Affinage

RING1

E3 ubiquitin-protein ligase RING1 · UniProt Q06587

Length
406 aa
Mass
42.4 kDa
Annotated
2026-04-28
41 papers in source corpus 14 papers cited in narrative 14 extracted findings

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

RING1 is a RING domain-containing E3 ubiquitin ligase that functions as a catalytic core subunit of Polycomb Repressive Complex 1 (PRC1), monoubiquitinating histone H2A at K119 to enforce transcriptional silencing of developmental genes, including maintaining poised RNA Polymerase II at bivalent loci in embryonic stem cells (PMID:18037880, PMID:29386386). RING1 assembles into PcG complexes through direct interactions with BMI1, HPC/Polycomb homologs, and YY1, and its PRC1-mediated repression of BMP/Wnt ligand genes and Meis2 is essential for proper ventral telencephalon patterning and limb proximal-distal specification (PMID:9199346, PMID:33177537, PMID:26674308). Beyond chromatin, RING1 ubiquitinates non-histone substrates: it promotes p53 proteasomal degradation independently of PRC1, and catalyzes K48-linked ubiquitination of GSDMD at K51/K168 to suppress pyroptosis (PMID:29187402, PMID:40369166). A de novo RING1 missense mutation (p.R95Q) that selectively ablates nucleosomal H2A monoubiquitination causes neurodevelopmental defects including impaired neuronal migration and delayed DNA damage repair in neural progenitor cells (PMID:29386386, PMID:39256363).

Mechanistic history

Synthesis pass · year-by-year structured walk · 11 steps
  1. 1997 High

    Establishing that RING1 is a Polycomb group protein: RING1 was shown to physically interact with multiple PcG proteins and function as a transcriptional repressor, placing it within the PcG silencing machinery.

    Evidence Yeast two-hybrid, co-immunoprecipitation, colocalization, and reporter repression in mammalian cells

    PMID:9199346

    Open questions at the time
    • Enzymatic activity of RING1 not yet identified
    • Mechanism of transcriptional repression unknown
  2. 1999 High

    Defining the modular architecture of RING1 interactions: self-association and BMI1 binding occur through separable domains, and overexpression demonstrated oncogenic potential via deregulation of PcG targets.

    Evidence Directed yeast two-hybrid, in vitro binding, soft-agar colony assay, and xenograft tumor formation

    PMID:9858531

    Open questions at the time
    • Oncogenic mechanism not linked to specific enzymatic activity
    • Whether RING1 transformation depends on PcG complex integrity unknown
  3. 2004 High

    Expanding RING1's interactome beyond PcG: RING1 was found to bridge into Notch signaling by interacting with KyoT2 and suppressing RBP-J-mediated transactivation, while cross-species rescue confirmed deep evolutionary conservation of RING1 function.

    Evidence Yeast two-hybrid, GST pulldown, co-IP, reporter assays (KyoT2 study); genetic rescue of Drosophila Ring/Sce mutants with murine Ring1

    PMID:14999091 PMID:15147763

    Open questions at the time
    • Physiological relevance of RING1-KyoT2-RBP-J complex in development not established
    • Whether Notch crosstalk depends on RING1 catalytic activity unknown
  4. 2006 Medium

    Genetic evidence linked RING1 and YY1 in maintaining axial skeletal patterning, establishing that RING1-containing PcG complexes coordinate with sequence-specific DNA-binding factors in vivo.

    Evidence Double-mutant mice (Ring1/YY1 epistasis) and GST pulldown

    PMID:16624538

    Open questions at the time
    • Direct target genes mediating the skeletal phenotype not identified
    • Whether RING1-YY1 interaction is direct or mediated by other PcG components unclear
  5. 2007 High

    The key catalytic function of RING1 was identified: monoubiquitination of H2A at K119, which enforces a poised RNA Pol II state at bivalent developmental genes in ES cells, providing the mechanistic basis for PRC1-mediated gene silencing.

    Evidence Conditional Ring1A/Ring1B knockout in mouse ES cells with ChIP for H2Aub, RNAP phospho-CTD, and transcriptional profiling

    PMID:18037880

    Open questions at the time
    • Relative contributions of Ring1A vs Ring1B to H2Aub at specific loci not fully resolved
    • Mechanism by which H2Aub restrains Pol II elongation not defined
  6. 2015 High

    RING1-mediated PRC1 repression was shown to be essential for limb development: Ring1A/B directly repress Meis2 in distal forelimb, and genetic removal of Meis2 partially rescues limb defects, establishing an epistatic developmental circuit.

    Evidence Conditional Ring1A/B knockout and Ring1A/B/Meis2 triple mutant mice with limb morphological and gene expression analysis

    PMID:26674308

    Open questions at the time
    • Additional PRC1 target genes contributing to limb patterning not comprehensively mapped
    • Whether RING1 catalytic activity versus scaffolding drives the phenotype unresolved
  7. 2017 High

    RING1 was discovered to ubiquitinate p53 independently of PRC1, promoting its proteasomal degradation and revealing a non-chromatin oncogenic mechanism distinct from its epigenetic silencing role.

    Evidence In vitro ubiquitination assay with RING domain mutagenesis, siRNA knockdown with cell cycle/apoptosis readouts

    PMID:29187402

    Open questions at the time
    • Ubiquitin chain type on p53 not specified
    • In vivo relevance for tumorigenesis not tested with genetic models
  8. 2018 High

    A patient-derived RING1 missense mutation (R95Q) revealed separation of function: the mutant retains general ubiquitin chain-forming activity but cannot monoubiquitinate H2A on nucleosomes, causing neurodevelopmental defects and establishing RING1 as a disease gene for neurodevelopmental disorder.

    Evidence In vitro nucleosome ubiquitination assay, patient cell H2AK119ub1 immunoblotting, CRISPR knock-in of ortholog in C. elegans with neuronal phenotyping

    PMID:29386386

    Open questions at the time
    • Structural basis for substrate-specific catalytic defect not determined
    • Full clinical spectrum of RING1 mutations unknown
  9. 2020 High

    Ring1b-mediated PRC1 silencing was shown to control ventral telencephalon patterning by directly repressing BMP and Wnt ligand loci, permitting Shh expression and ventral identity.

    Evidence Conditional Ring1A/B deletion in neuroepithelium, ChIP for Ring1B and H3K27me3 at BMP/Wnt loci, forced BMP/Wnt activation experiments

    PMID:33177537

    Open questions at the time
    • Whether Ring1a alone suffices for any ventral telencephalon patterning not tested
    • Downstream chromatin remodeling events at derepressed loci not characterized
  10. 2024 High

    Hypomorphic RING1 variants were shown to act dominantly by occupying target chromatin without catalyzing ubiquitination, thereby blocking access of functional PRC1 and impairing DNA damage repair and cell cycle progression in neural progenitors.

    Evidence ChIP-seq for H2AK119ub1, DNA damage repair assays, cell cycle analysis, and transcriptomics in human iPSC-derived NPCs with RING1 hypomorphic alleles

    PMID:39256363

    Open questions at the time
    • Specific DNA repair pathway(s) dependent on H2AK119ub1 not identified
    • Whether dominant-negative mechanism applies in non-neural tissues unknown
  11. 2025 High

    RING1 was found to catalyze K48-linked ubiquitination of GSDMD at specific lysines (K51, K168), promoting proteasomal degradation of GSDMD and suppressing pyroptosis during bacterial infection — a function entirely outside the chromatin/PcG paradigm.

    Evidence Co-IP, in vitro ubiquitination with GSDMD lysine mutagenesis, Ring1 KO mouse infection models, E3 ligase inhibitor PRT4165

    PMID:40369166

    Open questions at the time
    • How RING1 is recruited to GSDMD upon inflammasome activation not defined
    • Whether RING1 ubiquitinates other inflammasome components unknown

Open questions

Synthesis pass · forward-looking unresolved questions
  • Major unresolved questions include the structural basis for RING1's substrate selectivity between nucleosomal H2A, p53, and GSDMD, the mechanisms governing RING1 recruitment to non-chromatin substrates, and the full spectrum of human disease caused by RING1 variants.
  • No crystal structure of RING1 with nucleosome or non-histone substrate
  • Relative in vivo contribution of RING1 vs RNF2 at most genomic loci unresolved
  • Comprehensive genotype-phenotype correlation for RING1 mutations lacking

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0140096 catalytic activity, acting on a protein 5 GO:0140110 transcription regulator activity 5 GO:0016874 ligase activity 3 GO:0042393 histone binding 3
Localization
GO:0005634 nucleus 4 GO:0000228 nuclear chromosome 3
Pathway
R-HSA-74160 Gene expression (Transcription) 4 R-HSA-1266738 Developmental Biology 3 R-HSA-392499 Metabolism of proteins 3 R-HSA-4839726 Chromatin organization 3 R-HSA-168256 Immune System 1 R-HSA-5357801 Programmed Cell Death 1
Complex memberships
PRC1

Evidence

Reading pass · 14 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
1997 RING1 interacts with the Polycomb group proteins HPC (Pc homolog), BMI1, and HPH1, colocalizes with them in nuclear PcG domains, and acts as a transcriptional repressor when targeted to a reporter gene. Yeast two-hybrid screen, co-immunoprecipitation, immunofluorescence colocalization, reporter gene repression assay Molecular and cellular biology High 9199346
1999 RING1 self-associates and interacts directly with BMI1 through distinct domains; these interactions are mediated by separable protein regions. RING1 overexpression represses the PcG target gene En-2, upregulates c-jun and c-fos, and transforms mammalian cells (anchorage-independent growth, tumor formation in athymic mice). Directed yeast two-hybrid, in vitro protein-protein interaction, overexpression in mammalian cells, soft-agar colony assay, xenograft tumor formation Molecular and cellular biology High 9858531
2000 HPC3 (a novel Polycomb ortholog) physically binds RING1; this interaction requires the HPC3 C-box and is only detected in vivo with covalently modified forms of RING1. HPC3-RING1 complexes participate in long-range transcriptional silencing. Yeast two-hybrid, co-immunoprecipitation, reporter gene silencing assay The Journal of biological chemistry Medium 10825164
2004 RING1 interacts with the LIM domains of KyoT2 in yeast and mammalian cells; KyoT2 bridges RING1 and RBP-J into a three-molecule complex. RING1 overexpression together with KyoT2 inhibits Notch intracellular domain (NIC)-mediated transactivation of RBP-J, and this suppression is dependent on RING1 binding to KyoT2. Yeast two-hybrid, in vitro GST pulldown, co-immunoprecipitation, reporter gene transactivation assay with competitive displacement Nucleic acids research High 14999091
2004 Drosophila Ring/Sce is the functional ortholog of mammalian Ring1/Ring1A; it binds to ~100 polytene chromosome sites (70% overlapping other PcG proteins) and directly interacts with PcG proteins. Phenotypic rescue of Ring/Sce loss by murine Ring1/Ring1A demonstrates functional conservation. Genetic rescue experiments, polytene chromosome immunostaining, direct protein interaction assays Mechanisms of development High 15147763
2006 Ring1/Ring1A genetically interacts with YY1 in maintaining axial skeletal patterning; YY1 forms complexes with Ring1 and other PcG proteins (Rnf2, Bmi1) in GST pulldown experiments. Loss of Ring1 reduces penetrance of YY1 heterozygous homeotic transformations, establishing epistatic interaction. Genetic epistasis (double-mutant mice), GST pulldown in transfected cells Mechanisms of development Medium 16624538
2007 Ring1-mediated monoubiquitination of histone H2A enforces a poised RNA Pol II configuration (Ser5-phosphorylated) at bivalent developmental regulator genes in mouse ES cells. Conditional deletion of Ring1A and Ring1B leads to sequential loss of H2A ubiquitination, release of poised RNAP, and de-repression of these genes. Conditional genetic deletion (Ring1A/Ring1B KO), ChIP, transcriptional analysis, phospho-CTD immunostaining Nature cell biology High 18037880
2017 RING1 functions as an E3 ubiquitin ligase that directly interacts with and ubiquitinates p53, promoting its proteasomal degradation; this activity requires the RING domain of RING1 and is independent of its PRC1 role. Co-immunoprecipitation, in vitro ubiquitination assay, RING domain mutagenesis, siRNA knockdown with cell cycle and apoptosis readouts Cancer research High 29187402
2018 A de novo RING1 missense mutation (p.R95Q) in the catalytic RING domain retains general ubiquitin chain-forming activity but is specifically defective in monoubiquitylating histone H2A within nucleosomes, leading to decreased H2AK119ub1 in patient cells and neuronal migration/axon guidance defects when modeled in C. elegans spat-3. In vitro ubiquitination assay with nucleosome substrate, patient cell immunoblotting for H2AK119ub1, CRISPR knock-in in C. elegans with neuronal phenotype analysis Proceedings of the National Academy of Sciences of the United States of America High 29386386
2020 Ring1b (and Ring1a/Ring1b together) in neuroepithelial cells suppresses BMP and Wnt ligand gene expression in the ventral telencephalon via PcG-mediated H3K27me3; Ring1B directly binds BMP and Wnt ligand loci in the ventral region, allowing Shh expression and proper ventral telencephalon development. Conditional genetic deletion, ChIP for Ring1B and H3K27me3, in situ hybridization/qRT-PCR for Shh/BMP/Wnt ligands, forced BMP/Wnt activation Nature communications High 33177537
2015 RING1 proteins (RING1A and RING1B) bind and repress Meis2 (and Meis1) in prospective distal forelimb bud regions via PRC1; genetic deletion of Ring1A/B causes severe proximal-distal patterning defects, and additional deletion of Meis2 partially restores distal gene expression and limb formation. Conditional genetic deletion, genetic epistasis (Ring1A/B + Meis2 triple mutants), gene expression analysis Development (Cambridge, England) High 26674308
2017 CD147 interacts with RING1 through the CD147 transmembrane domain (identified by yeast two-hybrid); nuclear envelope-localized CD147 inhibits RING1's transcriptional repressor function and promotes melanoma cell migration. Yeast two-hybrid, co-immunoprecipitation, cell migration assay, overexpression/knockdown PloS one Low 28832687
2024 RING1 hypomorphic missense variants reduce H2AK119ub1 by occupying target loci without catalyzing ubiquitination (preventing access of catalytically active complexes), leading to delayed DNA damage repair and cell cycle progression in neural progenitor cells, without major effects on gene expression or NPC differentiation. In vitro neurodevelopment model, ChIP-seq for H2AK119ub1, DNA damage repair assays, cell cycle analysis, transcriptomics in RING1 hypomorphic vs RNF2 hypomorphic NPCs Nature communications High 39256363
2025 RING1 directly interacts with Gasdermin D (GSDMD) and catalyzes K48-linked ubiquitination at GSDMD K51 and K168 residues, promoting proteasomal degradation of GSDMD and thereby negatively regulating pyroptosis and inflammatory response to bacterial infection. Co-immunoprecipitation, in vitro ubiquitination assay with site-directed mutagenesis of GSDMD lysine residues, Ring1 knockout mouse infection models, RING1 E3 ligase inhibitor (PRT4165) Cell death and differentiation High 40369166

Source papers

Stage 0 corpus · 41 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2007 Ring1-mediated ubiquitination of H2A restrains poised RNA polymerase II at bivalent genes in mouse ES cells. Nature cell biology 508 18037880
1997 RING1 is associated with the polycomb group protein complex and acts as a transcriptional repressor. Molecular and cellular biology 165 9199346
2006 Polycomb-group oncogenes EZH2, BMI1, and RING1 are overexpressed in prostate cancer with adverse pathologic and clinical features. European urology 154 17134822
1999 RING1 interacts with multiple Polycomb-group proteins and displays tumorigenic activity. Molecular and cellular biology 106 9858531
2011 The pepper E3 ubiquitin ligase RING1 gene, CaRING1, is required for cell death and the salicylic acid-dependent defense response. Plant physiology 91 21628629
2018 Long non-coding RNA C5orf66-AS1 promotes cell proliferation in cervical cancer by targeting miR-637/RING1 axis. Cell death & disease 81 30518760
2012 A novel target of microRNA-29, Ring1 and YY1-binding protein (Rybp), negatively regulates skeletal myogenesis. The Journal of biological chemistry 81 22661705
2008 RING1 E3 ligase localizes to plasma membrane lipid rafts to trigger FB1-induced programmed cell death in Arabidopsis. The Plant journal : for cell and molecular biology 80 18643987
2000 HPC3 is a new human polycomb orthologue that interacts and associates with RING1 and Bmi1 and has transcriptional repression properties. The Journal of biological chemistry 60 10825164
2010 Molecular chaperone-mediated rescue of mitophagy by a Parkin RING1 domain mutant. Human molecular genetics 59 20889486
2017 The E3 Ligase RING1 Targets p53 for Degradation and Promotes Cancer Cell Proliferation and Survival. Cancer research 55 29187402
2004 RING1 inhibits transactivation of RBP-J by Notch through interaction with LIM protein KyoT2. Nucleic acids research 55 14999091
2017 Structural Studies of HHARI/UbcH7∼Ub Reveal Unique E2∼Ub Conformational Restriction by RBR RING1. Structure (London, England : 1993) 46 28552575
2019 Down-regulation of lncRNA XIST inhibits cell proliferation via regulating miR-744/RING1 axis in non-small cell lung cancer. Clinical science (London, England : 1979) 39 31292221
2004 The Drosophila Polycomb group gene Sex combs extra encodes the ortholog of mammalian Ring1 proteins. Mechanisms of development 35 15147763
2018 De novo mutation in RING1 with epigenetic effects on neurodevelopment. Proceedings of the National Academy of Sciences of the United States of America 33 29386386
2020 The Polycomb group protein Ring1 regulates dorsoventral patterning of the mouse telencephalon. Nature communications 32 33177537
2016 RING1 and YY1 binding protein suppresses breast cancer growth and metastasis. International journal of oncology 26 27748911
1997 Physical mapping 220 kb centromeric of the human MHC and DNA sequence analysis of the 43-kb segment including the RING1, HKE6, and HKE4 genes. Genomics 26 9205114
2016 Versatile members of the DNAJ family show Hsp70 dependent anti-aggregation activity on RING1 mutant parkin C289G. Scientific reports 25 27713507
2015 Interaction between RING1 (R1) and the Ubiquitin-like (UBL) Domains Is Critical for the Regulation of Parkin Activity. The Journal of biological chemistry 24 26631732
2006 Homeotic transformations of the axial skeleton of YY1 mutant mice and genetic interaction with the Polycomb group gene Ring1/Ring1A. Mechanisms of development 23 16624538
1978 Apparently non-deleted ring-1 chromosome and extreme growth failure in a mentally retarded girl. Clinical genetics 21 679524
1996 Physical mapping of the Ring1, Ring2, Ke6, Ke4, Rxrb, Col11a2, and RT1.Hb genes in the rat major histocompatibility complex. Immunogenetics 17 8662089
2019 Ring1 promotes the transformation of hepatic progenitor cells into cancer stem cells through the Wnt/β-catenin signaling pathway. Journal of cellular biochemistry 15 31696964
2019 Evolving Role of RING1 and YY1 Binding Protein in the Regulation of Germ-Cell-Specific Transcription. Genes 15 31752312
2020 Identification of loci and candidate gene GmSPX-RING1 responsible for phosphorus efficiency in soybean via genome-wide association analysis. BMC genomics 14 33076835
2015 RING1 proteins contribute to early proximal-distal specification of the forelimb bud by restricting Meis2 expression. Development (Cambridge, England) 14 26674308
2024 Architecture of the RNF1 complex that drives biological nitrogen fixation. Nature chemical biology 13 38890433
2014 Polycomb group oncogene RING1 is over-expressed in non-small cell lung cancer. Pathology oncology research : POR 13 24414991
2022 Rnf1 is the primary electron source to nitrogenase in a high-ammonium-accumulating strain of Azotobacter vinelandii. Applied microbiology and biotechnology 11 35804159
2017 Nuclear envelope-distributed CD147 interacts with and inhibits the transcriptional function of RING1 and promotes melanoma cell motility. PloS one 7 28832687
2022 The E3 ubiquitin ligase RING1 interacts with COP9 Signalosome Subunit 4 to positively regulate resistance to root-knot nematodes in Solanum lycopersicum L. Plant science : an international journal of experimental plant biology 6 35659944
2024 RING1 missense variants reveal sensitivity of DNA damage repair to H2A monoubiquitination dosage during neurogenesis. Nature communications 4 39256363
2025 RING1 dictates GSDMD-mediated inflammatory response and host susceptibility to pathogen infection. Cell death and differentiation 2 40369166
2014 A RING to rule them all: RING1 as silencer and activator. Developmental cell 2 24434133
2026 RING1 and BMI1 catalytic activities play distinct roles in plant PcG-mediated gene regulation. The Plant cell 1 41460774
2024 RING1 Inhibition Has a Cell-Specific Antitumoral Role by Promoting Autophagy in Endometrial Cancer Cells. Cellular physiology and biochemistry : international journal of experimental cellular physiology, biochemistry, and pharmacology 1 38219048
2016 Spatiotemporal Patterns of RING1 Expression after Rat Spinal Cord Injury. Neurochemical research 1 28032293
2025 The RING1 subunit of Polycomb Repressive Complex 1 monoubiquitinates histone H2A and mediates repression independently of Polycomb Repressive Complex 2 in the model diatom Phaeodactylum tricornutum. The New phytologist 0 41346180
2022 Generation of an RNF1-deficient human pluripotent stem cell line using CRISPR/Cas9 technology. Stem cell research 0 35567848