| 1994 |
p21 directly inhibits PCNA-dependent DNA replication by blocking PCNA's ability to activate DNA polymerase delta; this results from a direct protein-protein interaction between p21 and PCNA, demonstrated using SV40 DNA replication in vitro. |
In vitro SV40 DNA replication reconstitution assay; direct binding assay |
Nature |
High |
7911228
|
| 1994 |
GADD45 (Gadd45) binds directly to PCNA, stimulates DNA excision repair in vitro, and inhibits entry of cells into S phase; the interaction is mediated by the N-terminal 94 amino acids of Gadd45 and maps to multiple regions of PCNA including its C-terminus. |
Co-immunoprecipitation, yeast two-hybrid, peptide ELISA, in vitro repair assay |
Science |
High |
7784094 7973727
|
| 1996 |
Crystal structure of human PCNA complexed with a 22-residue C-terminal peptide of p21(WAF1/CIP1) at 2.6 Å resolution reveals p21 binds in a 1:1 stoichiometry per PCNA monomer via beta-sheet formation with the interdomain connector loop (IDCL), masking elements required for other polymerase assembly components while maintaining the intact trimeric ring. |
X-ray crystallography at 2.6 Å |
Cell |
High |
8861913
|
| 1997 |
DNA-(cytosine-5) methyltransferase (DNMT1/MCMT) binds PCNA via a specific motif (amino acids 163–174 of MCMT); this interaction occurs at replication foci in intact cells and can be disrupted by a p21(WAF1) peptide, suggesting p21 regulates DNA methylation by blocking MCMT access to PCNA. |
Co-immunoprecipitation, cell imaging at replication foci, peptide competition assay |
Science |
High |
9302295
|
| 1996 |
PCNA is required for DNA mismatch repair (MMR) at a step preceding DNA resynthesis; PCNA interacts with yeast MLH1 and MSH2 in two-hybrid assays; PCNA mutations elevate dinucleotide-repeat mutation rate epistatically with MLH1; p21 peptide inhibits MMR in human cell extracts and activity is restored by adding PCNA. |
Yeast two-hybrid, genetic epistasis, in vitro MMR assay with human cell extracts, p21 peptide inhibition |
Cell |
High |
8858149
|
| 2002 |
PCNA is mono-ubiquitinated at K164 by RAD6/RAD18, modified by K63-linked poly-ubiquitination requiring MMS2/UBC13/RAD5, and sumoylated by UBC9—all at the same lysine residue. These modifications differentially affect DNA damage resistance and the RAD6-dependent post-replicative repair pathway; ubiquitination is conserved in yeast and humans. |
Biochemical modification assays, genetic epistasis in yeast, mass spectrometry, Western blot in yeast and human cells |
Nature |
High |
12226657
|
| 2004 |
PCNA is monoubiquitinated at K164 following UV irradiation in human cells in an hRAD18-dependent manner; monoubiquitinated PCNA specifically interacts with DNA polymerase eta (poleta) via two motifs in poleta, providing a mechanism for the polymerase switch from replicative to translesion synthesis polymerase. |
Co-immunoprecipitation, Western blot, UV irradiation assays, domain mapping, interaction with purified proteins |
Molecular cell |
High |
15149598
|
| 2004 |
RAD18/RAD6 monoubiquitinate PCNA in vitro; RAD18 guides poleta to replication-stalling sites through direct physical interaction with poleta and through PCNA monoubiquitination; poleta preferentially interacts with monoubiquitinated PCNA whereas polδ does not. |
In vitro ubiquitination assay with purified proteins, co-immunoprecipitation, UV-induced focus formation in RAD18-knockout cells, Western blot |
The EMBO journal |
High |
15359278
|
| 2005 |
USP1 deubiquitinates monoubiquitinated PCNA, acting as a safeguard against error-prone translesion synthesis. UV irradiation triggers USP1 autocleavage at a diglycine motif, inactivating the DUB and allowing monoubiquitinated PCNA to accumulate and activate TLS. |
In vitro DUB assay, UV irradiation Western blot, autocleavage mapping, RNAi knockdown |
Nature cell biology |
High |
16531995
|
| 2005 |
Y-family TLS polymerases (poleta, poliota) contain ubiquitin-binding domains (UBM and UBZ) required for binding ubiquitin, accumulation in replication factories, and interaction with monoubiquitinated PCNA. The UBZ domain of poleta is essential for restoring normal UV response in XP-V cells. |
Domain identification and mutagenesis, binding assays, cellular focus formation, complementation of XP-V cells |
Science |
High |
16357261
|
| 2000 |
FEN1 interacts with PCNA through two distinct modes: in solution, FEN1 interacts mainly through the PCNA interdomain connector loop (IDCL); when PCNA encircles DNA, the C-terminal domain of PCNA is required for productive FEN1 stimulation. An FF→GA mutation in FEN1's PCNA-interaction domain abrogates both modes and causes replication and repair defects in vivo. |
Yeast PCNA mutant analysis, in vitro activity assays, DNA-coupled PCNA retention assay, in vivo phenotypic analysis |
The EMBO journal |
High |
10899134
|
| 2001 |
PCNA binds to hMutSα (via hMSH6 subunit) and hMutSβ (via hMSH3 subunit) through a conserved PIP-box motif Qxx[LI]xx[FF] in the N-terminal domains. A deletion variant of hMutSα lacking this motif fails to interact with PCNA in vitro and cannot restore MMR in hMSH6-deficient cells. hMSH6 and hMSH3 colocalize with PCNA at replication foci. |
In vitro binding assay, co-localization by immunofluorescence, MMR complementation assay |
Genes & development |
High |
11274057
|
| 2003 |
PCNA in the archaeon Sulfolobus solfataricus is a heterotrimer of three distinct subunits (PCNA1, 2, 3) that assembles in a defined order. The heterotrimer (but not individual subunits) stimulates DNA polymerase, DNA ligase I, and FEN1, with distinct subunits contacting each enzyme, imposing defined architecture at the lagging strand fork. |
Biochemical reconstitution, activity stimulation assays, protein interaction mapping |
Molecular cell |
High |
12535540
|
| 2004 |
XRCC1 co-localizes with PCNA at DNA replication foci in S phase and physically interacts with PCNA both in vivo and in vitro; the interaction is direct and mediated by XRCC1 residues 166–310. This suggests PCNA sequesters XRCC1 to replication factories to facilitate single-strand break repair in S phase. |
Co-immunoprecipitation, FRET analysis, in vitro binding assay, immunofluorescence co-localization |
Nucleic acids research |
High |
15107487
|
| 2005 |
The Ctf18-RFC complex (containing Ctf18, Dcc1, Ctf8, and small RFC subunits) efficiently unloads PCNA from DNA in an ATP hydrolysis-dependent manner. When single-stranded DNA is coated by RPA, Ctf18-RFC unloading activity predominates over loading. Neither RFC itself nor Rad24- or Elg1-containing complexes catalyze significant PCNA unloading. |
In vitro PCNA loading/unloading assay with purified yeast proteins, ATP hydrolysis requirement testing, RPA specificity assay |
Molecular and cellular biology |
High |
15964801
|
| 2005 |
PCNA dynamics at replication foci and DNA damage sites differ: GFP-PCNA shows a dynamic equilibrium at replication foci, but a longer residence time at UV-damaged regions. Initial PCNA recruitment to damaged sites is dependent on nucleotide excision repair (NER). A ubiquitination-defective PCNA mutant (K164R) shows significantly shorter residence time at damaged areas, linking PCNA ubiquitination to its retention at damage sites for translesion synthesis. |
FRAP (fluorescence recovery after photobleaching), live-cell imaging with GFP-PCNA, UV laser damage, NER-mutant cell lines, ubiquitination mutant analysis |
Molecular and cellular biology |
High |
16227586
|
| 2006 |
PCNA is phosphorylated on Tyr211 by nuclear EGFR, which stabilizes chromatin-bound PCNA protein and maintains its replication functions on chromatin. EGFR tyrosine kinase activity is required for this modification. |
In vivo phosphorylation assay, chromatin fractionation, EGFR kinase-dead mutants, co-immunoprecipitation, mass spectrometry |
Nature cell biology |
High |
17115032
|
| 2006 |
DNA polymerase zeta (Polzeta)-dependent spontaneous mutagenesis in replication mutants requires ubiquitination and sumoylation of K164 of PCNA. A PCNA mutant defective for functional interactions with Polzeta (but not monoubiquitination by Rad6/Rad18) reveals a separate role for PCNA in regulating Polzeta mutagenic activity beyond K164 modification. |
Genetic epistasis in yeast, PCNA mutant analysis, mutagenesis assays |
The EMBO journal |
High |
16957771
|
| 2006 |
PCNA ubiquitination at K164 is required for immunoglobulin hypermutation in vertebrates: PCNA(K164R) mutation in DT40 B cells strongly reduces AID-dependent single-nucleotide substitutions in the Ig light-chain locus, implicating the PCNA-ubiquitin pathway in recruiting error-prone polymerases for somatic hypermutation. |
PCNA K164R knock-in in DT40 cells, sequencing of Ig locus, RAD18-mutant analysis |
PLoS biology |
High |
17105346
|
| 2008 |
SUMO modification of yeast PCNA at K164 is stimulated by DNA loading of PCNA: loading onto DNA is a prerequisite for sumoylation in vivo and greatly stimulates modification in vitro. DNA binding by the ligase Siz1 is not strictly required; the stimulatory effect of DNA is mainly attributable to DNA binding of PCNA itself, implying a conformational change upon loading. |
In vitro sumoylation assay, in vivo genetic analysis, S phase-specific modification assay |
The EMBO journal |
High |
18701921
|
| 2008 |
Chk1 regulates DNA damage-induced PCNA ubiquitination by stabilizing Claspin, which in turn regulates RAD18 binding to chromatin. This function requires Claspin but not ATR; Timeless (a Claspin-associating protein) is also required for efficient PCNA ubiquitination. |
RNAi knockdown, Western blot for PCNA ubiquitination, chromatin fractionation, epistasis analysis |
Genes & development |
High |
18451105
|
| 2009 |
hABH2 interacts with PCNA via a novel motif called APIM (AlkB homologue 2 PCNA-interacting motif), distinct from the canonical PIP box. APIM is present in >200 proteins involved in DNA maintenance, transcription, and cell cycle regulation; a cell-penetrating APIM peptide increases cellular sensitivity to cytostatic agents. |
Pull-down assays, co-localization at replication foci, APIM peptide functional assay, bioinformatic identification |
The Journal of cell biology |
High |
19736315
|
| 2009 |
Defects in DNA ligase I (cdc9-1 mutant in yeast) trigger PCNA ubiquitylation at a novel site, Lys107, through a pathway requiring the E2 variant Mms2, E2 Ubc4, and E3 Rad5—distinct from the K164 ubiquitylation pathway (which uses Rad6/Rad18). PCNA K107R mutation renders DNA ligase I-deficient cells inviable. This modification is conserved in humans. |
Yeast genetics, Western blot with PCNA-K107R mutant, E2/E3 epistasis, human cell validation |
Nature cell biology |
High |
20010813
|
| 2010 |
FEN1 is methylated at Arg192 (primarily) by an arginine methyltransferase; this methylation suppresses FEN1 phosphorylation at Ser187. Only the methylated (not phosphorylated) form of FEN1 strongly interacts with PCNA, ensuring correct timing of Okazaki fragment maturation. Mutations disrupting methylation cause unscheduled phosphorylation, failure to localize to replication/repair foci, defective Okazaki fragment maturation, and increased genomic mutations. |
Mass spectrometry, in vitro methylation/phosphorylation assays, PCNA interaction assays, immunofluorescence, cell cycle and mutation analysis |
Nature chemical biology |
High |
20729856
|
| 2011 |
CRL4(Cdt2) E3 ubiquitin ligase degrades substrates (Cdt1, p21, Set8) by coupling proteolysis to substrate display on chromatin-bound PCNA via PIP degrons. This mechanism prevents rereplication in S phase. |
Biochemical reconstitution of substrate degradation, domain mapping, cell-based assays |
Genes & development |
High |
21828267
|
| 2012 |
SETD8 methyltransferase methylates PCNA at K248; this modification stabilizes PCNA expression and significantly enhances the interaction between PCNA and FEN1. Loss of PCNA K248 methylation retards Okazaki fragment maturation, slows DNA replication, and increases DNA damage sensitivity. |
In vitro methylation assay, PCNA K248R/SETD8 knockdown, Okazaki fragment maturation assay, co-immunoprecipitation, Western blot |
Cancer research |
High |
22556262
|
| 2012 |
The Srs2 C-terminal domain contains tandem receptor motifs—one binding PCNA and one binding SUMO—both of which are required to specifically recognize SUMO-modified PCNA. This structural mechanism explains how Srs2 is recruited specifically to SUMO-PCNA at replication forks to inhibit homologous recombination. |
Crystal structure, NMR, biochemical binding assays, functional analysis in yeast |
Nature |
High |
22382979
|
| 2013 |
PCNA promotes processive DNA end resection by Exo1: after DNA damage, PCNA loads onto double-strand breaks and directly interacts with Exo1, tethering it to the DNA substrate and conferring processivity to Exo1 resection in a mechanism analogous to its role in DNA replication. |
Mammalian cell experiments, Xenopus nuclear extracts, purified protein in vitro assays, co-immunoprecipitation |
Nucleic acids research |
High |
23939618
|
| 2014 |
CBP (and less efficiently p300) acetylate PCNA at Lys13, 14, 77, and 80, promoting removal of chromatin-bound PCNA and its proteasomal degradation after nucleotide excision repair (NER). Mutation of these lysines impairs DNA replication and repair, enhances UV sensitivity, and prevents PCNA degradation after damage. |
In vitro acetylation assay, PCNA mutant cell lines, UV sensitivity assays, Western blot, proteasome inhibitor experiments |
Nucleic acids research |
High |
24939902
|
| 2014 |
A hypomorphic missense mutation in human PCNA (p.Ser228Ile) causes a DNA repair disorder with features of neurodegeneration and photosensitivity. The mutation does not affect protein levels or DNA replication, but profoundly alters PCNA's interaction with FEN1 and DNA Ligase 1, and impairs UV survival and RNA synthesis recovery. |
Patient cell analysis, protein interaction assays, UV survival assays, RNA synthesis recovery assay |
The Journal of clinical investigation |
High |
24911150
|
| 2014 |
SIVA1 constitutively interacts with PCNA via a PIP motif and serves as a molecular bridge recruiting RAD18 to PCNA. SIVA1 knockdown compromises RAD18-dependent PCNA monoubiquitination and poleta focus formation, increasing UV sensitivity. |
Affinity purification, co-immunoprecipitation, RNAi knockdown, UV sensitivity and focus formation assays |
The Journal of cell biology |
High |
24958773
|
| 2015 |
Phosphorylation of PCNA at Tyr211 by EGFR inhibits DNA mismatch repair by altering PCNA's interaction with MutSα and MutSβ and interfering with PCNA-dependent activation of MutLα endonuclease; Y211-phosphorylated PCNA also induces nucleotide misincorporation during DNA synthesis. |
In vitro MMR assay, nucleotide incorporation assay, co-immunoprecipitation, phospho-PCNA mutants |
Proceedings of the National Academy of Sciences of the United States of America |
High |
25825764
|
| 2016 |
MutSα inhibits PCNA unloading through its PCNA-interacting motif, thereby extending the post-replicative window permissive to strand-specific MMR. DNA-bound PCNA itself serves as the strand discrimination signal in the absence of strand discontinuities. |
Xenopus egg extract reconstitution, PCNA unloading assay, MMR assay, PIP-box mutant MutSα |
eLife |
High |
27402201
|
| 2016 |
HUWE1 (HECT ubiquitin ligase) interacts with PCNA at stalled replication forks and is essential for genomic stability by promoting replication of damaged DNA. HUWE1-knockout cells exhibit replication defects and DNA breakage, and HUWE1 mono-ubiquitinates H2AX to promote signaling at stalled forks. |
Co-immunoprecipitation, HUWE1 knockout cells, replication fork assays, H2AX ubiquitination assay |
EMBO reports |
High |
27146073
|
| 2016 |
FANCM interacts with PCNA via a conserved PIP-box; this interaction is stimulated by replication stress. A FANCM PIP-box mutant is defective in promoting replication traverse of interstrand crosslinks and in facilitating FANCD2 monoubiquitination. |
Co-immunoprecipitation, PIP-box mutant analysis, replication traverse assay, FANCD2 ubiquitination assay |
Nucleic acids research |
High |
26825464
|
| 2016 |
PCNA forms 'tool belt' complexes and 'Rev1 bridge' architectures during translesion synthesis, with PCNA simultaneously bound to two non-classical polymerases (Rev1 and polη). These complexes are dynamic and can interconvert architecture without dissociation. |
Single-molecule TIRF microscopy |
Nucleic acids research |
High |
27325737
|
| 2016 |
SDE2 is cleaved at a diglycine motif via PCNA-interacting PIP-box and deubiquitinase activity; the cleaved SDE2 negatively regulates UV-induced PCNA monoubiquitination and counteracts replication stress. Cleaved SDE2 is degraded by CRL4CDT2 in a cell cycle- and damage-dependent manner; failure to degrade SDE2 impairs S phase progression. |
Mutant analysis, in vivo cleavage assay, PCNA interaction studies, ubiquitination assays, cell cycle analysis |
PLoS genetics |
High |
27906959
|
| 2016 |
REV1 promotes PCNA monoubiquitylation after UV irradiation through enhanced interaction with ubiquitylated RAD18, facilitating release of non-ubiquitylated RAD18 and its recruitment to chromatin for TLS. |
Co-immunoprecipitation, Western blot, UV/HU/MMC/MMS treatment assays, RAD18 ubiquitylation analysis |
Journal of cell science |
Medium |
26795561
|
| 2017 |
Crystal structure of human PCNA bound to DNA reveals a double patch of basic residues within the ring channel arranged in a right-hand spiral matching B-DNA pitch. PCNA slides via a 'cogwheel' mechanism with short-lived polar interactions maintaining invariant orientation on DNA. Mutation of PCNA-DNA interface residues impairs initiation of DNA synthesis by polymerase δ. |
X-ray crystallography, NMR, molecular dynamics simulations, functional mutagenesis |
Nature communications |
High |
28071730
|
| 2018 |
PCNA unloading by Elg1 (yeast ATAD5 homolog) is required to coordinate replication-coupled nucleosome assembly with DNA replication forks in order to maintain heterochromatic silencing of HML and HMR through S phase. |
Yeast genetic analysis, silencing assays, Elg1 mutant phenotype analysis |
Proceedings of the National Academy of Sciences of the United States of America |
High |
29440488
|
| 2019 |
ATAD5-RLC (the human RFC-like complex) possesses potent PCNA unloading activity; ATPase motif and collar domain of ATAD5 are crucial. ATAD5-RLC can unload ubiquitinated PCNA and does so through a single intermediate state before ATP hydrolysis, whereas RFC loads PCNA through two intermediate states separated by ATP hydrolysis. FEN1 can inhibit PCNA unloading by the yeast ATAD5 homolog Elg1. |
In vitro PCNA loading/unloading assays, single-molecule measurements, ATPase mutant analysis |
Nature communications |
High |
31160570
|
| 2019 |
PCNA stimulates the catalytic (nucleotide incorporation) rate of DNA polymerase delta by >10-fold, beyond its role as a processivity factor. A yeast PCNA mutant (DD41,42AA) shows substantially less stimulation of Pol δ nucleotide incorporation rate, identifying the relevant PCNA face. |
Quench-flow kinetic measurements, EMSA, fluorescence anisotropy, PCNA mutant analysis |
Nucleic acids research |
High |
30605530
|
| 2019 |
PCNA expressed on the surface of tumor cells acts as an inhibitory ligand for the NK cell receptor NKp44-isoform1, representing an innate immune checkpoint. An anti-PCNA mAb (14-25-9) blocks this interaction, increases NK cell IFNγ release and cytotoxic activity, and inhibits tumor growth in PDX mouse models. |
FACS-based receptor-ligand binding assay, NK cytotoxicity assay, ELISA, in vivo PDX mouse model |
Cancer immunology research |
High |
31164357
|
| 2022 |
Cryo-EM structures show human DNA Ligase 1 (Lig1) recruits PCNA to nicked DNA using two PIP motifs (PIPN-term and PIPDBD). After assembly as two-stack rings around DNA, PIPN-term is released and only PIPDBD is required for ligation. PCNA forms a toolbelt with FEN1 on nicked DNA, recruiting Lig1 to an unoccupied PCNA monomer to drive the FEN1-to-Lig1 substrate handoff during Okazaki fragment maturation. |
Cryo-EM structure determination, functional mutagenesis, biochemical ligation and binding assays |
Nature communications |
High |
36539424
|
| 2005 |
Two PCNA homotrimers can form a back-to-back doublet complex; Arg5 and Lys110 on the PCNA back face are contact points. A PCNA double trimer (but not a homotrimer alone) can simultaneously accommodate chromatin assembly factor-1 (CAF-1) and polymerase delta, suggesting this architecture couples chromatin remodeling with DNA replication. |
Cell extracts and purified protein doublet formation assay, mutation analysis, peptide inhibition, co-binding assay |
The Journal of biological chemistry |
Medium |
15805117
|
| 2011 |
A FEN1 point mutation (F343A/F344A, FFAA) specifically abolishing the FEN1-PCNA interaction causes defects in RNA primer removal and long-patch BER, resulting in DNA breaks, Chk1 activation, and near-tetraploid aneuploidy. FFAA mutant mice develop aneuploidy-associated cancer at high frequency. |
Knock-in mouse model, biochemical repair assays, chromosomal analysis, Chk1 inhibitor rescue |
Cell research |
High |
21383776
|
| 2016 |
TRAIP encodes a PCNA-interacting protein (via a PIP box) that migrates to stalled replication forks. Inactivation of TRAIP or its PCNA interaction compromises replication fork recovery and progression, and causes chromosome instability. |
Co-immunoprecipitation, PIP-box mutant analysis, replication fork assays, chromosome instability assay |
Cell discovery |
Medium |
27462463
|