Affinage

PSMB4

Proteasome subunit beta type-4 · UniProt P28070

Length
264 aa
Mass
29.2 kDa
Annotated
2026-06-10
32 papers in source corpus 13 papers cited in narrative 13 extracted findings
Cross-family judge vs UniProt: Affinage preferred faithfulness: 4/5 claims corpus-supported (80%)

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

PSMB4 is the β7 subunit of the 20S proteasome core and functions both as an essential structural component of the proteasome and as a node coupling ubiquitin-dependent protein turnover to cell survival, inflammatory signaling, and antiviral defense (PMID:15660529, PMID:32651614). As a core subunit it is the docking site for substrate-delivery and regulatory factors: the E3 ubiquitin ligase SNEV/Prp19 binds PSMB4 directly and escorts ubiquitinated substrates to the proteasome, an interaction conserved between yeast and mammals (PMID:15660529), while the presynaptic scaffold bassoon binds PSMB4 through three interfaces and sterically interferes with 20S core assembly to attenuate all proteasomal endopeptidase activities, causing accumulation of proteasomal substrates (PMID:32651614). PSMB4 was the first proteasomal subunit shown to have oncogenic properties, being required for cancer cell survival and tumor growth across many cell lines (PMID:24755469). In tumor contexts it is transcriptionally driven by FoxM1 (PMID:31699366) and promotes proliferation, invasion, and angiogenesis through an NF-κB axis—activating NF-κB and upregulating miR-21 (PMID:25656574), degrading IκBα to sustain NF-κB activity (PMID:33954843), and elevating pFAK/MMP9, MLC, and VEGF-B/VEGFR2 to support migration and neovascularization (PMID:29414809, PMID:38791597). PSMB4 also acts as an antiviral restriction factor: it binds and destabilizes influenza A virus NS1 (PMID:36298834) and PRRSV Nsp1α, mediating K63-linked ubiquitination of Nsp1α at K169 to route it for autolysosomal degradation via LC3 while activating NF-κB/type I interferon signaling, with binding mapped to the PSMB4 C-terminus (aa 250–264) and critical residues S146/M148 (PMID:36943051, PMID:40192860).

Mechanistic history

Synthesis pass · year-by-year structured walk · 11 steps
  1. 2005 High

    Established that PSMB4 serves as a physical docking point linking ubiquitin-tagged substrate delivery to the proteasome core, answering how an E3 ligase couples to the 20S particle.

    Evidence Reciprocal Co-IP, yeast two-hybrid, and immunofluorescence with proteasome inhibition in mammalian and yeast systems

    PMID:15660529

    Open questions at the time
    • No structural definition of the SNEV-PSMB4 interface
    • Whether this interaction modulates proteasome catalytic activity not addressed
  2. 2014 High

    Demonstrated that a core proteasomal subunit can itself be oncogenic, reframing PSMB4 from a passive structural part to a survival-promoting cancer dependency.

    Evidence RNAi loss-of-function across 32 cancer cell lines with in vivo xenograft validation

    PMID:24755469

    Open questions at the time
    • Mechanism distinguishing PSMB4 dependency from general proteasome requirement unclear
    • No downstream effectors identified in this study
  3. 2015 Medium

    Placed PSMB4 upstream of an NF-κB–miR-21 proliferative axis and linked it to neuronal apoptosis, beginning to define the signaling consequences of its expression.

    Evidence Gain/loss-of-function with miR-21 rescue in myeloma cells; siRNA in primary neurons and LPS neuroinflammation model

    PMID:25656574 PMID:26282113

    Open questions at the time
    • No biochemical mechanism for how PSMB4 activates NF-κB shown here
    • Single-lab observations
  4. 2016 Low

    Extended PSMB4's regulatory reach to the RIP3/MLKL necroptosis pathway following spinal cord injury.

    Evidence Expression analysis, co-localization, and gain/loss-of-function in a TNF-α necroptosis cell model

    PMID:27514644

    Open questions at the time
    • Pathway placement based on co-localization and expression without direct biochemical interaction
    • Not independently confirmed
  5. 2018 Medium

    Identified pFAK and MMP9 as downstream effectors through which PSMB4 drives glioblastoma invasion, connecting it to an invasion/migration program.

    Evidence siRNA knockdown with proliferation, invasion, apoptosis assays and orthotopic xenograft

    PMID:29414809

    Open questions at the time
    • Direct biochemical link between PSMB4 and FAK/MMP9 regulation not established
    • Single lab
  6. 2019 Medium

    Defined the upstream transcriptional control of PSMB4 by showing FoxM1 directly binds its promoter, establishing a FoxM1–PSMB4 axis driving proliferation.

    Evidence ChIP/promoter binding, siRNA, overexpression, rescue, and TCGA correlation in cervical cancer

    PMID:31699366

    Open questions at the time
    • Whether FoxM1 regulation generalizes across cancer types not tested
    • Single lab
  7. 2020 High

    Revealed that PSMB4 is a regulatory target whose engagement controls proteasome activity, showing bassoon binds PSMB4 via three interfaces to sterically block 20S assembly and locally tune proteasomal degradation at synapses.

    Evidence Co-IP, deletion mapping, proteasome activity assays, bassoon KO mouse synaptic fractions, and rescue in primary neurons

    PMID:32651614

    Open questions at the time
    • Atomic structure of the bassoon-PSMB4 interface not resolved
    • Whether other scaffolds use a similar mechanism unknown
  8. 2021 Medium

    Provided a direct molecular mechanism for PSMB4-driven NF-κB activation by showing it binds IκBα and promotes its proteasomal degradation, protecting cardiomyocytes from apoptosis.

    Evidence Co-IP, gain/loss-of-function in cardiomyocyte hypoxia/reoxygenation model with NF-κB and apoptosis readouts

    PMID:33954843

    Open questions at the time
    • Whether IκBα is a direct catalytic substrate of the PSMB4-containing proteasome or recruited indirectly not resolved
    • Single lab
  9. 2022 Medium

    Established PSMB4 as an antiviral restriction factor by showing it binds influenza A NS1 and promotes its proteasome-dependent degradation to restore interferon responses.

    Evidence Yeast two-hybrid with domain mapping, Co-IP, confocal microscopy, MG132 protein-level assays, and IAV replication assays

    PMID:36298834

    Open questions at the time
    • Ubiquitin-linkage type and degradation route for NS1 not defined
    • Single lab
  10. 2023 High

    Defined a complete antiviral mechanism in which PSMB4 mediates K63-linked ubiquitination of PRRSV Nsp1α at K169 for LC3-dependent autolysosomal degradation while activating NF-κB/IFN, with the interaction mapped to the PSMB4 C-terminus.

    Evidence Yeast two-hybrid, Co-IP, GST pulldown, confocal, K63 ubiquitination assays, autolysosome and NF-κB assays with PRRSV replication readouts

    PMID:36943051

    Open questions at the time
    • How a 20S core subunit catalyzes K63-linked ubiquitination mechanistically unexplained
    • Whether PSMB4 acts as or recruits the E3 ligase unclear
  11. 2025 Medium

    Mapped the specific PSMB4 residues S146 and M148 required for binding and degrading PRRSV Nsp1α, refining the structural basis of antiviral recognition.

    Evidence Yeast two-hybrid, Co-IP, confocal, structure prediction, and truncated/point mutant assays with viral protein readouts

    PMID:40192860

    Open questions at the time
    • Predicted rather than experimental structure
    • Single lab

Open questions

Synthesis pass · forward-looking unresolved questions
  • How PSMB4's structural role in the 20S core mechanistically gives rise to its substrate-selective, ubiquitin-linkage-specific, and signaling-regulatory activities remains unresolved.
  • No structural model of PSMB4 within an active proteasome bound to its regulatory partners
  • Unclear whether oncogenic and antiviral functions reflect proteasome-intrinsic activity or moonlighting interactions
  • Mechanism by which PSMB4 directs K63 ubiquitination toward the autolysosomal pathway undefined

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0140096 catalytic activity, acting on a protein 3 GO:0005198 structural molecule activity 2 GO:0060089 molecular transducer activity 2
Localization
GO:0005829 cytosol 2 GO:0005634 nucleus 1
Pathway
R-HSA-392499 Metabolism of proteins 3 R-HSA-162582 Signal Transduction 2 R-HSA-1643685 Disease 2 R-HSA-168256 Immune System 2
Complex memberships
20S proteasome core

Evidence

Reading pass · 13 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2005 The E3 ubiquitin ligase SNEV (senescence evasion factor) directly binds to PSMB4, the β7 subunit of the 20S proteasome, physically linking the ubiquitin-proteasome system to the spliceosome. Upon proteasome inhibition, SNEV co-localization with PSMB4 increases, and SNEV co-localizes with ubiquitin without itself being ubiquitinated, suggesting SNEV escorts substrates to the proteasome via this interaction. The yeast homologue of SNEV (Prp19) also interacts with the yeast β7 subunit, indicating evolutionary conservation. Co-immunoprecipitation, yeast two-hybrid, immunofluorescence microscopy, proteasome inhibition experiments The Biochemical journal High 15660529
2014 PSMB4 was identified as the first proteasomal subunit with oncogenic properties: RNAi-mediated loss-of-function reduced cancer cell survival across a panel of 32 cancer cell lines, and functional assays demonstrated PSMB4 is necessary for tumor cell survival and tumor growth in vivo. RNAi loss-of-function screen across 32 cancer cell lines, in vivo xenograft tumor growth assays Cancer research High 24755469
2015 PSMB4 overexpression in multiple myeloma cells activates NF-κB signaling and upregulates miR-21, promoting cell growth and colony formation. PSMB4 knockdown suppresses NF-κB activity and miR-21 expression. Re-expression of miR-21 rescues the growth suppression caused by PSMB4 knockdown, placing PSMB4 upstream of NF-κB–miR-21 in a proliferative signaling axis. Ectopic overexpression and siRNA knockdown, NF-κB reporter assays, miRNA expression analysis, rescue experiments with miR-21 re-expression Biochemical and biophysical research communications Medium 25656574
2015 PSMB4 knockdown by siRNA in a neuroinflammation model reduces the upregulation of active caspase-3, cyclin D1, and CDK4 in cortical primary neurons, indicating PSMB4 contributes to neuronal apoptosis downstream of LPS-induced neuroinflammation via these apoptosis- and cell-cycle-related proteins. siRNA knockdown in primary neurons and rat LPS neuroinflammation model, western blotting, immunohistochemistry Journal of molecular histology Medium 26282113
2016 PSMB4 expression is upregulated in neurons after spinal cord injury, co-localizing with RIP3-positive neurons. Overexpression and knockdown of PSMB4 modulates RIP3 and MLKL levels in a TNF-α-induced necroptosis cell model, implicating PSMB4 in regulation of the RIP3/MLKL necroptosis pathway. Western blot, immunohistochemistry, immunofluorescence staining, PSMB4 overexpression and knockdown in necroptosis cell model Neurochemical research Low 27514644
2018 PSMB4 knockdown in glioblastoma cells decreases proliferation, migration, and invasion, induces cell cycle arrest and apoptosis, and reduces expression of phosphorylated focal adhesion kinase (pFAK) and matrix metallopeptidase 9 (MMP9) in vivo, identifying these as downstream effectors of PSMB4-driven invasion. siRNA knockdown, MTT assay, Annexin V/PI flow cytometry, wound healing and Transwell invasion assays, western blotting, orthotopic xenograft mouse model Cellular physiology and biochemistry Medium 29414809
2019 FoxM1, a master regulator of cell division, directly binds to the promoter region of PSMB4 and transcriptionally activates PSMB4 expression. Loss-of-function and rescue experiments confirm PSMB4 is required downstream of FoxM1 to drive cervical cancer cell proliferation, establishing a FoxM1–PSMB4 transcriptional axis. ChIP/promoter binding assay, siRNA knockdown, overexpression, rescue experiments, TCGA correlation analysis Biochemical and biophysical research communications Medium 31699366
2020 Bassoon (Bsn), a presynaptic scaffolding protein, directly interacts with PSMB4 (β7 subunit of 20S core proteasome) via three independent interaction interfaces. Expression of PSMB4-interacting fragments of bassoon in cell lines or primary neurons attenuates all endopeptidase activities of cellular proteasome and induces accumulation of ubiquitinated and non-ubiquitinated proteasomal substrates, likely through steric interference with 20S core assembly. Bassoon knockout mice show increased proteasomal activity and depletion of synaptic proteasomal substrates, which is reversed by expressing PSMB4-interacting bassoon fragments. Co-immunoprecipitation, deletion mapping of interaction interfaces, proteasome activity assays, bassoon knockout mouse brains (synaptic fractionation), primary neuron expression experiments, substrate accumulation assays Cellular and molecular life sciences : CMLS High 32651614
2021 PSMB4 directly interacts with IκBα and promotes its proteasome-dependent degradation, thereby activating NF-κB signaling and inhibiting cardiomyocyte apoptosis during hypoxia/reoxygenation injury. PSMB4 silence increases IκBα levels and suppresses NF-κB activation, while PSMB4 overexpression has opposite effects. Co-immunoprecipitation (PSMB4–IκBα interaction), siRNA knockdown and overexpression in neonatal cardiomyocyte H/R model, NF-κB activation assays, western blotting for IκBα and apoptosis markers Journal of molecular histology Medium 33954843
2022 PSMB4 physically interacts with influenza A virus NS1 protein (interaction mapped by yeast two-hybrid and confirmed by Co-IP and confocal microscopy in mammalian cells). PSMB4 reduces NS1 protein levels, especially in the presence of proteasome inhibitor MG132, and suppresses NS1 functions including interferon inhibition and transient gene expression enhancement. PSMB4 knockdown enhances IAV replication while overexpression attenuates it. Yeast two-hybrid screening (binding domain mapping), co-immunoprecipitation, confocal microscopy, NS1 protein level assays with MG132, IAV replication assays with knockdown/overexpression Viruses Medium 36298834
2023 PSMB4 interacts with PRRSV Nsp1α protein; the PCPα domain (aa 66–166) of Nsp1α and the C-terminal domain (aa 250–264) of PSMB4 are critical for this interaction. PSMB4 mediates K63-linked ubiquitination of Nsp1α at K169, targeting Nsp1α for autolysosomal degradation by interacting with LC3 to enhance lysosomal pathway activation. PSMB4 also activates NF-κB signaling to induce type I interferon production by downregulating IκBα and p-IκBα expression, thereby restricting PRRSV replication. Yeast two-hybrid screening, co-immunoprecipitation, GST pulldown, laser confocal microscopy, ubiquitination assays (K63-linkage), autolysosome pathway assays, NF-κB signaling assays, PSMB4 overexpression and knockdown with PRRSV replication readouts Journal of virology High 36943051
2024 PSMB4 knockdown in bladder cancer cells reduces expression of phosphorylated FAK and myosin light chain (MLC), leading to decreased cancer cell migration. PSMB4 suppression also decreases VEGF-B levels, reducing angiogenic capacity and lowering VEGFR2 expression in HUVECs. In vivo metastatic models show PSMB4 knockdown reduces lung tumor volumes. siRNA knockdown, western blotting (pFAK, MLC, VEGF-B, VEGFR2), migration/angiogenesis assays, in vivo metastatic mouse model International journal of molecular sciences Medium 38791597
2025 S146 and M148 within the mature chain domain of PSMB4 are critical residues for binding and degrading PRRSV nsp1α. Truncated mutant assays and structure prediction showed these residues mediate the PSMB4–nsp1α interaction, and PSMB4 overexpression reduces nsp1α and viral N protein levels in a dose-dependent manner while knockdown promotes PRRSV replication. Yeast two-hybrid, co-immunoprecipitation, confocal microscopy, structure prediction, truncated/point mutant assays, PSMB4 overexpression/knockdown with viral protein level readouts Cellular and molecular life sciences : CMLS Medium 40192860

Source papers

Stage 0 corpus · 32 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2014 Comparative oncogenomics identifies PSMB4 and SHMT2 as potential cancer driver genes. Cancer research 137 24755469
2008 Comparison of toxicity associated with early morning versus late afternoon radiotherapy in patients with head-and-neck cancer: a prospective randomized trial of the National Cancer Institute of Canada Clinical Trials Group (HN3). International journal of radiation oncology, biology, physics 89 18805649
2020 Engineered Anti-GPC3 Immunotoxin, HN3-ABD-T20, Produces Regression in Mouse Liver Cancer Xenografts Through Prolonged Serum Retention. Hepatology (Baltimore, Md.) 54 31520528
2012 Combination treatment with photodynamic therapy and curcumin induces mitochondria-dependent apoptosis in AMC-HN3 cells. International journal of oncology 53 23064512
2005 Interaction of U-box E3 ligase SNEV with PSMB4, the beta7 subunit of the 20 S proteasome. The Biochemical journal 52 15660529
2017 Construction of an immunotoxin, HN3-mPE24, targeting glypican-3 for liver cancer therapy. Oncotarget 42 27419635
2015 PSMB4 promotes multiple myeloma cell growth by activating NF-κB-miR-21 signaling. Biochemical and biophysical research communications 29 25656574
2020 Bassoon inhibits proteasome activity via interaction with PSMB4. Cellular and molecular life sciences : CMLS 27 32651614
2018 Oxidative stress induced by carboplatin promotes apoptosis and inhibits migration of HN-3 cells. Oncology letters 27 30546448
2010 Comparative toxic effect of nitrogen mustards (HN-1, HN-2, and HN-3) and sulfur mustard on hematological and biochemical variables and their protection by DRDE-07 and its analogues. International journal of toxicology 22 20466873
2023 PSMB4 Degrades the Porcine Reproductive and Respiratory Syndrome Virus Nsp1α Protein via the Autolysosome Pathway and Induces the Production of Type I Interferon. Journal of virology 18 36943051
2021 Widely targeted metabolomics analysis of enriched secondary metabolites and determination of their corresponding antioxidant activities in Elaeagnus angustifolia var. orientalis (L.)Kuntze fruit juice enhanced by Bifidobacterium animalis subsp. Lactis HN-3 fermentation. Food chemistry 16 34815112
2021 PSMB4 inhibits cardiomyocyte apoptosis via activating NF-κB signaling pathway during myocardial ischemia/reperfusion injury. Journal of molecular histology 14 33954843
2017 The whole genomic analysis of orf virus strain HN3/12 isolated from Henan province, central China. BMC veterinary research 14 28821255
2006 A molecular link A molecular link between Hairless and Pros26.4, a member of the AAA-ATPase subunits of the proteasome 19S regulatory particle in Drosophila. Journal of cell science 14 16410550
2018 Mechanism of HN‑3 cell apoptosis induced by carboplatin: Combination of mitochondrial pathway associated with Ca2+ and the nucleus pathways. Molecular medicine reports 12 30272304
2016 Upregulation of PSMB4 is Associated with the Necroptosis after Spinal Cord Injury. Neurochemical research 12 27514644
2020 Engineering of HN3 increases the tumor targeting specificity of exosomes and upgrade the anti-tumor effect of sorafenib on HuH-7 cells. PeerJ 11 33062407
2018 Interference with PSMB4 Expression Exerts an Anti-Tumor Effect by Decreasing the Invasion and Proliferation of Human Glioblastoma Cells. Cellular physiology and biochemistry : international journal of experimental cellular physiology, biochemistry, and pharmacology 10 29414809
2015 Up-regulation of PSMB4 is associated with neuronal apoptosis after neuroinflammation induced by lipopolysaccharide. Journal of molecular histology 10 26282113
2019 A novel FoxM1-PSMB4 axis contributes to proliferation and progression of cervical cancer. Biochemical and biophysical research communications 8 31699366
2014 Predictive value of PAK6 and PSMB4 expression in patients with localized prostate cancer treated with dose-escalation radiation therapy and androgen deprivation therapy. Urologic oncology 8 24946957
2022 Cellular PSMB4 Protein Suppresses Influenza A Virus Replication through Targeting NS1 Protein. Viruses 7 36298834
2013 The apoptosis pathway of photodynamic therapy using 9-HpbD-a in AMC-HN3 human head and neck cancer cell line and in vivo. General physiology and biophysics 6 23846258
1977 Hematologic and immunologic studies in dogs given nitrogen mustard (hn3). Blut 6 890145
2025 Comprehensive reexamination of the acute toxicity of nitrogen mustards: HN-1, HN-2 and HN-3 as blister agents: application of multi in silico approach. Archives of toxicology 4 40560191
2022 Analysis of the complete genome sequence of a rhizosphere-derived Pseudomonas sp. HN3-2 leads to the characterization of a cyclic lipopeptide-type antibiotic bananamide C. 3 Biotech 4 35070625
2025 S146 and M148 within the mature chain domain of PSMB4 are crucial for degrading PRRSV nsp1α. Cellular and molecular life sciences : CMLS 3 40192860
2024 The Reduction of PSMB4 in T24 and J82 Bladder Cancer Cells Inhibits the Angiogenesis and Migration of Endothelial Cells. International journal of molecular sciences 3 38791597
2025 PSMB4: a potential biomarker and therapeutic target for depression, perspective from integration analysis of depression GWAS data and human plasma proteome. Translational psychiatry 2 39979251
2010 Thermal decomposition of HN(3). The journal of physical chemistry. A 1 19916540
2015 [Apoptosis and migration suppression of HN-3 human laryngeal squamous cancer cells induced by photo-activation of 9-hydroxypheophorbide-α]. Lin chuang er bi yan hou tou jing wai ke za zhi = Journal of clinical otorhinolaryngology head and neck surgery 0 26685405

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