Affinage

SESTD1

SEC14 domain and spectrin repeat-containing protein 1 · UniProt Q86VW0

Length
696 aa
Mass
79.3 kDa
Annotated
2026-06-10
20 papers in source corpus 6 papers cited in narrative 6 extracted findings
Cross-family judge vs UniProt: Affinage preferred faithfulness: 5/5 claims corpus-supported (100%)

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

SESTD1 is a Ca2+-dependent phospholipid-binding scaffold protein that couples membrane lipid signaling to cytoskeletal regulation and Rho-family GTPase control across ion channel, developmental, and synaptic contexts (PMID:20164195, PMID:23696638, PMID:29293918). Through its SEC14-like lipid-binding domain and spectrin-type cytoskeleton interaction domains, it binds multiple phospholipid species in a Ca2+-dependent manner and associates with the CIRB domain of TRPC4 and TRPC5 channels, where it is required for efficient receptor-mediated TRPC5 activation (PMID:20164195). In the Wnt/Planar Cell Polarity pathway, SESTD1 binds Vangl2 and Dact1 and, through the Dact1 interaction, activates Rho GTPases; mouse knockout phenocopies Dact1 loss with neural tube and tail defects and shows genetic interactions with Vangl2 and Dvl2, the latter potentiating Rho activation by the Dact1–Sestd1 complex (PMID:23696638, PMID:24505507). In neurons, SESTD1 acts as a brake on excitatory connectivity: its SPEC1 domain binds Rac1 and interferes with the Rac1–Trio8 GEF interaction to limit dendritic spine density and mEPSC frequency (PMID:26272757), and loss of Sestd1 in mice reduces dendrite arbors, spines, and excitatory synapses with elevated Rac1 and RhoA activation, in part via complex formation with the Rho-GAP BCR (PMID:29293918). SESTD1 is also required for efficient West Nile virus (Kunjin) replication in human cells and is targeted by the antiviral miRNA miR-532-5p (PMID:26676784).

Mechanistic history

Synthesis pass · year-by-year structured walk · 6 steps
  1. 2010 High

    Established SESTD1 as a TRPC4/TRPC5 channel-associated, Ca2+-dependent lipid-binding protein, defining its core biochemical identity and a functional role in channel activation.

    Evidence Yeast two-hybrid screen, reciprocal Co-IP, in vitro phospholipid-binding assays, domain mapping, and electrophysiology in heterologous cells

    PMID:20164195

    Open questions at the time
    • Lipid-binding specificity in vivo not resolved
    • No structural model of the SEC14-like or spectrin domains
    • Whether lipid binding gates TRPC5 regulation directly was not dissected
  2. 2013 High

    Placed Sestd1 in the Wnt/PCP pathway as a Vangl2- and Dact1-binding partner that activates Rho GTPases, connecting it to morphogenetic signaling.

    Evidence Reciprocal Co-IP, domain mapping, mouse knockout phenotyping, genetic epistasis with a Vangl2 semidominant allele, and cell-based Rho GTPase assays

    PMID:23696638

    Open questions at the time
    • Molecular mechanism by which the Dact1–Sestd1 interface activates Rho not defined
    • Direct GEF/GAP not identified in this context
    • Whether lipid binding contributes to PCP function untested
  3. 2013 Medium

    Distinguished a Dvl2 branch from the Dact1 axis, showing Dvl2 potentiates Rho activation by the Dact1–Sestd1 complex without affecting β-catenin signaling, and revealing genetic synergy.

    Evidence Co-IP, cell-based β-catenin and Rho GTPase reporter assays, and mouse double-knockout genetic interaction analysis

    PMID:24505507

    Open questions at the time
    • Single-lab study
    • Biochemical basis of Dvl2-enhanced Rho activation unresolved
    • Compartment where the complexes form not defined
  4. 2015 High

    Defined a synaptic mechanism in which SESTD1 limits spine density by disrupting the Rac1–Trio8 GEF interaction, identifying the SPEC1 domain as the Rac1-binding module.

    Evidence Overexpression and siRNA knockdown in hippocampal neurons, Co-IP, SPEC1 domain mapping, mEPSC recording, and Trio8-GEF rescue

    PMID:26272757

    Open questions at the time
    • How SESTD1 physically blocks Rac1–Trio8 not structurally defined
    • Link to lipid-binding or channel functions untested
    • In vivo confirmation pending in this study
  5. 2015 Medium

    Identified SESTD1 as a host factor required for efficient West Nile virus replication and a target of antiviral miR-532-5p, extending its roles to virus–host interaction.

    Evidence siRNA knockdown with viral replication assay, miRNA target validation, and mouse brain expression analysis

    PMID:26676784

    Open questions at the time
    • Mechanism by which SESTD1 supports replication unknown
    • Single-lab study
    • Whether lipid binding or Rho regulation underlies the viral phenotype untested
  6. 2019 High

    Established Sestd1 as a developmentally regulated synaptic protein whose loss reduces dendrite and synapse formation via dysregulated Rho-family GTPase signaling, linking it to the Rho-GAP BCR.

    Evidence Mouse knockout, subcellular fractionation and immunofluorescence, AMPA/NMDA EPSC recording, Co-IP/mass spectrometry from brain, and Rho GTPase activation assays

    PMID:29293918

    Open questions at the time
    • Direct functional role of the SESTD1–BCR complex not dissected
    • How SESTD1 coordinates Rac1 vs RhoA regulation unclear
    • Mechanism of pre- to postsynaptic shift unknown

Open questions

Synthesis pass · forward-looking unresolved questions
  • How SESTD1's Ca2+-dependent lipid binding mechanistically integrates with its regulation of Rho-family GTPases across channel, developmental, and synaptic settings remains unresolved.
  • No structural model connecting lipid-binding and spectrin domains to GTPase regulation
  • Whether a single biochemical activity unifies the TRPC, PCP, and synaptic roles is unknown
  • No defined direct catalytic activity on GTPases

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0060090 molecular adaptor activity 2 GO:0098772 molecular function regulator activity 2 GO:0008092 cytoskeletal protein binding 1 GO:0008289 lipid binding 1
Localization
GO:0005886 plasma membrane 1
Pathway
R-HSA-112316 Neuronal System 2 R-HSA-1266738 Developmental Biology 2 R-HSA-162582 Signal Transduction 2

Evidence

Reading pass · 6 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2010 SESTD1 was identified as a novel binding partner of TRPC4 and TRPC5 channels, associating via the channel's calmodulin- and inositol 1,4,5-trisphosphate receptor-binding (CIRB) domain. SESTD1 contains a lipid-binding SEC14-like domain and spectrin-type cytoskeleton interaction domains, binds multiple phospholipid species in vitro in a Ca2+-dependent manner, and is essential for efficient receptor-mediated activation of TRPC5. Yeast two-hybrid screen of human aortic cDNA library, co-immunoprecipitation, in vitro phospholipid-binding assays, functional (electrophysiological) studies, domain-mapping experiments The Journal of biological chemistry High 20164195
2013 Sestd1 is a novel binding partner of both Vangl2 and Dact1 in the Wnt/Planar Cell Polarity (PCP) pathway. The Sestd1–Dact1 interface maps to the C-terminal region of Sestd1 and the N-terminal region of Dact1. Genetic knockout of Sestd1 in mice phenocopies Dact1 knockout (neural tube defects, shortened/curly tail, developmental malformations), and Sestd1 KO shows reciprocal genetic rescue with a semidominant Vangl2 mutation, placing Sestd1 in the PCP pathway upstream of or parallel to Vangl2. In cell-based assays, the Sestd1–Dact1 interaction induces Rho GTPase activation. Co-immunoprecipitation, domain-mapping, mouse knockout generation, genetic epistasis (Vangl2 semidominant allele rescue), Wnt pathway activity assays, cell-based Rho GTPase activation assay The Journal of biological chemistry High 23696638
2013 Dvl2 forms complexes with Sestd1 independently of both Dact1 and Vangl2. In cell-based assays, Sestd1 does not alter Dvl2 activation of Wnt/β-catenin signaling, but Dvl2 enhances activation of Rho family GTPases by the Dact1–Sestd1 complex. Genetic experiments show that Dvl2 KO, recessive in wild-type background, causes dominant embryonic lethality in Sestd1 or Dact1 KO backgrounds, indicating genetic synergy distinct from the epistasis between Sestd1 and Dact1. Co-immunoprecipitation, cell-based β-catenin and Rho GTPase reporter assays, mouse double-KO genetic interaction analysis Communicative & integrative biology Medium 24505507
2015 SESTD1 negatively regulates dendritic spine density in hippocampal neurons by interfering with the interaction between Rac1 and its guanine nucleotide exchange factor Trio8. The SPEC1 domain of SESTD1 mediates interaction with Rac1. Overexpression of SESTD1 decreases spine density and miniature excitatory postsynaptic current (mEPSC) frequency; knockdown of SESTD1 increases spine density and mEPSC frequency. Transfection of the GEF domain of Trio8 rescues the SESTD1-mediated decrease in spine density. Overexpression and siRNA knockdown in cultured hippocampal neurons, co-immunoprecipitation (Rac1–SESTD1 interaction), domain deletion/mutation mapping (SPEC1), electrophysiology (mEPSC recording), rescue experiments with Trio8-GEF domain Scientific reports High 26272757
2015 SESTD1 is required for efficient West Nile virus (Kunjin strain) replication in human cells. siRNA depletion of SESTD1 reduced WNVKUN replication. miR-532-5p targets and downregulates SESTD1 expression, and this suppression mediates an antiviral host response. siRNA knockdown of SESTD1 in human cells with viral replication assay, miRNA target validation (luciferase/reporter assays implied, qRT-PCR), in vivo mouse brain expression analysis Journal of virology Medium 26676784
2019 Sestd1 is a synapse protein that shifts from the presynaptic to postsynaptic compartment as neurons mature postnatally in the mouse hippocampus. Conditional/global deletion of Sestd1 reduces dendrite arbors, spines, and excitatory synapses in hippocampal pyramidal neurons, with cell-autonomous reductions in both AMPA- and NMDA-mediated EPSCs. These deficits are associated with increased activation of Rac1 and RhoA. Co-immunoprecipitation and mass spectrometry identified BCR (Breakpoint Cluster Region), a Rho GTPase-activating protein (GAP), as a Sestd1 complex partner in brain tissue. Mouse genetic knockout, in vivo fractionation and immunofluorescence for synaptic localization, electrophysiology (AMPA- and NMDA-EPSC recording), co-immunoprecipitation from brain tissue coupled with mass spectrometry, Rho GTPase activation assays Cerebral cortex High 29293918

Source papers

Stage 0 corpus · 20 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2015 Genome-wide association study identifies SESTD1 as a novel risk gene for lithium-responsive bipolar disorder. Molecular psychiatry 64 26503763
2015 Human MicroRNA miR-532-5p Exhibits Antiviral Activity against West Nile Virus via Suppression of Host Genes SESTD1 and TAB3 Required for Virus Replication. Journal of virology 60 26676784
2011 Integration of transient receptor potential canonical channels with lipids. Acta physiologica (Oxford, England) 53 21624095
2014 TRPC5. Handbook of experimental pharmacology 51 24756705
2010 The phospholipid-binding protein SESTD1 is a novel regulator of the transient receptor potential channels TRPC4 and TRPC5. The Journal of biological chemistry 43 20164195
2009 Genomic and geographic distribution of private SNPs and pathways in human populations. Personalized medicine 22 20352079
2017 Genome-wide association study identifies SESTD1 as a novel risk gene for lithium-responsive bipolar disorder. Molecular psychiatry 19 28194006
2015 The phospholipid-binding protein SESTD1 negatively regulates dendritic spine density by interfering with Rac1-Trio8 signaling pathway. Scientific reports 17 26272757
2013 SEC14 and spectrin domains 1 (Sestd1) and Dapper antagonist of catenin 1 (Dact1) scaffold proteins cooperatively regulate the Van Gogh-like 2 (Vangl2) four-pass transmembrane protein and planar cell polarity (PCP) pathway during embryonic development in mice. The Journal of biological chemistry 17 23696638
2022 Genome-wide association study identifies quantitative trait loci affecting cattle temperament. Zoological research 13 34766477
2021 Pharmacogenomics of Lithium Response in Bipolar Disorder. Pharmaceuticals (Basel, Switzerland) 13 33804842
2013 SEC14 and Spectrin Domains 1 (Sestd1), Dishevelled 2 (Dvl2) and Dapper Antagonist of Catenin-1 (Dact1) co-regulate the Wnt/Planar Cell Polarity (PCP) pathway during mammalian development. Communicative & integrative biology 10 24505507
2020 Familial Infertility (Azoospermia and Cryptozoospermia) in Two Brothers-Carriers of t(1;7) Complex Chromosomal Rearrangement (CCR):  Molecular Cytogenetic Analysis. International journal of molecular sciences 9 32604929
2019 Sestd1 Encodes a Developmentally Dynamic Synapse Protein That Complexes With BCR Rac1-GAP to Regulate Forebrain Dendrite, Spine and Synapse Formation. Cerebral cortex (New York, N.Y. : 1991) 9 29293918
2021 Multiplatform discovery and regulatory function analysis of structural variations in non-small cell lung carcinoma. Cell reports 8 34496260
2023 Genome-wide association study identifies variants associated with semen volume in white-feathered broilers. Animal genetics 6 37705287
2024 Cerebral ischemic injury impairs autophagy and exacerbates cognitive impairment in APP/PS1 mice. International immunopharmacology 4 39522311
2025 The Ancestor and Evolution of the Giant Muscle Protein Connectin/Titin. Journal of molecular evolution 2 40287879
2024 Construction of a panoramic mRNA map of adult noncystic fibrosis bronchiectasis and a preliminary study of the underlying molecular mechanisms. European journal of medical research 1 39127654
2025 Complex Sex Determination in the Grey Mullet Mugil cephalus Suggested by Individual Whole Genome Sequence Data. Animals : an open access journal from MDPI 0 40867772

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