| 2014 |
RBM47 binds broadly to mRNAs, most prominently in introns and 3'UTRs (HITS-CLIP), and alters splicing and abundance of a subset of target mRNAs, including stabilizing DKK1 mRNA to inhibit tumor progression. |
Transcriptome-wide HITS-CLIP, mRNA stability assays, loss-of-function in cell line models |
eLife |
High |
24898756
|
| 2014 |
RBM47 physically interacts with APOBEC1 and A1CF, can substitute for A1CF, and is necessary and sufficient for APOBEC1-mediated C-to-U RNA editing in vitro; editing is impaired in Rbm47-deficient mice. |
Co-immunoprecipitation, in vitro RNA editing reconstitution, Rbm47 knockout mouse model |
EMBO reports |
High |
24916387
|
| 2018 |
A1CF and RBM47 function independently yet interact in a tissue-specific manner to regulate APOBEC1-dependent C-to-U RNA editing; intestine-specific Rbm47 knockout virtually eliminates apoB RNA editing, while liver-specific knockout reduces editing in a subset of targets; double knockout of A1cf and Rbm47 eliminates apoB editing and abrogates most other targets. |
Tissue-specific conditional knockout mice, RNA editing quantification in liver and intestine |
RNA |
High |
30309881
|
| 2019 |
RBM47 promotes inclusion of exon 20 of TJP1 pre-mRNA by recognizing a (U)GCAUG motif in the downstream intronic region; the first RRM domain of RBM47 is critical for this alternative splicing regulation; TJP1 isoform lacking exon 20 enhances actin stress fiber assembly and promotes cell migration during EMT. |
Minigene splicing assays, RRM domain mutagenesis, wound healing assay, isoform-specific functional rescue |
Oncogene |
High |
31358901
|
| 2019 |
RBM47 regulates p53 at the transcriptional level by controlling p53 promoter activity; RBM47 knockdown reduces p53 mRNA and protein levels, consequently reducing p21 expression and shifting irradiated cells from senescence to cell death. |
siRNA knockdown, p53 promoter-luciferase reporter assay, Flag-RBM47 overexpression |
Cell death and differentiation |
Medium |
31511650
|
| 2019 |
APOBEC1 cofactors A1CF and RBM47 show differential RNA editing activity on APOB and other target RNAs; the minimal domain requirement of RBM47 for editing activity was determined; human vs. mouse RBM47 show clear differences in editing selectivity. |
HEK293T cell reconstitution with APOBEC1 + cofactor, fluorescence-based eGFP localization editing assay, domain deletion analysis |
Journal of molecular biology |
High |
30844405
|
| 2018 |
RBM47 promotes IL-10 mRNA stability in B cells by binding to AU-rich elements in the 3'UTR of Il10 mRNA, thereby elevating IL-10 production and enhancing regulatory B cell immunosuppressive function. |
mRNA microarray, RNA immunoprecipitation (RIP), mRNA stability assay, overexpression in primary B cells |
Cellular & molecular immunology |
Medium |
29844590
|
| 2020 |
RBM47 binds AXIN1 mRNA and stabilizes it, thereby enhancing suppression of Wnt/β-catenin signaling and inhibiting NSCLC cell proliferation, migration, and invasion. |
RNA immunoprecipitation, mRNA stability assay, lentiviral knockdown, in vitro and in vivo functional assays |
Surgical oncology |
Medium |
32891348
|
| 2021 |
RBM47 binds to the 3'UTR of IFNAR1 mRNA, increases its stability, and retards IFNAR1 protein degradation, thereby amplifying type I interferon downstream signaling and conferring broad-spectrum antiviral activity. |
RNA immunoprecipitation, mRNA stability assay, multiple virus infection models in vitro and in vivo, ISRE reporter assay |
EMBO reports |
High |
34160127
|
| 2021 |
RBM47 binds to the promoter of BCAT1 and regulates its transcription; RBM47 also binds hnRNPM and cooperatively regulates alternative splicing of multiple pre-mRNAs in nasopharyngeal carcinoma cells. |
ChIP, transcriptome analysis, Co-immunoprecipitation with hnRNPM, functional rescue experiments |
Journal of genetics and genomics |
Medium |
34274258
|
| 2022 |
RBM47 directly binds and stabilizes lncRNA SNHG5; SNHG5 in turn inhibits ubiquitination and degradation of FOXO3 by recruiting USP21, promoting FOXO3 nuclear translocation that activates ATG3/ATG5 to induce autophagy; FOXO3 feeds back to activate RBM47 transcription, forming a loop. |
RIP, co-immunoprecipitation, ubiquitination assay, nuclear fractionation, in vitro and in vivo functional assays |
Cell death & disease |
Medium |
35338124
|
| 2022 |
RBM47 stabilizes UPF1 mRNA by binding to its 3'UTR and also promotes UPF1 transcription as a transcription factor, thereby upregulating NMD activity and suppressing HCC progression. |
RNA immunoprecipitation, mRNA stability assay, promoter activity assay, xenograft tumor model |
Cell death discovery |
Medium |
35831298
|
| 2022 |
RBM47 binds PTEN mRNA and stabilizes it; miR-181c/d-5p directly targets RBM47 mRNA to suppress its expression, thereby reducing PTEN stability and activating PI3K/AKT signaling in colorectal cancer. |
RNA pulldown, luciferase reporter assay, RIP, mRNA stability assay with actinomycin D, rescue experiments |
Molecular carcinogenesis |
Medium |
36321407
|
| 2013 |
RBM47 specifically binds RNA but not single-stranded DNA; knockdown of rbm47 in zebrafish causes headless/small-head phenotypes rescued by wnt8a morpholino, placing rbm47 upstream of Wnt8a signaling in head development. |
RNA binding assay, morpholino knockdown in zebrafish, genetic rescue with wnt8a morpholino, microarray gene expression analysis |
Developmental dynamics |
Medium |
24038582
|
| 2016 |
Rbm47 function is required in the embryo proper (not the visceral endoderm) for viability and growth; conditional inactivation using Cre/FLP-mediated approaches demonstrates tissue-specific requirement. |
Conditional knockout/restoration using FlEx gene-trap cassette with Cre and FLP recombinases in mice |
Genesis |
Medium |
26789794
|
| 2020 |
Zebrafish RBM47 interacts with MAVS and promotes its lysosome-dependent degradation, changing MAVS cellular localization from cytoplasm to lysosome region, thereby suppressing downstream MITA and IRF3/7 activation and inhibiting IFN production. |
Co-immunoprecipitation, subcellular fractionation/localization, lysosome inhibitor assays, reporter assays for IFN pathway components |
Journal of immunology |
Medium |
32859727
|
| 2013 |
RBM47 binds Nanog mRNA in mouse embryonic stem cells (but not Sox2 or Oct4 mRNA), as demonstrated by RNA-binding protein immunoprecipitation after overexpression of HA-tagged Rbm47. |
RIP followed by RT-PCR in mouse ESCs overexpressing HA-Rbm47 |
Molecular biology reports |
Low |
23649762
|
| 2023 |
RBM47 undergoes ISGylation at lysine 329, dependent on prior S309 phosphorylation (induced by epinephrine); K329R knockin mice with defective RBM47-ISGylation show impaired immune activation and increased susceptibility to lung injury; RBM47-ISGylation regulates TSC22D3 mRNA expression. |
K329R knockin mouse model, site-specific nanobody-targeted E3 ligase ISGylation in human cells, cytokine/immune phenotyping |
Cell death discovery |
Medium |
38036512
|
| 2024 |
Deubiquitinase OTUD4 directly interacts with RBM47 and promotes RBM47 protein stability via deubiquitination; stabilized RBM47 in turn regulates ATF3 mRNA stability, promoting ATF3-mediated ferroptosis in ccRCC. |
Co-immunoprecipitation, ubiquitination assay, mRNA stability assay, rescue experiments in vitro and in vivo |
Apoptosis |
Medium |
38553613
|
| 2023 |
RBM47 binds to flanking introns of circFNDC3B to facilitate its biogenesis (back-splicing), resulting in reduced FNDC3B linear mRNA; the resulting circFNDC3B competitively inhibits IGF2BP1 binding to FNDC3B mRNA, further destabilizing it. |
RIP assay, RNA stability analysis, RNA-FISH, immunofluorescence, functional assays |
Cancer cell international |
Medium |
38129874
|
| 2023 |
RBM47 stabilizes FBXO2 mRNA, promoting STAT3 phosphorylation in chondrocytes and advancing osteoarthritis; RBM47 knockdown alleviates IL-1β-induced inflammation, apoptosis, and ECM degradation. |
RIP, mRNA stability assay, STAT3 phosphorylation western blot, rescue experiments with FBXO2/STAT3 overexpression |
Biochemical genetics |
Medium |
38070024
|
| 2025 |
RBM47 directly binds to the 3'UTR of ITGAV mRNA via AU-rich elements and promotes its degradation; miR-122 suppresses RBM47 expression, thereby elevating ITGAV levels, which activates latent TGF-β and promotes HCC metastasis. |
RIP, mRNA stability assay with AU-rich element mapping, luciferase reporter, functional rescue in vitro and in vivo |
PloS one |
Medium |
40638600
|
| 2025 |
RBM47 destabilizes PD-L1 mRNA via 3'UTR binding, reducing PD-L1 expression and thereby enhancing T-cell proliferation and cytotoxicity against NSCLC cancer stem cells; m6A modification by METTL3/YTHDF1 decreases RBM47 expression. |
m6A methylated RIP-PCR, RIP, functional T-cell co-culture assay, in vitro and in vivo CSC assays |
Journal of thoracic disease |
Low |
41376900
|
| 2025 |
RBM47 (via its RRM2 domain) binds to the 3'UTR of cGAS mRNA and enhances its stability, thereby activating the cGAS-STING pathway; RUNX1 directly binds the Rbm47 promoter and drives its transcription, placing RUNX1 upstream of RBM47 in this pathway. |
RIP (RRM2 domain interaction), ChIP (RUNX1 on Rbm47 promoter), mRNA stability assay, cGAS inhibitor rescue, mouse POCD model |
Communications biology |
Medium |
41407921
|
| 2025 |
RBM47 regulates tissue-specific alternative splicing of SEC31A (a COPII component), and inclusion of an uncharacterized exon in SEC31A increases lipid transport; RBM47 was identified as the trans-acting splicing regulator by correlation of splicing with RBP expression across tissues and then validated experimentally. |
RNA-seq across human tissues, correlation analysis, experimental validation of RBM47-mediated SEC31A splicing, lipid transport functional assay |
RNA |
Medium |
40436629
|
| 2026 |
RBM47 directly binds to the 3'UTR of GSDMA mRNA and stabilizes it; GSDMA is necessary for RBM47-induced mesenchymal-to-epithelial transition (MET), suppression of migration/invasion, pyroptosis induction, and chemosensitization to Oxaliplatin in CRC cells. |
RNA-Seq, RIP, mRNA stability assay, GSDMA knockdown rescue experiments, functional migration/invasion/pyroptosis assays |
Cancers |
Medium |
41681975
|
| 2026 |
RBM47 binds to AU-rich elements in ENC1 mRNA and enhances ENC1 stability, thereby curbing NRF2 synthesis and nuclear translocation in macrophages during atherosclerosis, promoting oxidative stress. |
RIP, mRNA stability assay, AAV-mediated in vivo knockdown, NRF2 inhibitor rescue in vitro |
Biochemical pharmacology |
Medium |
41962778
|
| 2024 |
RBM47 stabilizes PDIA6 mRNA by binding to its 3'UTR, maintaining PDIA6 expression to promote pancreatic cancer cell proliferation and immune evasion from NK cells. |
RIP, luciferase reporter assay, mRNA stability assay, rescue experiments, metabolomics |
Journal of translational medicine |
Low |
39741300
|
| 2025 |
HDAC2 promotes RBM47 expression through H3K27 deacetylation; RBM47 in turn increases NONO expression in medulloblastoma cells, defining a HDAC2/RBM47/NONO oncogenic axis. |
ChIP-qPCR, luciferase reporter assay, qRT-PCR, western blot, lentiviral RNAi |
Translational oncology |
Low |
41027284
|
| 2023 |
Intestine-specific Rbm47 knockout mice exhibit increased intestinal proliferation, abnormal villus morphology, upregulation of antioxidant and Wnt signaling pathways, and protection against colitis-associated cancer but increased spontaneous polyposis with age; RBM47 regulates alternative splicing of TJP1 mRNA in human colorectal cancer. |
Intestine-specific conditional knockout mouse (Rbm47-IKO), intestinal organoids, ApcMin/+ crosses, radiation/chemical injury models |
JCI insight |
High |
37014710
|
| 2021 |
RBM47 inhibits K562 cell proliferation and cell cycle progression by binding HMGA2 mRNA and promoting its degradation, reducing HMGA2 protein expression. |
RIP, mRNA stability assay, CCK-8, flow cytometry, lentiviral overexpression/knockdown |
Zhongguo shi yan xue ye xue za zhi |
Low |
34105460
|
| 2024 |
In glioblastoma, RBM47 stabilizes mRNAs of inflammatory genes and activates the NF-κB pathway; NF-κB acts as a transcription factor that in turn enhances RBM47 transcription, forming a positive feedback loop that promotes M2 macrophage polarization in the tumor microenvironment. |
RNA-immunoprecipitation (RIP), ChIP, RNA sequencing, immunofluorescence, western blot |
Phytomedicine |
Medium |
38518642
|
| 2023 |
RBM47 interferes with the interaction between lncRNA HOXB-AS1 and p53 protein by directly binding HOXB-AS1, freeing p53 to enter the nucleus and activating p53 signaling in renal cell carcinoma; RBM47 expression is regulated by CBP/P300-mediated H3K27ac. |
RIP, Co-immunoprecipitation, nuclear fractionation, chromatin modification assay, functional assays |
Cell death discovery |
Medium |
37660095
|