011 |
SMARCAD1 ATPase activity is required for global deacetylation of histones H3/H4 and subsequent H3K9 methylation; SMARCAD1 associates with KAP1, HDAC1/2, and the histone methyltransferase G9a/GLP, and directly interacts with PCNA to be recruited to replication forks, thereby maintaining repressive heterochromatin after replication. |
Co-immunoprecipitation, PCNA interaction assays, histone modification analysis, ATPase mutant rescue, RNAi knockdown with heterochromatin/chromosome segregation phenotype readout |
Molecular cell |
High |
21549307
|
| 2018 |
ATM kinase phosphorylates SMARCAD1 at T906 in response to ionizing radiation, which is required for SMARCAD1 recruitment to DSBs; T906 phosphorylation is also required for subsequent ubiquitination of SMARCAD1 at K905 by RING1, and both modifications are essential for DNA end resection and HR-mediated repair. |
In vivo phosphorylation mapping, ATM inhibitor experiments, site-directed mutagenesis (T906A, K905R), Co-IP, HR repair assays, cell survival assays |
iScience |
High |
29888761
|
| 2018 |
Nucleosomes are excluded from a >1-kb region surrounding a mismatched base pair in a process dependent on Msh2-Msh6; Smarcad1/Fun30 is recruited to mismatch-carrying DNA in an Msh2-dependent but Mlh1-independent manner and facilitates mismatch repair by counteracting CAF-1-mediated chromatin assembly. |
Xenopus egg extract chromatin assembly/MMR assays, depletion experiments, genetic epistasis in budding yeast (double mutants with MSH2/3/6 and CAF-1) |
Genes & development |
High |
29899141
|
| 2017 |
The CUE1 domain of SMARCAD1 directly mediates interaction with the RBCC domain of KAP1 (TRIM28), and this interaction is required for nuclear retention of SMARCAD1 and its binding to KAP1 target genes including zinc finger protein and imprinted genes. |
Reciprocal Co-IP, in vitro pulldown with purified proteins, CUE1 domain mutants, ChIP at KAP1 target genes, nuclear fractionation |
The Journal of biological chemistry |
High |
29284678
|
| 2021 |
SMARCAD1 is an ATP-dependent histone octamer exchange factor capable of transferring the entire histone octamer from one DNA segment to another, and can perform de novo nucleosome assembly from histone octamer due to simultaneous binding of all histones; cryo-EM structure shows its ATPase domains engage the nucleosome differently from other remodelers. |
In vitro biochemical assays (octamer transfer, nucleosome assembly), cryo-EM structure determination, ATPase assays |
Science advances |
High |
34652950
|
| 2021 |
SMARCAD1 stabilizes active replication forks by preventing accumulation of 53BP1-associated nucleosomes; loss of SMARCAD1 allows 53BP1-mediated untimely PCNA removal via ATAD5, causing fork stalling, impaired fork restart, and ssDNA accumulation, which is rescued by 53BP1 loss in a BRCA1-dependent manner. |
Replication fork assays (DNA fiber), SMARCAD1 KO, epistasis with 53BP1/BRCA1/ATAD5, PCNA unloading assays, ssDNA detection |
Science advances |
High |
33952518
|
| 2019 |
SMARCAD1 promotes MMR-dependent apoptosis by facilitating recruitment of MutLα (MLH1-PMS2) to chromatin-bound MutSα (MSH2-MSH6) in response to O6-methylguanine; this function depends on SMARCAD1's ATPase activity. |
SMARCAD1 knockout cells, MNU treatment, co-immunoprecipitation of MutLα with chromatin-bound MutSα, caspase-9 activation assay, ATPase mutant analysis |
The Journal of biological chemistry |
High |
31843968
|
| 2016 |
SMARCAD1 acts with CBP to stimulate H2A acetylation at K5 and K8 within nucleosomes in an ATP-dependent manner, thereby activating transcription from chromatin templates; CBP is recruited to promoters prior to SMARCAD1, and genetic interaction between SMARCAD1/Etl1 and CBP/nej was confirmed in Drosophila. |
Biochemical column purification of activity from Drosophila nuclear extracts, in vitro histone acetylation assays, ChIP-seq, expression arrays, RNAi knockdown, Drosophila genetics |
Scientific reports |
High |
26888216
|
| 2017 |
SMARCAD1 preferentially associates with H3 arginine 26 citrullination (H3R26Cit); genome-wide co-localization of H3R26Cit and SMARCAD1 binding is extensive, and SMARCAD1 suppresses H3K9me3 heterochromatin formation at H3R26Cit-marked regions to maintain naive pluripotency. |
Histone peptide array binding (384 modifications), ChIP-seq, Smarcad1 knockdown in ESCs, H3Cit inhibition experiments |
Cell reports |
Medium |
28355564
|
| 2011 |
A skin-specific short isoform of SMARCAD1 is exclusively expressed in skin; splice-site mutations in the noncoding exon of this isoform cause autosomal-dominant adermatoglyphia by reducing stability of this short RNA isoform, implicating this isoform in dermatoglyph (fingerprint) development. |
Linkage/haplotype analysis, sequencing, minigene splicing assay, RT-PCR stability analysis |
American journal of human genetics |
Medium |
21820097
|
| 2008 |
Endogenous SMARCAD1 forms a protein complex with TRIM28 (KAP1) and binds in the vicinity of transcriptional start sites of candidate target genes. |
Protein co-immunoprecipitation, ChIP with genome tiling microarrays |
Journal of molecular biology |
Medium |
18675275
|
| 2023 |
MSH2-MSH3 is recruited to DNA DSB sites through interaction with SMARCAD1, and the MSH2-MSH3-SMARCAD1 complex facilitates recruitment of EXO1 for long-range resection, enhances EXO1 enzymatic activity, and inhibits POLθ access to DSBs, thereby promoting HR over polymerase theta-mediated end-joining. |
Co-immunoprecipitation, DSB recruitment assays, EXO1 activity assays, HR vs TMEJ repair pathway assays, knockdown/knockout experiments |
Nucleic acids research |
Medium |
37140056
|
| 2023 |
SMARCAD1 directly interacts with the RNA Pol III transcription factor TFIIIC in mouse and human cells; this interaction is conserved across somatic and pluripotent cell types. SMARCAD1 also associates with architectural proteins cohesin, laminB, and DDX5 in mammalian cells. |
Endogenous co-immunoprecipitation, purified protein direct interaction assay, ChIP-seq, gene expression analysis |
Genes |
Medium |
37761933
|
| 2024 |
Phosphorylation of SMARCAD1 reduces its binding to nucleosomes, DNA, and histones H2A-H2B, and inhibits its ATP hydrolysis and histone exchange activities; the N-terminal region of SMARCAD1 is critical for nucleosome assembly and histone exchange. Phosphorylation has only marginal effect on H3-H4 binding and nucleosome assembly. |
Mutational analysis, in vitro activity assays (ATPase, histone exchange, nucleosome assembly), mass spectrometry phosphorylation mapping |
The Journal of biological chemistry |
High |
39424143
|
| 2025 |
SMARCAD1 preferentially remodels subnucleosomal hexasomes over canonical nucleosomes; cryo-EM structures of SMARCAD1 bound to nucleosome and hexasome reveal family-specific elements mediating hexasome binding; SMARCAD1 binds the canonical nucleosome in an inactive conformation. The FACT histone chaperone complex acts synergistically with H2A-H2B to promote SMARCAD1 activity in nucleosome remodeling. |
Cryo-EM structure determination, in vitro remodeling assays with hexasomes and nucleosomes, mutagenesis of family-specific elements, FACT co-activity assays |
Nature |
High |
40468067
|
| 2025 |
SMARCAD1 and TOPBP1 associate with H3K9me3-heterochromatin in ESCs and are required for maintenance of chromocenters at the transition from the 2C-like to the pluripotent state; SMARCAD1 nuclear localization is lost in 2C-like cells, and depletion of SMARCAD1 in mouse embryos causes developmental arrest, reduction of H3K9me3, and remodeling of heterochromatin foci. |
Chromatome profiling (genome capture proteomics), SMARCAD1/TOPBP1 depletion in mouse embryos, H3K9me3 ChIP/immunofluorescence, inducible 2C-like conversion system |
eLife |
Medium |
39969508
|
| 2024 |
At broken replication forks (single-ended DSBs), SMARCAD1 displaces 53BP1 to facilitate localization of ubiquitinated PCNA and PIF1 to DSBs, thereby activating break-induced replication (BIR). |
Epistasis analysis in cells, foci/localization assays for ubiquitinated PCNA and PIF1, SMARCAD1 knockdown, 53BP1 knockout |
bioRxivpreprint |
Low |
bio_10.1101_2024.09.11.612483
|
| 2024 |
SMARCAD1 directly binds R-loops via its ATPase domain and associates with the replisome through its N-terminal region; loss of these interactions leads to R-loop accumulation at active replication forks and increased mutagenesis at cancer mutation hotspots. |
In vitro R-loop binding assays, domain mutant analysis, genome-wide R-loop mapping (DRIP-seq), mutagenesis assays, SMARCAD1 mutant cell lines |
bioRxivpreprint |
Medium |
bio_10.1101_2024.09.13.612941
|
| 2024 |
PARP1-mediated recruitment of the SMARCAD1-MSH2/MSH3 complex to DSBs inhibits loading of DNA polymerase theta (POLθ), thereby suppressing TMEJ; this repressive complex is diminished in DNMT3A-mutant leukemia cells. |
Co-immunoprecipitation of SMARCAD1-MSH2/MSH3 complex, PARP1 inhibition experiments, POLθ loading assays at DSBs |
bioRxivpreprint |
Low |
bio_10.1101_2024.09.15.613155
|
| 2020 |
The yeast Fun30 chromatin remodeling enzyme (SMARCAD1 ortholog) is required for efficient pre-mRNA splicing; Fun30 is enriched in the gene body of intron-containing genes, and its chromatin remodeling activity is required for spliceosome recruitment. In mammalian cells, SMARCAD1 regulates alternative splicing. |
RNA-seq splicing analysis in fun30Δ yeast, ChIP of Fun30 at intron-containing genes, spliceosome recruitment ChIP, SMARCAD1 knockdown alternative splicing assay |
Biochemical and biophysical research communications |
Low |
32234239
|
| 2024 |
Smarcad1 is recruited to MLV provirus immediately upon integration and is required for establishment and maintenance of Trim28-dependent retroviral silencing; Smarcad1 stabilizes Trim28 binding to the provirus and is needed for proper deposition of histone H3.3 on the provirus. |
ChIP of Smarcad1/Trim28 at provirus, GFP-reporter MLV repression kinetics, Smarcad1 KD, H3.3 ChIP |
Mobile DNA |
Medium |
38468276
|
| 2022 |
Heat-induced SIRT1 recruitment to chromatin and H4K16 deacetylation impairs DNA end resection and HR repair; depletion of SMARCAD1 antagonizes SIRT1 recruitment to chromatin, and loss of SMARCAD1 phenocopies hyperthermia in impairing resection. |
Histone modification analysis after heat shock, SIRT1 ChIP, SMARCAD1 depletion, resection assays, γ-H2AX analysis |
iScience |
Medium |
35434547
|