Affinage

PXN

Paxillin · UniProt P49023

Length
591 aa
Mass
64.5 kDa
Annotated
2026-06-10
34 papers in source corpus 15 papers cited in narrative 15 extracted findings
Cross-family judge vs UniProt: Affinage preferred faithfulness: 5/5 claims corpus-supported (100%)

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

Paxillin (PXN) is a focal adhesion scaffold protein that couples integrin-based adhesion and mechanical inputs to actin remodeling, cell migration, and tumor progression (PMID:37846507, PMID:34466738). Its disordered N-terminal domain undergoes conformational compaction upon binding the C-terminal FAT domain of FAK, forming a multi-state fuzzy complex that is necessary and sufficient to localize FAK to focal adhesions [PMID:bio_10.1101_2025.01.01.630265]. PXN function is gated by competing phosphorylation: FAK/Src phosphorylate tyrosine residues to promote focal adhesion assembly, while ULK1/2 directly phosphorylate S32 and S119 to weaken PXN homotypic interactions and liquid-liquid phase separation, thereby opposing focal adhesion assembly, stress fiber formation, and migration (PMID:37846507). At adhesions, substrate stiffness drives FAK/PXN phosphorylation that activates Rac1 and downstream YAP nuclear translocation to specify endothelial tip cells, and PXN sits functionally upstream of focal-adhesion and adherens-junction tension buildup (PMID:34466738). In cancer, multiple upstream inputs converge on PXN phosphorylation and expression to drive migration and invasion: ANGPTL4 binding NRP1 triggers ABL1-dependent PXN phosphorylation (PMID:37169211), CXCL5 activates a PXN/AKT cascade that upregulates PD-L1 for immune evasion (PMID:39034411), and integrin β1 feeds a PXN/YWHAZ/AKT axis (PMID:34977001, PMID:34589278). PXN expression is transcriptionally controlled by STAT3, ETV4, and LSD1 and is suppressed by miR-212, while PXN reciprocally activates STAT3 via SRC and stabilizes YB-1 against ubiquitin-mediated degradation, establishing feed-forward loops in tumor cells (PMID:25285406, PMID:41872167, PMID:26693054, PMID:28468300, PMID:31670855).

Mechanistic history

Synthesis pass · year-by-year structured walk · 14 steps
  1. 2012 Low

    Established a tissue-specific expression context for PXN as a focal adhesion scaffold, showing it is selectively present in pillar cells of the developing organ of Corti.

    Evidence Reporter expression analysis and in situ hybridization in mouse inner ear

    PMID:22446079

    Open questions at the time
    • No functional consequence of pillar-cell expression established
    • No mechanism linking PXN to inner ear development
    • Localization-only, single study
  2. 2014 Medium

    Connected chromatin-level regulation to PXN, showing the demethylase LSD1 controls PXN transcription and a LSD1→PXN phosphorylation→migration axis.

    Evidence ChIP-seq, transcriptome, siRNA knockdown and migration assays in prostate cancer cells

    PMID:25285406

    Open questions at the time
    • Whether LSD1 acts directly at the PXN locus versus indirectly not fully resolved
    • Kinase responsible for the downstream PXN phosphorylation not identified
  3. 2015 Medium

    Identified a post-transcriptional brake on PXN, demonstrating miR-212 directly targets the PXN 3'UTR to suppress invasion.

    Evidence Luciferase 3'UTR reporter, miRNA mimic/inhibitor, rescue, in vitro/in vivo invasion in gastric cancer

    PMID:26693054

    Open questions at the time
    • Other miR-212 targets contributing to phenotype not excluded
    • Does not address PXN protein-level activity changes
  4. 2017 Medium

    Mapped a direct transcriptional input by showing STAT3 binds the PXN promoter to drive PXN-mediated tumor angiogenesis.

    Evidence EMSA and ChIP at the PXN promoter, HUVEC angiogenesis assay in ER+ breast cancer cells

    PMID:28468300

    Open questions at the time
    • Direction of causality within Src/FAK/STAT3 loop not fully dissected
    • Pharmacological agent (nobiletin) may have off-target effects
  5. 2018 Medium

    Placed PXN within a YAP1-FAK/PXN signaling module governing the switch from collective to mesenchymal invasion.

    Evidence IHC correlation, invasion assays, Src-family inhibition in nasopharyngeal carcinoma

    PMID:30504771

    Open questions at the time
    • PXN's specific contribution versus FAK/YAP1 not separated
    • Direct molecular link between cytoplasmic LIF and PXN unresolved
  6. 2019 Medium

    Added a second direct transcriptional activator, showing ETV4 upregulates PXN to drive proliferation and migration.

    Evidence Luciferase reporter, microarray, gain/loss-of-function in NSCLC cells

    PMID:31670855

    Open questions at the time
    • ETV4 binding site within PXN regulatory region not mapped precisely
    • PXN inhibition only partially abolishes ETV4 effects
  7. 2021 Medium

    Defined the mechanotransduction output of PXN phosphorylation, linking substrate stiffness through FAK/PXN to Rac1 activation and YAP-driven endothelial tip cell specification.

    Evidence Tunable hydrogels, phospho-WB, Rac1 GTP-pulldown, YAP imaging, loss-of-function in endothelial cells

    PMID:34466738

    Open questions at the time
    • Specific phospho-residues mediating Rac1 activation not defined
    • How p-PXN loosens intercellular junctions mechanistically unclear
  8. 2021 Medium

    Embedded PXN in integrin and small-GTPase signaling cascades, placing it downstream of ITGB1 and CDC42/ITGB1 in AKT-coupled migration and cell-cycle pathways.

    Evidence siRNA knockdown, phospho-WB, CDC42 rescue, migration/invasion, xenograft in HCC and gastric cancer

    PMID:34589278 PMID:34977001

    Open questions at the time
    • Direct versus indirect regulation of PXN by ITGB1 not distinguished in HCC study (Low confidence)
    • Mechanism of YWHAZ involvement in the axis not detailed
  9. 2023 High

    Revealed an antagonistic regulatory logic on PXN, showing ULK1/2 directly phosphorylate S32/S119 to weaken PXN phase separation and oppose FAK/Src-driven focal adhesion assembly.

    Evidence In vitro kinase assay, S32/S119 mutagenesis, phase separation assay, FA imaging, KO/KD migration phenotypes

    PMID:37846507

    Open questions at the time
    • How the ULK1/2 versus FAK/Src balance is set in cells not defined
    • Physiological signals controlling ULK1/2 phosphorylation of PXN unknown
  10. 2023 Medium

    Identified an upstream receptor-kinase route to PXN phosphorylation, showing ANGPTL4/NRP1/ABL1 drives PXN phosphorylation and migration.

    Evidence Co-receptor binding, siRNA of NRP1/ABL1, dasatinib, phospho-PXN WB, migration in HNSCC

    PMID:37169211

    Open questions at the time
    • ABL1 phospho-target residues on PXN not mapped
    • dasatinib inhibits multiple kinases beyond ABL1
  11. 2024 Medium

    Linked PXN to immune evasion, showing CXCL5 drives a PXN/AKT cascade that upregulates PD-L1 in a positive feedback loop.

    Evidence Gene silencing, p-PXN/p-AKT WB, PD-L1 flow cytometry, xenograft in lung cancer

    PMID:39034411

    Open questions at the time
    • Direct biochemical link between p-PXN and AKT activation not shown
    • Mechanism by which PXN/AKT controls PD-L1 transcription unresolved
  12. 2025 Medium

    Resolved the structural basis of FAK recruitment, showing the disordered PXN N-terminus forms a multi-state fuzzy complex with the FAK FAT domain that is necessary and sufficient to localize FAK to adhesions.

    Evidence NMR and SAXS ensemble analysis of the PXN–FAT disordered complex (preprint)

    PMID:bio_10.1101_2025.01.01.630265

    Open questions at the time
    • Preprint, not yet peer-reviewed
    • Functional consequence of individual fuzzy states in cells not tested
    • How phosphorylation reshapes the fuzzy ensemble not addressed
  13. 2025 Low

    Positioned PXN upstream of force buildup in early transformation, showing PXN is required for transient FA and adherens-junction tension and the proliferative advantage of Src-activated cells.

    Evidence siRNA, FRET tension biosensors at FAs/AJs, FAK inhibition, proliferation assays (preprint)

    PMID:bio_10.1101_2025.07.05.663275

    Open questions at the time
    • Preprint, single lab, not peer-reviewed
    • Molecular link between PXN and adherens-junction tension not defined
    • Connection to EGFR-ERK/MRTF-A-SRF axis correlative
  14. 2026 Medium

    Established a self-reinforcing transcriptional circuit and a protein-stabilization role, showing STAT3 drives PXN, PXN reactivates STAT3 via SRC, and PXN stabilizes YB-1 against ubiquitin-mediated degradation.

    Evidence qRT-PCR, WB, mRNA-seq, knockdown, ubiquitination assay in IDH-wildtype GBM

    PMID:41872167

    Open questions at the time
    • Whether PXN regulates YB-1 ubiquitination directly or via an intermediary unknown
    • Mechanism by which PXN controls SRC transcription unresolved

Open questions

Synthesis pass · forward-looking unresolved questions
  • How the competing FAK/Src and ULK1/2 phosphorylation inputs, the fuzzy PXN-FAT ensemble, and PXN phase separation are integrated to set adhesion dynamics in physiological versus tumor contexts remains unresolved.
  • No unified model coupling phosphorylation state to fuzzy-complex conformation and phase behavior
  • In vivo physiological role of PXN phase separation untested
  • Cytoplasmic versus nuclear/transcriptional functions of PXN not mechanistically reconciled

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0060090 molecular adaptor activity 3 GO:0008092 cytoskeletal protein binding 2
Pathway
R-HSA-162582 Signal Transduction 4 R-HSA-1643685 Disease 4 R-HSA-1474244 Extracellular matrix organization 3
Complex memberships
focal adhesion

Evidence

Reading pass · 15 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2023 ULK1/2 directly phosphorylate PXN (paxillin) at S32 and S119, which weakens homotypic PXN interactions and liquid-liquid phase separation of PXN, thereby impairing focal adhesion assembly and inhibiting actin stress fiber formation, cell contraction, and migration. ULK1/2 and FAK/Src have opposing functions on PXN-dependent mechanotransduction, competing for phosphorylation of adjacent serine and tyrosine residues. In vitro kinase assay, site-directed mutagenesis (S32/S119), phase separation assay, focal adhesion assembly imaging, loss-of-function (KO/KD) with migration and mechanical phenotype readouts EMBO reports High 37846507
2025 The disordered N-terminal domain of PXN undergoes significant conformational compaction upon binding the C-terminal focal adhesion targeting (FAT) domain of FAK, forming a 48-kDa multi-modal fuzzy complex with four major interconverting states. Each state has unique sets of contacts involving disordered regions. This PXN–FAT interaction is necessary and sufficient for localizing FAK to focal adhesions. NMR spectroscopy, small-angle X-ray scattering (SAXS), ensemble analysis of disordered complex bioRxivpreprint Medium bio_10.1101_2025.01.01.630265
2021 Substrate stiffness regulates FAK and PXN phosphorylation at focal adhesions in endothelial cells, which promotes Rac1 activation (GDP→GTP transition), subsequent YAP nuclear translocation, and tip cell specification during angiogenesis. Phosphorylated PXN also loosens intercellular connections, further facilitating tip cell formation. Tunable hydrogel substrates, phospho-specific western blotting, Rac1 GTP-pulldown, YAP localization imaging, loss-of-function Bioactive materials Medium 34466738
2018 Cytoplasmic LIF (bearing signal peptide mutation) enhances cancer cell invasion and vascular dissemination mechanistically through modulation of YAP1-FAK/PXN signaling in nasopharyngeal carcinoma, reprogramming collective to mesenchymal invasion mode. IHC correlation, functional invasion assays, pharmacological inhibition (AZD0530/dasatinib), signaling pathway analysis by western blot Nature communications Medium 30504771
2014 LSD1 (lysine-specific demethylase 1) controls transcription of PXN (paxillin) in androgen-independent prostate cancer cells. Upon LSD1 depletion, enhanced LPAR6 signaling promotes cell migration with concomitant phosphorylation of PXN, establishing a LSD1→PXN phosphorylation→migration axis. Transcriptome and cistrome (ChIP-seq) analysis, siRNA knockdown, migration/invasion assays, phospho-PXN western blot Oncogenesis Medium 25285406
2023 ANGPTL4 binding to NRP1 receptor leads to ABL1 tyrosine kinase-dependent phosphorylation of PXN, driving HNSCC tumor cell migration. Pharmacological inhibition of ABL1 (dasatinib) or siRNA silencing of NRP1 or ABL1 blocks PXN phosphorylation and migration. Co-receptor binding assay, siRNA knockdown of NRP1/ABL1, pharmacological inhibition (dasatinib), phospho-PXN western blot, migration assay Cellular signalling Medium 37169211
2024 CXCL5 activates phosphorylation of PXN/AKT signaling cascade in lung cancer cells, leading to upregulation of PD-L1 expression and formation of a positive feedback loop that promotes immune evasion. Gene silencing, western blotting for p-PXN and p-AKT, flow cytometry for PD-L1, in vivo xenograft Journal of experimental & clinical cancer research Medium 39034411
2026 STAT3 directly upregulates PXN transcription in GBM (IDH-wildtype), and PXN reciprocally activates STAT3 by regulating SRC transcription, forming a positive feedback loop. Additionally, PXN stabilizes YB-1 protein by inhibiting its ubiquitin-mediated degradation. qRT-PCR, western blotting, mRNA sequencing, functional knockdown assays, ubiquitination assay Cell death discovery Medium 41872167
2015 miR-212 directly targets the 3'UTR of PXN mRNA to suppress PXN expression; miR-212 overexpression reduces PXN mRNA and protein levels and decreases gastric cancer cell invasion and migration in vitro and in vivo. PXN restoration rescues migration/invasion in miR-212-overexpressing cells. Luciferase reporter assay (3'UTR), miRNA mimic/inhibitor transfection, rescue experiments, in vitro and in vivo invasion assays American journal of cancer research Medium 26693054
2017 STAT3 binds to a binding site in the PXN gene promoter; nobiletin inhibits STAT3/DNA binding activity at this site and STAT3 binding to the PXN promoter, thereby suppressing PXN-mediated tumor angiogenesis in ER+ breast cancer cells downstream of Src/FAK/STAT3 signaling. EMSA, ChIP assay, western blotting, HUVEC angiogenesis assay, RT-PCR International journal of molecular sciences Medium 28468300
2025 PXN knockdown in premalignant Src-activated mammary epithelial cells prevents the transient increase in tensile forces at focal adhesions and at adherens junctions, and abolishes the proliferative advantage, placing PXN functionally upstream of AJ force buildup and EGFR-ERK/MRTF-A-SRF activation during early malignant transformation. siRNA knockdown, FRET-based tension biosensors at FAs and AJs, FAK inhibition, proliferation assays bioRxivpreprint Low bio_10.1101_2025.07.05.663275
2019 ETV4 transcription factor directly upregulates PXN (paxillin) expression; luciferase reporter assays demonstrate direct transcriptional regulation, and PXN inhibition partially abolishes cell proliferation and migration induced by ETV4 in NSCLC cells. Luciferase reporter assay, microarray, gain/loss-of-function, cell proliferation and migration assays Molecular carcinogenesis Medium 31670855
2021 ITGB1 (integrin β1) regulates PXN expression; siRNA knockdown of ITGB1 downregulates PXN and YWHAZ in primary HCC cells. The ITGB1/PXN/YWHAZ/AKT axis promotes HCC cell cycle progression and aggressive tumor behavior. siRNA knockdown, western blot, immunostaining, cell cycle analysis, xenograft Frontiers in cell and developmental biology Low 34977001
2021 miR-497 directly targets CDC42 and ITGB1, whose knockdown inhibits phosphorylation of FAK and PXN (paxillin) and AKT, establishing CDC42/ITGB1/FAK/PXN/AKT as a signaling cascade controlling focal adhesion and gastric cancer cell migration/invasion. CDC42 restoration counteracts miR-497-mediated suppression of this pathway. miRNA overexpression, siRNA knockdown, phospho-western blotting, migration/invasion assay, in vivo metastasis, CDC42 rescue experiment Molecular therapy. Nucleic acids Medium 34589278
2012 Pxn (paxillin) is specifically expressed in pillar cells of the mouse organ of Corti during embryonic and early postnatal ages, localizing as a focal adhesion scaffold protein in the inner ear. Transcriptional and translational reporter expression analysis, in situ hybridization Gene expression patterns Low 22446079

Source papers

Stage 0 corpus · 34 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2017 The MBNL3 splicing factor promotes hepatocellular carcinoma by increasing PXN expression through the alternative splicing of lncRNA-PXN-AS1. Nature cell biology 267 28553938
2021 DDX17-regulated alternative splicing that produced an oncogenic isoform of PXN-AS1 to promote HCC metastasis. Hepatology (Baltimore, Md.) 88 34626132
2017 Nobiletin Inhibits Angiogenesis by Regulating Src/FAK/STAT3-Mediated Signaling through PXN in ER⁺ Breast Cancer Cells. International journal of molecular sciences 69 28468300
2019 ETV4 overexpression promotes progression of non-small cell lung cancer by upregulating PXN and MMP1 transcriptionally. Molecular carcinogenesis 59 31670855
2014 LSD1 controls metastasis of androgen-independent prostate cancer cells through PXN and LPAR6. Oncogenesis 57 25285406
2018 Knockdown of long non-coding RNA XIST inhibits cell viability and invasion by regulating miR-137/PXN axis in non-small cell lung cancer. International journal of biological macromolecules 55 29337100
2021 Matrix stiffness modulates tip cell formation through the p-PXN-Rac1-YAP signaling axis. Bioactive materials 51 34466738
2019 Long non-coding RNA PXN-AS1 suppresses pancreatic cancer progression by acting as a competing endogenous RNA of miR-3064 to upregulate PIP4K2B expression. Journal of experimental & clinical cancer research : CR 51 31488171
2016 Colonisation of poultry by Salmonella Enteritidis S1400 is reduced by combined administration of Lactobacillus salivarius 59 and Enterococcus faecium PXN-33. Veterinary microbiology 41 28110775
2021 ITGB1 Drives Hepatocellular Carcinoma Progression by Modulating Cell Cycle Process Through PXN/YWHAZ/AKT Pathways. Frontiers in cell and developmental biology 37 34977001
2015 MicroRNA-212 functions as an epigenetic-silenced tumor suppressor involving in tumor metastasis and invasion of gastric cancer through down-regulating PXN expression. American journal of cancer research 35 26693054
2024 CXCL5 impedes CD8+ T cell immunity by upregulating PD-L1 expression in lung cancer via PXN/AKT signaling phosphorylation and neutrophil chemotaxis. Journal of experimental & clinical cancer research : CR 33 39034411
2018 Cytoplasmic LIF reprograms invasive mode to enhance NPC dissemination through modulating YAP1-FAK/PXN signaling. Nature communications 31 30504771
2020 SOX9-activated PXN-AS1 promotes the tumorigenesis of glioblastoma by EZH2-mediated methylation of DKK1. Journal of cellular and molecular medicine 29 32329150
2023 An ULK1/2-PXN mechanotransduction pathway suppresses breast cancer cell migration. EMBO reports 25 37846507
2019 Long noncoding RNA PXN-AS1-L promotes non-small cell lung cancer progression via regulating PXN. Cancer cell international 25 30679933
2019 Long noncoding RNA PXN-AS1-L promotes the malignancy of nasopharyngeal carcinoma cells via upregulation of SAPCD2. Cancer medicine 24 31173488
2021 miR-497 defect contributes to gastric cancer tumorigenesis and progression via regulating CDC42/ITGB1/FAK/PXN/AKT signaling. Molecular therapy. Nucleic acids 19 34589278
2020 Promotive effect of Talin-1 protein on gastric cancer progression through PTK2-PXN-VCL-E-Cadherin-CAPN2-MAPK1 signaling axis. Journal of clinical laboratory analysis 17 32951272
2018 The overexpression of PXN promotes tumor progression and leads to radioresistance in cervical cancer. Future oncology (London, England) 17 29318915
2017 Semisynthetic oleanane triterpenoids inhibit migration and invasion of human breast cancer cells through downregulated expression of the ITGB1/PTK2/PXN pathway. Chemico-biological interactions 13 28322779
2020 Silencing lncRNA XIST exhibits antiproliferative and proapoptotic effects on gastric cancer cells by up-regulating microRNA-132 and down-regulating PXN. Aging 12 33154189
2014 A role for peroxidasin PXN-1 in aspects of C. elegans development. Molecules and cells 10 25475546
2022 LncRNA FIRRE promotes the proliferation and metastasis of hepatocellular carcinoma by regulating the expression of PXN through interacting with MBNL3. Biochemical and biophysical research communications 9 35988459
2012 Specific expression of Kcna10, Pxn and Odf2 in the organ of Corti. Gene expression patterns : GEP 9 22446089
2023 Angiopoietin-like 4 induces head and neck squamous cell carcinoma cell migration through the NRP1/ABL1/PXN pathway. Cellular signalling 8 37169211
2020 MiR-216b regulates the tumorigenesis of gastric cancer by targeting PXN. Pathology, research and practice 7 33422779
2023 Upregulation of MAPKAPK5-AS1, PXN-AS1 and URB1-AS1 lncRNAs in non-functioning pituitary adenoma. Journal of cellular and molecular medicine 6 37154079
2024 Long non-coding RNA PXN-AS1 promotes glutamine synthetase-mediated chronic myeloid leukemia BCR::ABL1-independent resistance to Imatinib via cell cycle signaling pathway. Cancer cell international 5 38811958
2024 Trimethylamine N-Oxide Aggravates Neuro-Inflammation via lncRNA Fendrr/miR-145-5p/PXN Axis in Vascular Dementia Rats. Journal of inflammation research 5 39464336
2025 The pxn-lgbp-ap-1 pathway restricts virus proliferation by inducing the expression of Cru1 in crayfish. Communications biology 2 41339753
2020 Correction to: Long non-coding RNA PXN-AS1 suppresses pancreatic cancer progression by acting as a competing endogenous RNA of miR-3064 to upregulate PIP4K2B expression. Journal of experimental & clinical cancer research : CR 1 32381033
2026 Deciphering the STAT3-PXN positive feedback loop in GBM, IDH-wildtype: transcriptional regulation and inhibition of YB-1 ubiquitination. Cell death discovery 0 41872167
2025 Promotive role of MBNL3 and PXN genes expressions with lncRNA PXN-AS1-L on gastric cancer. Biochemistry and biophysics reports 0 40678802

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