| 1997 |
PCNA forms a toroidal (ring-shaped) homotrimeric structure that encircles double-stranded DNA and can slide bidirectionally along the duplex, functioning as the processivity factor for DNA polymerase delta and epsilon by tethering the polymerase catalytic unit to the DNA template. |
Structural and biochemical studies; review of crystallographic and functional data |
Oncogene |
High |
9038370
|
| 2000 |
PCNA mutations that reduce binding to chromatin assembly factor 1 (CAF-1) in vitro also alter chromatin association of the CAF-1 large subunit in vivo, demonstrating that PCNA participates in inheritance of epigenetic chromatin structures during S phase through at least two mechanisms including CAF-1 recruitment. |
Yeast genetics (silencing assays with PCNA mutants pol30-6, pol30-8, pol30-79), in vitro binding assays, chromatin association assays |
Nature |
High |
11089978
|
| 2001 |
PCNA binds directly to hMSH6 and hMSH3 subunits of the human mismatch repair factors hMutSα and hMutSβ via a conserved PIP-box motif (Qxx[LI]xx[FF]) in the N-terminal domains; deletion of this motif abolishes PCNA interaction in vitro and eliminates mismatch repair activity in hMSH6-deficient cells, and hMSH6/hMSH3 co-localize with PCNA at replication foci. |
Co-immunoprecipitation, in vitro binding assays, mismatch repair complementation assays, immunofluorescence co-localization |
Genes & development |
High |
11274057
|
| 2003 |
The archaeal PCNA from Sulfolobus solfataricus is a heterotrimer of three distinct subunits (PCNA1, 2, 3) that assembles in a defined orientation; distinct PCNA subunits contact DNA polymerase, DNA ligase I, and FEN1 respectively, imposing defined architecture at the lagging strand fork and coupling DNA synthesis with Okazaki fragment maturation. |
Biochemical reconstitution, activity assays with individual PCNA subunits and heterotrimers, protein interaction mapping |
Molecular cell |
High |
12535540
|
| 2004 |
PCNA is loaded onto primed DNA template-primer junctions in an ATP-dependent process by the heteropentameric RFC complex; loading is mechanistically distinct from prokaryotic clamp loaders and involves multiple stepwise ATP-binding events. |
Biochemical reconstitution, ATP hydrolysis assays, mechanistic dissection of RFC-PCNA loading |
Progress in nucleic acid research and molecular biology |
High |
15210332
|
| 2004 |
XRCC1 physically interacts with PCNA; the interaction is mediated by residues 166–310 of XRCC1, and XRCC1 co-localizes with PCNA at DNA replication foci exclusively in S phase, suggesting PCNA sequesters XRCC1 to replication factories to facilitate single-strand break repair. |
Co-immunoprecipitation, FRET analysis, in vitro binding with XRCC1 deletion mutants, immunofluorescence co-localization |
Nucleic acids research |
High |
15107487
|
| 2005 |
The Ctf18-RFC complex functions as an efficient PCNA unloader in an ATP hydrolysis-dependent manner; unloading is strongly favored over loading when the ssDNA template is coated by RPA (but not mutant RPA or heterologous SSB), separating PCNA unloading from the sister chromatid cohesion function of Ctf18-RFC. |
In vitro reconstitution with purified proteins, PCNA loading/unloading assays, ATP hydrolysis assays |
Molecular and cellular biology |
High |
15964801
|
| 2005 |
PCNA dynamics at replication foci and UV-damaged sites differ: PCNA at replication foci shows rapid exchange between bound and freely mobile nucleoplasmic pools, whereas PCNA at UV-damaged sites has a significantly longer residence time. Initial PCNA recruitment to damaged sites is dependent on nucleotide excision repair, and a ubiquitination-deficient PCNA mutant (K164R) shows shorter residence time at damaged areas, linking ubiquitination to PCNA retention at damage. |
Live cell imaging with GFP-hPCNA, FRAP (fluorescence recovery after photobleaching), local UV irradiation, use of NER-deficient and PCNA ubiquitination mutant cell lines |
Molecular and cellular biology |
High |
16227586
|
| 2006 |
PCNA is phosphorylated on Tyr211 by nuclear EGFR; this phosphorylation stabilizes chromatin-bound PCNA protein and is required for maintaining PCNA function on chromatin. |
In vivo phosphorylation assays, kinase activity assays, chromatin fractionation, mutation analysis, nuclear EGFR co-immunoprecipitation |
Nature cell biology |
High |
17115032
|
| 2006 |
PCNA ubiquitination at K164 (triggered by Rad18) promotes error-prone immunoglobulin somatic hypermutation in vertebrate B cells; PCNA(K164R) mutation and Rad18 deficiency both strongly reduce AID-dependent single-nucleotide substitutions at the Ig light-chain locus, indicating the PCNA-ubiquitin pathway is exploited for hypermutation through recruitment of error-prone DNA polymerases. |
Genetic analysis of DT40 B cell lines with PCNA K164R and Rad18 mutations, Ig hypermutation assays |
PLoS biology |
High |
17105346
|
| 2008 |
Sumoylation of yeast PCNA by the ligase Siz1 is strongly stimulated by loading of PCNA onto DNA; DNA binding by PCNA itself (rather than by Siz1) accounts for the stimulatory effect, indicating that a conformational or property change in PCNA upon DNA loading enhances its capacity to be sumoylated. |
In vitro sumoylation assays with purified components, in vivo sumoylation assays in S. cerevisiae, PCNA mutant analysis |
The EMBO journal |
High |
18701921
|
| 2008 |
Chk1, independently of ATR, regulates DNA damage-induced PCNA monoubiquitination by stabilizing Claspin, which in turn regulates Rad18 binding to chromatin; Timeless (a Claspin-associated protein) is also required for efficient PCNA ubiquitination. |
siRNA knockdown of Chk1, Claspin, and Timeless; chromatin immunoprecipitation; epistasis analysis of Rad18 chromatin binding |
Genes & development |
Medium |
18451105
|
| 2008 |
RNF8 can monoubiquitinate PCNA with UbcH5c and polyubiquitinate PCNA with Ubc13/Uev1a in vitro; RNF8 depletion suppresses UV- and MNNG-stimulated PCNA monoubiquitination in vivo, revealing an RNF8-dependent pathway for PCNA ubiquitination in the DNA damage tolerance response. |
In vitro ubiquitination assays, siRNA depletion of RNF8, in vivo PCNA ubiquitination analysis after DNA damage |
Cell cycle (Georgetown, Tex.) |
Medium |
18948756
|
| 2009 |
DNA ligase I deficiency in S. cerevisiae triggers PCNA ubiquitylation at Lys107 (distinct from the damage-induced Lys164 site); this modification requires E2 Mms2/Ubc4 and E3 Rad5, not Rad6/Rad18. Cells with PCNAK107R mutation are inviable in a ligase I-deficient background, demonstrating that Lys107 ubiquitylation is essential for the DNA damage response to Okazaki fragment ligation defects. Analogous PCNA ubiquitylation in response to DNA ligase I deficiency is conserved in humans. |
Yeast genetic analysis, in vivo ubiquitylation assays, epistasis with E2/E3 mutants, human cell experiments |
Nature cell biology |
High |
20010813
|
| 2009 |
hABH2 (AlkB homologue 2) interacts with post-translationally modified PCNA via a novel PCNA-interacting motif termed APIM (AlkB homologue 2 PCNA-interacting motif), distinct from the canonical PIP-box; APIM is present in >200 other proteins involved in DNA maintenance and verified functional in at least five of them. |
Co-immunoprecipitation, pulldown assays, identification and functional verification of APIM in multiple proteins, cellular sensitivity assays with APIM-peptide |
The Journal of cell biology |
Medium |
19736315
|
| 2011 |
CRL4(Cdt2) E3 ubiquitin ligase couples proteolysis to DNA synthesis via display of substrate degrons on chromatin-bound PCNA; substrates including Cdt1, p21, and Set8 are recruited through PCNA interactions and ubiquitinated exclusively on chromatin, thereby preventing rereplication. |
Biochemical reconstitution of ubiquitylation, substrate degron mapping, genetic epistasis, fractionation |
Genes & development |
High |
21828267
|
| 2013 |
PCNA loads onto DNA double-strand breaks after damage and promotes processive DNA end resection by Exo1 through direct interaction; PCNA tethers Exo1 to the DNA substrate to confer processivity, analogous to its processivity-factor role for DNA polymerases. |
Mammalian cell assays, Xenopus nuclear extracts, purified protein reconstitution, direct PCNA-Exo1 interaction assays |
Nucleic acids research |
High |
23939618
|
| 2014 |
CBP (and less efficiently p300) acetylates PCNA at Lys13, Lys14, Lys77, and Lys80; this acetylation promotes removal of chromatin-bound PCNA and its proteasomal degradation after nucleotide excision repair (NER). Mutation of these residues impairs DNA repair, increases UV sensitivity, and prevents proteolytic degradation of PCNA after DNA damage. |
In vitro acetylation assays with CBP/p300, mutagenesis of PCNA lysine residues, chromatin fractionation, proteasome inhibition experiments, UV sensitivity assays |
Nucleic acids research |
High |
24939902
|
| 2014 |
A hypomorphic PCNA missense mutation (p.Ser228Ile) in humans does not affect protein levels or DNA replication but profoundly alters PCNA's interaction with FEN1 and DNA Ligase 1, causing marked defects in UV survival and RNA synthesis recovery after UV irradiation, defining a novel human DNA repair disorder. |
Patient cell studies, protein interaction assays (PCNA-FEN1, PCNA-Ligase1), UV survival and RNA synthesis recovery assays, complementation analysis |
The Journal of clinical investigation |
High |
24911150
|
| 2014 |
SIVA1 constitutively interacts with PCNA via a PIP motif and serves as a molecular bridge between RAD18 and PCNA, targeting RAD18 E3 ligase activity onto PCNA for monoubiquitination; SIVA1 knockdown compromises RAD18-dependent PCNA monoubiquitination and Pol eta focus formation. |
Affinity purification of PCNA-containing complexes, co-immunoprecipitation, siRNA knockdown, focus formation assays, UV sensitivity assays |
The Journal of cell biology |
High |
24958773
|
| 2015 |
EGFR-mediated phosphorylation of PCNA at Tyr211 alters its interaction with mismatch recognition proteins MutSα and MutSβ and interferes with PCNA-dependent activation of MutLα endonuclease, thereby inhibiting mismatch repair at the initiation step and inducing nucleotide misincorporation during DNA synthesis. |
In vitro mismatch repair assays, PCNA phosphorylation assays, protein interaction assays with MutSα/MutSβ, MutLα endonuclease activation assays, nucleotide incorporation fidelity assays |
Proceedings of the National Academy of Sciences of the United States of America |
High |
25825764
|
| 2016 |
FANCM interacts with PCNA via a conserved PIP-box, and this interaction is strongly stimulated by replication stress; a FANCM PIP-box mutant is defective in promoting replication traverse of DNA interstrand crosslinks and FANCD2 monoubiquitination, indicating PCNA interaction is essential for FANCM to aid replication machines at ICLs. |
Co-immunoprecipitation, in vitro binding assays, replication traverse assays, FANCD2 ubiquitination assays, PIP-box mutagenesis |
Nucleic acids research |
High |
26825464
|
| 2016 |
HUWE1 (HECT-type ubiquitin ligase) interacts with PCNA at stalled replication forks; HUWE1 knockout cells fail to mitigate replication stress, and this function requires its interaction with PCNA. HUWE1 also mono-ubiquitinates H2AX to promote signaling at stalled forks. |
Co-immunoprecipitation, HUWE1 knockout cell analysis, replication stress assays (fiber assays), DNA damage signaling assays |
EMBO reports |
Medium |
27146073
|
| 2016 |
During translesion synthesis, PCNA and two TLS polymerases (Rev1 and Pol η) form ternary complexes with two architectures: PCNA 'tool belts' (both polymerases simultaneously bound to one PCNA ring) and 'Rev1 bridges'; these architectures are dynamic and interconvert without dissociation, facilitating polymerase selection and switching. |
Single-molecule total internal reflection fluorescence (TIRF) microscopy, assembly/disassembly kinetics of ternary complexes |
Nucleic acids research |
High |
27325737
|
| 2016 |
PCNA unloading by the Elg1-RFC-like complex (yeast homolog of ATAD5-RLC) is important for coordinating DNA replication forks with replication-coupled nucleosome assembly to maintain transcriptional silencing of HML and HMR heterochromatin through S phase. |
Yeast genetics, silencing assays, epistasis between Elg1 and histone chaperone mutants |
Proceedings of the National Academy of Sciences of the United States of America |
Medium |
29440488
|
| 2017 |
Human PCNA slides on DNA via a 'cogwheel' mechanism: basic residues in the ring channel form a right-hand spiral matching the pitch of B-DNA, and PCNA tracks the DNA backbone through short-lived polar interactions while maintaining invariant orientation relative to DNA. Mutations at the PCNA-DNA interface impair initiation of DNA synthesis by Pol δ. |
X-ray crystallography, NMR spectroscopy, molecular dynamics simulations, mutagenesis with Pol δ activity assays |
Nature communications |
High |
28071730
|
| 2018 |
EZH2 interacts with PCNA via a PIP box and dimethylates PCNA at Lys110; this dimethylation stabilizes the PCNA trimer and is required for efficient binding of DNA polymerase δ to PCNA, thereby promoting DNA replication. |
Co-immunoprecipitation, in vitro methyltransferase assays, PCNA trimer stability assays, Pol δ binding assays, site-directed mutagenesis of Lys110 |
Epigenetics & chromatin |
Medium |
30071900
|
| 2019 |
PCNA stimulates the catalytic rate of DNA polymerase δ nucleotide incorporation by >10-fold (beyond its processivity function); a growth-defective PCNA mutant (DD41,42AA) shows substantially less stimulation of Pol δ nucleotide incorporation rate, identifying the specific face of PCNA important for catalytic acceleration. |
Quench-flow kinetic measurements, electrophoretic mobility shift assays, fluorescence anisotropy binding titrations, PCNA mutant analysis |
Nucleic acids research |
High |
30605530
|
| 2019 |
ATAD5-RLC (human RFC-like complex) possesses potent PCNA-unloading activity; ATPase motif and collar domain of ATAD5 are crucial for unloading. ATAD5-RLC can unload ubiquitinated PCNA and does not require specific DNA structures. Single-molecule measurements reveal ATAD5-RLC unloads PCNA through one intermediate state before ATP hydrolysis, whereas RFC loads through two intermediate states. |
Biochemical PCNA loading/unloading assays, ATPase mutant analysis, single-molecule measurements, ubiquitinated PCNA assays |
Nature communications |
High |
31160570
|
| 2019 |
BRD4 (a BET protein) inhibits PCNA unloading by ATAD5-RLC; the BRD4 ET domain interacts with a region upstream of the ATAD5 PCNA-unloading domain, and acetyl-histone-bound BRD4 on nascent chromatin prevents premature PCNA unloading. Disruption of BRD4-ATAD5 or BRD4-acetyl-histone interactions reduces chromatin-bound PCNA, while BRD4 overexpression increases it. |
Co-immunoprecipitation of BRD4 and ATAD5, in vitro PCNA unloading assays, chromatin fractionation, BRD4 overexpression/depletion, domain mapping |
Cell reports |
Medium |
31875566
|
| 2019 |
PCNA-interacting motif affinity extends substantially beyond the canonical PIP-box boundaries; positive charges in flanking regions modulate PIP-box affinity over four orders of magnitude. Most PCNA-binding motifs reside in intrinsically disordered regions, and structure preformation is unrelated to binding affinity. |
NMR spectroscopy, affinity measurements (ITC/SPR), computational analysis of 77 confirmed PCNA-binding proteins |
Cellular and molecular life sciences : CMLS |
High |
31134302
|
| 2020 |
PCNA and its loader RFC are sufficient to activate the MutLγ endonuclease in vitro, promoting meiotic crossover-biased resolution of double Holliday junctions; MutLγ is further stimulated by EXO1 and MutSγ co-dependently. PCNA localizes to prospective crossover sites along synapsed meiotic chromosomes, and RFC facilitates MutLγ-dependent crossing over in vivo in yeast. |
In vitro endonuclease assays with purified human proteins, yeast genetics (RFC mutants), immunostaining of meiotic chromosomes |
Nature |
High |
32814343
|
| 2020 |
Rad6/Rad18 complex is recruited to RPA filaments on ssDNA exposed at translesion synthesis sites via Rad18·RPA interactions and randomly translocates along the filament; these translocations promote productive interactions with resident PCNA and significantly enhance PCNA monoubiquitination. |
Kinetic ubiquitination assays, single-molecule FRET microscopy to monitor Rad6/Rad18 dynamics on RPA filaments |
Biochemistry |
Medium |
33242956
|
| 2022 |
Human DNA Ligase 1 (Lig1) recruits PCNA to nicked DNA using two PIP motifs: one at its disordered N-terminus (PIPN-term) and one at its DNA-binding domain (PIPDBD). After assembly of Lig1-PCNA as two-stack rings encircling DNA, PIPN-term is released and only PIPDBD is required for ligation. PCNA forms a toolbelt with FEN1 on nicked DNA and recruits Lig1 to an unoccupied PCNA monomer, driving substrate handoff from FEN1 to Lig1 during Okazaki fragment maturation. |
Cryo-EM structures of PCNA-Lig1 and PCNA-FEN1-Lig1 complexes, functional ligation assays, mutagenesis of PIP motifs |
Nature communications |
High |
36539424
|
| 1995 |
Gadd45 interacts directly with PCNA; the N-terminal 94 amino acids of Gadd45 bind to PCNA, and deletion of the last 6 amino acids of PCNA abolishes this interaction. Gadd45 binds strongly to three regions of PCNA (residues 1–20, 61–80, and 196–215), with a potential stoichiometry of 2 Gadd45 molecules per PCNA monomer. |
Co-immunoprecipitation, yeast two-hybrid assay, deletion analysis of both Gadd45 and PCNA, peptide ELISA |
Oncogene |
Medium |
7784094
|
| 1999 |
Cyclin D1 forms complexes with PCNA and CDK2 in senescent cells; excess GST-cyclin D1 inhibits DNA replication and CDK2 kinase activity in vitro, and overexpression of PCNA or CDK2 rescues the proliferation inhibition caused by cyclin D1 overexpression, demonstrating that cyclin D1 inhibits cell proliferation through physical interaction with PCNA and CDK2. |
Co-immunoprecipitation of cyclin D1 with PCNA and CDK2, in vitro DNA replication assays with GST-cyclin D1, rescue by PCNA/CDK2 overexpression |
Experimental cell research |
Medium |
9925749
|
| 2002 |
Cdc25C interacts with PCNA transiently when cells begin to enter mitosis; the interaction was confirmed in vitro and in vivo by co-immunoprecipitation in Jurkat T cells, and immunofluorescence shows transient co-localization of Cdc25C and PCNA in the nucleus at the beginning of M phase. |
Yeast two-hybrid screen, co-immunoprecipitation in vitro and in vivo, immunofluorescence co-localization |
Oncogene |
Low |
11896603
|
| 2005 |
Two PCNA homotrimers can form a back-to-back doublet in mammalian cell extracts and with purified human PCNA; Arg5 and Lys110 residues on the PCNA back side are contact points. A PCNA double trimer (but not a homotrimer alone) can simultaneously accommodate chromatin assembly factor 1 and polymerase delta. |
Cell extract and purified protein analysis, mutagenesis of Arg5 and Lys110, peptide inhibition of double trimer formation, CAF-1 and Pol δ binding assays |
The Journal of biological chemistry |
Medium |
15805117
|
| 2016 |
Human SDE2 is regulated by PCNA interaction through a PIP box: SDE2 N-terminal UBL domain is cleaved at a diglycine motif via PIP-dependent deubiquitinating enzyme activity, and the cleaved SDE2 negatively regulates UV-damage-induced PCNA monoubiquitination. Cleaved SDE2 is degraded by CRL4CDT2 E3 ligase in a cell cycle- and DNA damage-dependent manner; failure to degrade SDE2 impairs S phase progression. |
Biochemical analysis of SDE2 cleavage, PCNA interaction assays (PIP-box mutagenesis), PCNA monoubiquitination assays after SDE2 manipulation, CRL4CDT2 ubiquitination assays, cell cycle analysis |
PLoS genetics |
Medium |
27906959
|
| 2016 |
TRAIP (RNF206) interacts with PCNA via a conserved PIP box at its C-terminus and localizes to stalled replication forks; inactivation of TRAIP or disruption of its PCNA interaction compromises replication fork recovery and progression, leading to chromosome instability. |
Co-immunoprecipitation, PIP-box mutagenesis, replication fork assays (fiber assays), chromosome instability analysis |
Cell discovery |
Medium |
27462463
|
| 2015 |
PCNA interacts with multiple cytosolic proteins in the MAPK and PI3K/Akt pathways as identified by mass spectrometry of PCNA pulldowns; treatment with APIM-containing peptide reduces Akt phosphorylation and TLR-mediated cytokine secretion, suggesting a platform role for PCNA in cytosolic signaling. |
Mass spectrometry of PCNA pulldowns, APIM-peptide treatment, Akt phosphorylation assays, cytokine secretion assays |
Cellular signalling |
Low |
25797046
|
| 2019 |
PCNA is expressed on the surface of cancer cells (in addition to nuclear localization) and acts as an inhibitory ligand for the NK-cell receptor NKp44-isoform1, constituting an innate immune checkpoint; a blocking monoclonal antibody against surface PCNA enhances NK cell IFNγ release, cytotoxic activity, and inhibits tumor growth in PDX mouse models. |
FACS and ImageStream staining of cell surface PCNA, chimeric NKp44 receptor binding inhibition assays, NK killing and IFNγ ELISA assays, PDX mouse experiments |
Cancer immunology research |
Medium |
31164357
|
| 2023 |
USP1 deubiquitinase acts on monoubiquitinated and polyubiquitinated PCNA (at K164 via RAD18 and UBE2K respectively); USP1 inhibition causes accumulation of ubiquitinated PCNA associated with reduced total PCNA protein levels and S-phase DNA damage. Ectopic expression of WT but not K164R PCNA reverses USP1 inhibitor sensitivity, establishing that USP1 dependency hinges on aberrant processing of ubiquitinated PCNA. |
CRISPR-Cas9 genome-wide screens, RAD18/UBE2K genetic knockouts, PCNA K164R rescue experiments, DNA synthesis assays, S-phase DNA damage analysis |
Molecular cancer therapeutics |
High |
36228090
|