Affinage

PSME1

Proteasome activator complex subunit 1 · UniProt Q06323

Round 2 corrected
Length
249 aa
Mass
28.7 kDa
Annotated
2026-04-28
46 papers in source corpus 14 papers cited in narrative 14 extracted findings

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

PSME1 (PA28α) is a subunit of the PA28 proteasome activator complex that forms a heptameric ring capping the 20S proteasome core particle, stimulating its peptidase activity and shaping the repertoire of peptides available for MHC class I antigen presentation and broader protein homeostasis. The crystal structure reveals a barrel-shaped heptamer whose binding opens a gated pore in the proteasome α-ring to permit substrate and product passage (PMID:9403698); overexpression at IFN-γ–inducible levels enhances class I–restricted antigen presentation independently of immunoproteasome subunit exchange, while double-knockout mice lose processing of select antigens such as TRP2 (PMID:8610016, PMID:11169410, PMID:11689430). Beyond antigen processing, PSME1-mediated proteasome activation degrades β-catenin to suppress Wnt signaling in bone cells (PMID:34838695), degrades CDK15 to promote breast cancer invasion (PMID:31824858), regulates proteasome load and sensitivity to proteasome inhibitors in multiple myeloma (PMID:33318477), and stabilizes HBV core protein against 26S proteasome degradation to facilitate viral replication (PMID:39281837). PSME1 constitutively localizes to the centrosome together with the 20S proteasome and chaperones, where the complex expands upon proteasome inhibition or accumulation of misfolded proteins, implicating it in centrosome-based protein quality control (PMID:10225950).

Mechanistic history

Synthesis pass · year-by-year structured walk · 11 steps
  1. 1996 High

    Establishing that PA28α has an in vivo function in antigen processing resolved whether this proteasome activator operates only in vitro, showing that physiological-level overexpression directly enhances MHC class I–restricted epitope presentation.

    Evidence Stable transfection of PA28α in murine fibroblasts with CTL recognition assays for two viral antigens

    PMID:8610016

    Open questions at the time
    • Mechanism by which PA28α alters the peptide repertoire was unknown
    • Relative contribution of PA28α versus PA28β was not separated
    • Whether PA28α acts on all antigens or only a subset was untested
  2. 1997 High

    Solving the crystal structure of the PA28α heptamer answered how the activator physically engages the proteasome, revealing a barrel that opens a gated pore in the 20S α-ring to allow substrate/product transit.

    Evidence 2.8 Å X-ray crystallography of recombinant human PA28α

    PMID:9403698

    Open questions at the time
    • Structure of the PA28α–20S complex itself was not determined
    • Whether the heteromeric PA28α/β ring adopts the same architecture was unresolved
    • Conformational dynamics during gating remained unknown
  3. 1999 High

    Localizing PA28α/β to the centrosome together with the 20S proteasome and chaperones revealed a constitutive proteasome quality-control platform at this organelle, expanding PA28α's role beyond antigen processing.

    Evidence Immunofluorescence colocalization with γ-tubulin, density-gradient fractionation of purified centrosomes, and proteasome inhibitor challenge in HEK293 and HeLa cells

    PMID:10225950

    Open questions at the time
    • The substrates degraded at the centrosome by PA28-activated proteasomes were not identified
    • Whether centrosomal localization is essential for PA28α's antigen-processing role was unclear
  4. 2000 High

    Demonstrating that PA28α/β enhances antigen presentation without altering proteasome subunit composition showed that the activator acts directly on 20S peptidase activity rather than by promoting immunoproteasome assembly.

    Evidence Co-transfection of PA28α/β in fibroblasts with proteasome subunit composition analysis and CTL assays

    PMID:11169410

    Open questions at the time
    • The precise cleavage products altered by PA28 binding were not characterized
    • Whether PA28 changes cleavage site preference or only product release rate was unresolved
  5. 2001 High

    PA28α/β double-knockout mice showed that the activator is dispensable for most antigen presentation but essential for processing specific epitopes (e.g., TRP2), defining PA28 as a substrate-selective processing factor rather than a global antigen-processing requirement.

    Evidence Genetic double-KO mice with IFN-γ stimulation and antigen-specific CTL assays for multiple antigens

    PMID:11689430

    Open questions at the time
    • Rules governing which epitopes require PA28 were not defined
    • Compensatory roles of PA28γ in vivo were not assessed
    • Whether PA28 dependence maps to primary sequence or proteasome cleavage kinetics was unknown
  6. 2016 Medium

    Finding that PA28α/β deletion protects against diabetic microvascular injury extended PSME1's physiological relevance to chronic metabolic disease, linking its proteasome-activating function to inflammatory mediator expression under high glucose.

    Evidence PA28α/β double-KO mice in STZ-induced diabetes, mesangial and retinal pericyte cultures, PA28-blocking peptides, OPN/MCP-1 readouts

    PMID:27830089

    Open questions at the time
    • The specific proteasome substrates mediating OPN/MCP-1 upregulation were not identified
    • Whether PA28α or PA28β is the rate-limiting subunit in this context was not determined
    • Blocking peptide specificity in vivo was not fully validated
  7. 2019 Medium

    Identification of CDK15 as a target degraded via PA28α/β-activated immunoproteasome placed PSME1 in a pro-invasive axis in breast cancer, establishing a proteasome-dependent mechanism for metastasis promotion.

    Evidence siRNA knockdown of PA28α/β and β5i in breast cancer cells with migration/invasion assays and CDK15 protein level measurement

    PMID:31824858

    Open questions at the time
    • Direct ubiquitination or proteasomal degradation of CDK15 was not reconstituted
    • In vivo metastasis data were limited
    • Whether CDK15 degradation is immunoproteasome-specific was not conclusively shown
  8. 2020 Medium

    Showing that PA28α knockdown reduces proteasome load and confers resistance to proteasome inhibitors in myeloma revealed PSME1 as a determinant of proteasome dependence in cancer, with therapeutic implications.

    Evidence shRNA/siRNA knockdown in MM cell lines with proteasome activity and bortezomib/carfilzomib sensitivity assays

    PMID:33318477

    Open questions at the time
    • The mechanism linking reduced PA28α to decreased proteasome load was not delineated
    • Clinical correlation with patient drug response was not established
    • Whether PA28α overexpression is sufficient to resensitize resistant cells was not tested
  9. 2021 Medium

    Two studies in 2021 expanded PSME1's non-immune roles: PA28α overexpression in vivo reduced hippocampal protein aggregation and improved cognition independently of boosted proteasome peptidase activity, while recombinant PSME1/2 suppressed β-catenin to inhibit Wnt signaling and osteogenesis, establishing PA28α as a modulator of proteostasis and developmental signaling beyond antigen processing.

    Evidence PA28α transgenic mice with behavioral testing and aggregation assays; recombinant PSME1/2 in osteoblast/osteoclast cultures with β-catenin western blot and OVX mouse model

    PMID:33720528 PMID:34838695

    Open questions at the time
    • The anti-aggregation mechanism independent of proteasome activation was not identified
    • Whether β-catenin is a direct proteasomal substrate of PA28-activated proteasomes was not shown
    • Sex-specific effects (female-only cognitive benefit) were unexplained mechanistically
  10. 2023 Medium

    Discovery that PSME1 directly binds HBV core protein and shields it from 26S proteasome degradation revealed a virus-co-opted stabilization function, demonstrating that PA28α can also inhibit specific substrate degradation rather than only promote it.

    Evidence APEX2 proximity labeling, co-IP, siRNA knockdown with HBc stability and HBV transcription assays

    PMID:39281837

    Open questions at the time
    • Structural basis for PA28α–HBc interaction was not determined
    • Whether stabilization requires the assembled heptamer or monomeric PA28α was not tested
    • Relevance to HBV pathogenesis in vivo was not demonstrated
  11. 2024 Medium

    Identification of a CCDC92–PA28α–ABCA1 axis in podocytes showed that upstream regulators can channel PSME1 activity toward degradation of specific membrane transporters, broadening the list of physiologically relevant PA28α substrates.

    Evidence Podocyte-specific Ccdc92 KO mice, co-IP, cholesterol efflux and ABCA1 stability assays under high glucose

    PMID:38228909

    Open questions at the time
    • Whether PA28α activates 20S proteasomes or an alternative pathway for ABCA1 degradation was not distinguished
    • Direct ubiquitination status of ABCA1 in this axis was not characterized

Open questions

Synthesis pass · forward-looking unresolved questions
  • Key open questions include the structural basis of heteromeric PA28α/β ring assembly on the 20S proteasome, the rules determining which substrates require PA28-activated versus 26S-mediated degradation, and the mechanism underlying PA28α's proteasome-activity-independent anti-aggregation function.
  • No high-resolution structure of the PA28α/β–20S holocomplex
  • No systematic identification of PA28-dependent proteasomal substrates
  • Anti-aggregation mechanism independent of peptidase activation is uncharacterized

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0098772 molecular function regulator activity 5 GO:0005198 structural molecule activity 2
Localization
GO:0005829 cytosol 2 GO:0005815 microtubule organizing center 1
Pathway
R-HSA-392499 Metabolism of proteins 4 R-HSA-1643685 Disease 3 R-HSA-168256 Immune System 3 R-HSA-162582 Signal Transduction 1
Complex memberships
PA28 (11S REG)PA28-20S hybrid proteasome

Evidence

Reading pass · 14 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
1996 Overexpression of PA28alpha (PSME1) at levels similar to IFN-gamma induction markedly enhanced MHC class I-restricted presentation of murine cytomegalovirus pp89 epitope and influenza nucleoprotein in mouse fibroblasts, demonstrating an in vivo role for PA28alpha in antigen processing. Stable transfection of murine fibroblasts with human or murine PA28alpha gene, followed by cytotoxic T cell recognition assays Nature High 8610016
1997 Crystal structure of human REGalpha (PA28alpha/PSME1) at 2.8 Å resolution revealed a heptameric barrel-shaped assembly with a central channel (20 Å opening at one end, 30 Å at the proteasome-binding surface), suggesting that REG binding causes conformational changes that open a pore in proteasome alpha-subunits to allow substrate/product passage. X-ray crystallography of human recombinant REGalpha heptamer Nature High 9403698
1999 The human PSME1 gene (encoding PA28alpha) comprises 11 exons and maps to chromosome 14q11.2, near PSME2 (PA28beta) and ISGF3G, consistent with gene duplication during vertebrate evolution; both genes are induced by IFN-gamma. Genomic sequencing and chromosomal mapping of PSME1 and PSME2 Immunogenetics Medium 10199920
1999 PA28 (including PA28alpha/PSME1) concentrates at the centrosome under basal conditions along with the 20S proteasome, PA700, ubiquitin, Hsp70, and Hsp90; this centrosomal complex enlarges in response to proteasome inhibition or accumulation of misfolded proteins, indicating that the centrosome acts as a scaffold for the proteasome-activator machinery during protein quality control. Immunofluorescence colocalization with gamma-tubulin, density gradient fractionation of purified centrosomes, and proteasome inhibitor challenge in HEK293 and HeLa cells The Journal of cell biology High 10225950
2000 PA28alpha/beta (including PSME1) can enhance MHC class I-restricted antigen presentation independently of changes in 20S proteasome subunit composition or immunoproteasome assembly, as shown by enhanced pp89 epitope presentation in fibroblast transfectants overexpressing both PA28 subunits with unchanged proteasome subunit composition. Stable co-transfection of PA28alpha and PA28beta in fibroblasts, proteasome subunit composition analysis, and cytotoxic T cell recognition assay European journal of immunology High 11169410
2001 PA28alpha/beta double-knockout mice retain immunoproteasome assembly after IFN-gamma treatment and show normal antigen presentation for most antigens but almost completely lose the ability to process the melanoma antigen TRP2-derived peptide, demonstrating that PA28alpha/beta is essential for processing of certain specific antigens but not required globally for antigen presentation. Generation of PA28alpha/PA28beta double-knockout mice, IFN-gamma stimulation, ovalbumin and influenza antigen processing assays, TRP2 peptide presentation assay The EMBO journal High 11689430
2001 During dendritic cell maturation, PA28alpha/beta coprecipitates with 13S/16S proteasome precursor complexes and associates equally with mature constitutive and immunoproteasomes, suggesting PA28alpha (PSME1) participates in proteasome assembly intermediates but does not preferentially drive immunoproteasome assembly in DC. Co-immunoprecipitation of PA28alpha/beta with proteasome precursor complexes in maturing dendritic cells, quantitative mRNA and protein analysis European journal of immunology Medium 11745344
2016 Genetic deletion of PA28alpha and PA28beta protected diabetic mice from renal and retinal microvascular injury; PA28-mediated proteasome activity in mesangial cells and retinal pericytes under high glucose promotes expression of OPN and MCP-1; this was suppressed by peptides blocking PA28 binding to the 20S proteasome, demonstrating that PA28alpha (PSME1) drives diabetic microvascular injury through modulation of proteasome activity. PA28alpha/PA28beta double-knockout mice in STZ-induced diabetes model, cultured mesangial cells and retinal pericytes under high glucose, PA28-blocking peptides, OPN/MCP-1 expression analysis International journal of nephrology Medium 27830089
2019 PA28alpha/beta (PSME1/PSME2) promotes breast cancer cell migration, invasion, and metastasis by downregulating CDK15 protein; knockdown of PA28alpha/beta or immunoproteasome subunit beta5i upregulates CDK15, and loss of CDK15 is important for tumor invasion, placing PSME1 upstream of CDK15 in a proteasome-dependent invasion pathway. siRNA knockdown of PA28alpha/beta and beta5i in breast cancer cells, migration/invasion assays, western blot for CDK15 protein levels Frontiers in oncology Medium 31824858
2020 PA28alpha (PSME1) is upregulated in multiple myeloma cells and is required for myeloma cell growth and proliferation; downregulation of PA28alpha reduces both proteasomal load and activity, shifting protein homeostasis away from proteasome dependence and causing resistance to proteasome inhibitors. shRNA/siRNA knockdown of PA28alpha in MM cell lines, cell proliferation assays, proteasome activity assays, proteasome inhibitor sensitivity assays Blood cancer journal Medium 33318477
2021 Overexpression of PA28alpha (PSME1) in female mice enhances hippocampal ability to prevent protein aggregation throughout aging and improves cognitive function (memory in young, exploratory behavior in old mice), while paradoxically lowering PA28-dependent proteasome capacity in heart and hippocampus, suggesting that PA28alpha's anti-aggregation effect is partially independent of its role in boosting proteasome peptidase activity. PA28alpha transgenic overexpression in C57BL/6N×BALB/c mice, behavioral testing (Morris water maze, open field), protein aggregation assays on hippocampal extracts, proteasome activity assays across ages Aging cell Medium 33720528
2021 PSME1/2 recombinant protein inhibits osteogenesis and promotes osteoclast formation in vitro, and PSME1/2 suppresses beta-catenin protein levels to limit Wnt/beta-catenin signaling; the proteasome inhibitor carfilzomib inhibits PSME1/2 proteasome activities, increases beta-catenin levels and promotes its nuclear translocation, thereby activating Wnt signaling and promoting osteogenesis in vitro and in an OVX mouse model. Recombinant PSME1/2 protein treatment of osteoblast/osteoclast cultures, siRNA knockdown, western blot for beta-catenin, carfilzomib treatment, OVX mouse model with micro-CT Molecular and cellular endocrinology Medium 34838695
2024 CCDC92 promotes degradation of ABCA1 by regulating PA28alpha (PSME1)-mediated proteasome activity, thereby reducing cholesterol efflux and causing lipid accumulation in podocytes; this defines a CCDC92/PA28alpha/ABCA1/cholesterol efflux axis contributing to diabetic kidney disease. Podocyte-specific Ccdc92 knockout mice, co-immunoprecipitation, cholesterol efflux assays, ABCA1 protein stability assays, western blot in high-glucose-treated podocytes Acta pharmacologica Sinica Medium 38228909
2023 PSME1 interacts directly with HBV core protein (HBc) and inhibits its degradation by the 26S proteasome, thereby stabilizing HBc and promoting HBV replication; PSME1 knockdown decreases HBc protein levels and inhibits HBV transcription. APEX2-based proximity labeling to identify HBc-interacting proteins, co-immunoprecipitation, PSME1 siRNA knockdown, HBc protein stability assays, HBV transcription assays in HBV infection system Genes & diseases Medium 39281837

Source papers

Stage 0 corpus · 46 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
1996 Structure and functions of the 20S and 26S proteasomes. Annual review of biochemistry 2108 8811196
2005 Towards a proteome-scale map of the human protein-protein interaction network. Nature 2090 16189514
2002 Isolation of a human gene that inhibits HIV-1 infection and is suppressed by the viral Vif protein. Nature 1924 12167863
2005 A human protein-protein interaction network: a resource for annotating the proteome. Cell 1704 16169070
2002 Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Proceedings of the National Academy of Sciences of the United States of America 1479 12477932
2003 Broad antiretroviral defence by human APOBEC3G through lethal editing of nascent reverse transcripts. Nature 1236 12808466
2003 DNA deamination mediates innate immunity to retroviral infection. Cell 1150 12809610
2015 The BioPlex Network: A Systematic Exploration of the Human Interactome. Cell 1118 26186194
2017 Architecture of the human interactome defines protein communities and disease networks. Nature 1085 28514442
2015 A human interactome in three quantitative dimensions organized by stoichiometries and abundances. Cell 1015 26496610
2003 Induction of APOBEC3G ubiquitination and degradation by an HIV-1 Vif-Cul5-SCF complex. Science (New York, N.Y.) 1006 14564014
2014 A proteome-scale map of the human interactome network. Cell 977 25416956
2003 The cytidine deaminase CEM15 induces hypermutation in newly synthesized HIV-1 DNA. Nature 912 12808465
2013 Landscape of the PARKIN-dependent ubiquitylome in response to mitochondrial depolarization. Nature 870 23503661
2020 A reference map of the human binary protein interactome. Nature 849 32296183
2018 VIRMA mediates preferential m6A mRNA methylation in 3'UTR and near stop codon and associates with alternative polyadenylation. Cell discovery 829 29507755
2003 The antiretroviral enzyme APOBEC3G is degraded by the proteasome in response to HIV-1 Vif. Nature medicine 798 14528300
2003 Species-specific exclusion of APOBEC3G from HIV-1 virions by Vif. Cell 763 12859895
2021 Dual proteome-scale networks reveal cell-specific remodeling of the human interactome. Cell 705 33961781
2012 A census of human soluble protein complexes. Cell 689 22939629
2003 HIV-1 Vif protein binds the editing enzyme APOBEC3G and induces its degradation. Nature medicine 679 14528301
2011 Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Briefings in bioinformatics 656 21873635
2003 HIV-1 Vif blocks the antiviral activity of APOBEC3G by impairing both its translation and intracellular stability. Molecular cell 607 14527406
2003 Hypermutation of HIV-1 DNA in the absence of the Vif protein. Science (New York, N.Y.) 570 12750511
2004 The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Genome research 438 15489334
2015 A Dynamic Protein Interaction Landscape of the Human Centrosome-Cilium Interface. Cell 433 26638075
2022 OpenCell: Endogenous tagging for the cartography of human cellular organization. Science (New York, N.Y.) 432 35271311
1999 Dynamic association of proteasomal machinery with the centrosome. The Journal of cell biology 427 10225950
2015 Panorama of ancient metazoan macromolecular complexes. Nature 407 26344197
2003 The Vif protein of HIV triggers degradation of the human antiretroviral DNA deaminase APOBEC3G. Current biology : CB 405 14614829
1996 A role for the proteasome regulator PA28alpha in antigen presentation. Nature 294 8610016
1997 Structure of the proteasome activator REGalpha (PA28alpha). Nature 150 9403698
2001 Immunoproteasome assembly and antigen presentation in mice lacking both PA28alpha and PA28beta. The EMBO journal 132 11689430
2000 The proteasome regulator PA28alpha/beta can enhance antigen presentation without affecting 20S proteasome subunit composition. European journal of immunology 56 11169410
2001 Pronounced up-regulation of the PA28alpha/beta proteasome regulator but little increase in the steady-state content of immunoproteasome during dendritic cell maturation. European journal of immunology 55 11745344
1999 Organization of the genes encoding the human proteasome activators PA28alpha and beta. Immunogenetics 17 10199920
2019 PA28α/β Promote Breast Cancer Cell Invasion and Metastasis via Down-Regulation of CDK15. Frontiers in oncology 16 31824858
2021 Carfilzomib alleviated osteoporosis by targeting PSME1/2 to activate Wnt/β-catenin signaling. Molecular and cellular endocrinology 12 34838695
2016 Proteasome Activators, PA28α and PA28β, Govern Development of Microvascular Injury in Diabetic Nephropathy and Retinopathy. International journal of nephrology 11 27830089
2020 Downregulation of PA28α induces proteasome remodeling and results in resistance to proteasome inhibitors in multiple myeloma. Blood cancer journal 10 33318477
2024 CCDC92 promotes podocyte injury by regulating PA28α/ABCA1/cholesterol efflux axis in type 2 diabetic mice. Acta pharmacologica Sinica 9 38228909
2021 PA28α overexpressing female mice maintain exploratory behavior and capacity to prevent protein aggregation in hippocampus as they age. Aging cell 9 33720528
2004 Sequence characterization, polymorphism and chromosomal localizations of the porcine PSME1 and PSME2 genes. Animal genetics 9 15373739
2013 Genomic structural characterization and transcriptional expression analysis of proteasome activator PA28α and PA28β subunits from Oplegnathus fasciatus. Fish & shellfish immunology 4 23916540
2023 The proteasome activator subunit PSME1 promotes HBV replication by inhibiting the degradation of HBV core protein. Genes & diseases 2 39281837
2025 Immunoproteasome components LMP2, PSME1, and PSME2 as novel tissue biomarkers predicting response and survival in neoadjuvant chemoimmunotherapy for resectable NSCLC. Frontiers in immunology 1 41035633