| 2022 |
Human LIG1 uses two PCNA-interacting motifs (PIPs) — one at its disordered N-terminus (PIPN-term) and one at its DNA-binding domain (PIPDBD) — to recruit PCNA to nicked DNA. Cryo-EM structures show LIG1 and PCNA assemble as two-stack rings encircling DNA; once assembled, PIPN-term is released and only PIPDBD is required for ligation, facilitating substrate handoff from FEN1. PCNA forms a toolbelt with FEN1 and nicked DNA and recruits LIG1 to an unoccupied monomer to drive the transfer of DNA to LIG1 during Okazaki fragment sealing. |
Cryo-EM structures combined with functional ligation assays and PIP-motif mutagenesis |
Nature Communications |
High |
36539424
|
| 2022 |
X-ray structures of LIG1 bound to nick DNA containing G:T and A:C mismatches show that the LIG1 active site can accommodate a G:T wobble mismatch and transfer AMP to the 5'-phosphate (DNA-AMP intermediate), whereas an A:C mismatch stalls the reaction at the LIG1-AMP intermediate. APE1 interacts with LIG1 at the final BER steps and acts as a compensatory proofreading enzyme by removing mismatched bases. |
X-ray crystallography of LIG1/nick-DNA complexes, biochemical ligation assays, Co-IP/pull-down with APE1 |
Nature Communications |
High |
35790757
|
| 2021 |
LIG1 syndrome mutations R771W and R641L disrupt a cooperative network of DNA-LIG1 interactions that couple DNA substrate engagement with productive Mg2+ cofactor binding required for catalysis. High-resolution X-ray structures and pre-steady-state kinetics show these mutations destabilize Mg2+ binding affinity and increase abortive ligation. |
X-ray crystallography, steady-state and pre-steady-state kinetics, active-site mutant characterization |
Nucleic Acids Research |
High |
33444456
|
| 2019 |
The UHRF1 tandem Tudor domain (TTD) binds the methylated histone-like region of DNA Ligase 1 (LIG1 K126me2/me3) with nanomolar affinity, permitting UHRF1 recruitment to chromatin; crystal structure of the UHRF1 TTD bound to a LIG1-K126me3 peptide reveals the structural basis for high-affinity binding and shows that phosphorylation can regulate this interaction. LIG1-K126me3 binding switches UHRF1 from a closed (auto-inhibited) to an open/flexible conformation. |
X-ray crystallography of UHRF1-TTD/LIG1-K126me3 peptide complex, binding affinity measurements, structural analysis of auto-inhibition relief |
Structure |
High |
30639225
|
| 2024 |
X-ray structures of LIG1 bound to 3'-RNA-DNA hybrid nicks (3'-rA:T and 3'-rG:C) reveal that residues Asp570 and Arg871 contact the 2'-OH of the ribose at the nick, and LIG1 forms a final phosphodiester bond with 3'-ribonucleotides as efficiently as with canonical deoxyribonucleotides in vitro, indicating a lack of sugar discrimination at the 3'-terminus. |
X-ray crystallography, in vitro nick-sealing assays |
Journal of Biological Chemistry |
High |
38522520
|
| 2024 |
X-ray structures of LIG1 bound to 5'-rG:C nick DNA at the initial ligation step reveal a large conformational change downstream of the nick and a shift at Arg871 in the adenylation domain; LIG1 discriminates against 5'-ribonucleotide-containing nicks (diminished ligation) compared to 3'-ribonucleotide-containing nicks (efficient ligation), establishing a sugar-discrimination mechanism specific to the 5'-end during ribonucleotide excision repair. |
X-ray crystallography, in vitro ligation assays with wild-type and active-site mutants |
Journal of Biological Chemistry |
High |
39159820
|
| 2024 |
Single-molecule fluorescence (C-Trap and TIRF) shows LIG1 full-length binds enriched at nick sites and exhibits 1D diffusion along DNA before forming a long-lived nick complex, whereas the C-terminal catalytic fragment binds non-specifically and more transiently; the N-terminal non-catalytic domain drives 1D diffusion and nick-site enrichment. |
Single-molecule fluorescence microscopy (C-Trap, TIRF), nick-binding assays with full-length and C-terminal truncation |
Nucleic Acids Research |
High |
39404052
|
| 2024 |
Active-site residues F635 and F872 of LIG1 are required for mismatch discrimination: Ala/Leu substitutions at these positions abolish ligation of all 12 non-canonical mismatched nick substrates. Structures of F635A and F872A mutants reveal that these residues govern DNA end rigidity and the alignment of the 5'-end of the nick, creating a barrier to adenylate transfer in the presence of mismatches. |
X-ray crystallography of LIG1 active-site mutants with mismatch-containing nick DNA, biochemical ligation assays |
bioRxiv (preprint, later published)preprint |
High |
39574773
|
| 2024 |
LIG1 forms X-ray crystal structure complexes with 3'-8-oxodG and 3'-8-oxorG nicks opposite C or A, capturing pre- and post-catalytic ligation steps. The ligase active site accommodates oxidative lesions via shifts in template base position depending on 8-oxoG Hoogsteen vs. Watson-Crick conformation, leading to mutagenic or non-mutagenic ligation. LIG1 and LIG3α seal nicks after polβ insertion of 8-oxorGTP:A, and APE1 can clean oxidatively damaged ends. |
X-ray crystallography, in vitro ligation assays with wild-type and variant enzymes |
bioRxiv (preprint)preprint |
High |
38766188
|
| 2024 |
Unfilled gaps by polβ result in gap ligation by LIG1, forming single-nucleotide deletion products. LIG1 cannot discriminate against nick DNA containing a 3'-ribonucleotide regardless of base-pairing potential; APE1 has distinct exonuclease specificity for removing 3'-mismatched bases and ribonucleotides at the nick. |
In vitro gap-filling and nick-sealing assays with polβ and LIG1, ribonucleotide substitution experiments, APE1 exonuclease assays |
Nucleic Acids Research |
High |
38366780
|
| 2025 |
The HD-associated LIG1 K845N variant shows reduced ligation efficiency for nicks with mismatches, 8-oxoG, and damaged ends; crystal structures show differences in distances between the K/N845 side chain and DNA ends; single-molecule TIRF reveals K845N binds less frequently to nick sites, indicating diminished nick affinity, consistent with impaired nick recognition. |
X-ray crystallography, pre-steady-state kinetics, TIRF single-molecule microscopy |
NAR Molecular Medicine |
High |
41346861
|
| 2025 |
In vitro ligase assays demonstrate that the K845N HD-modifier variant of LIG1 enhances discrimination toward mismatched substrates and increases ligation fidelity. In cell-based assays, K845N confers protection against oxidative stress. In vivo, the mouse ortholog (K843N) suppresses somatic CAG repeat expansion in HD knock-in mice. |
In vitro ligation kinetics, cell-based oxidative stress assays, HD knock-in mouse model |
Proceedings of the National Academy of Sciences |
High |
41770933
|
| 2025 |
X-ray structures of LIG1 with 3'-8-oxodG and 3'-8-oxorG nick substrates templating A or C show structural adjustments at the +1 and +2 nucleotide positions and template base shifts depending on the dual coding potential (Hoogsteen vs. Watson-Crick) of 8-oxoG. These differences lead to mutagenic or non-mutagenic nick sealing by LIG1. |
X-ray crystallography, in vitro ligation assays |
Nucleic Acids Research |
High |
41370201
|
| 2025 |
LIG1 inactivation (via CRISPRn, CRISPRi, RNAi, and targeted protein degradation) causes viability loss selectively in BRCA1-mutant cells in vitro and in vivo. This synthetic lethality requires LIG1 catalytic activity (catalytically dead K568A does not rescue), and LIG1 perturbation increases PAR staining consistent with accumulation of ssDNA nicks. CRISPR/Cas9 screens also identified LIG1 loss as a PARP inhibitor sensitizer, causing replication stress and DNA double-strand breaks. |
CRISPR/Cas9 genetic screens, multiple LIG1 depletion strategies with catalytic mutant rescue, PAR staining, xenograft in vivo model |
Molecular Cancer Therapeutics / Journal of Clinical Investigation |
High |
39718835 39868490
|
| 2018 |
SRSF1 binds to LIG1 mRNA and stabilizes it while also enhancing its translation in an mTOR-dependent manner, thereby increasing LIG1 protein levels in NSCLC cells. siRNA-mediated LIG1 knockdown reduces NSCLC cell proliferation and increases apoptosis. |
RNA-binding protein immunoprecipitation, mRNA stability assays, mTOR inhibition, siRNA knockdown with phenotypic readout |
Laboratory Investigation |
Medium |
30181552
|
| 2025 |
During Okazaki fragment maturation, Polδ, FEN1, and LIG1 sequentially but not simultaneously bind PCNA. FEN1 R192 methylation mediates its PCNA association and prevents premature LIG1 loading; JMJD1B-mediated demethylation of FEN1 R192 promotes FEN1 dissociation from PCNA and enables LIG1 recruitment for nick ligation. |
Cell-based co-immunoprecipitation, methylation mutant analysis, JMJD1B knockout cells, replication intermediate analysis |
bioRxiv (preprint)preprint |
Medium |
bio_10.1101_2025.10.06.680735
|
| 2025 |
Single-molecule TIRF shows LIG3α binds less frequently but forms longer-lived complexes than LIG1 on nick DNA; both ligases can bind gap DNA as efficiently as nick DNA, but LIG1 forms more stable long-lived complexes on gap DNA compared to LIG3α, revealing distinct nick vs. gap substrate recognition dynamics between the two ligases. |
Single-molecule TIRF microscopy, in vitro ligation assays comparing LIG1 and LIG3α |
bioRxiv (preprint)preprint |
Medium |
40666977
|