Affinage

PSMA1

Proteasome subunit alpha type-1 · UniProt P25786

Length
263 aa
Mass
29.6 kDa
Annotated
2026-06-10
100 papers in source corpus 2 papers cited in narrative 2 extracted findings
Cross-family judge vs UniProt: Affinage preferred faithfulness: 3/3 claims corpus-supported (100%)

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

PSMA1 encodes an alpha-type core subunit of the 20S proteasome that participates in targeted degradation of ubiquitinated substrates (PMID:36527092). In myeloid malignancies, PSMA1 expression is regulated downstream of TRAF6, and its level sets proteasome activity and sensitivity to the proteasome inhibitor bortezomib: reducing PSMA1 resensitizes bortezomib-resistant MDS/AML cells to bortezomib-induced cytotoxicity (PMID:22685174). PSMA1 can also be recruited as a scaffold-binding partner by the lncRNA MDHDH, which directly bridges PSMA1 to MDH2 and promotes binding of ubiquitinated MDH2 to the proteasome to accelerate its degradation, thereby lowering mitochondrial membrane potential and shifting the NAD+/NADH ratio to impede glycolysis in glioma cells (PMID:36527092). Beyond these two contexts, no further mechanistic detail of PSMA1 has been characterized in the available corpus.

Mechanistic history

Synthesis pass · year-by-year structured walk · 2 steps
  1. 2012 Medium

    Established that PSMA1 is not merely a static proteasome subunit but a regulated node whose expression, controlled downstream of TRAF6, determines proteasome activity and drug sensitivity in myeloid cancer.

    Evidence RNAi knockdown of TRAF6 with gene-expression profiling and bortezomib cytotoxicity assays in MDS/AML cell lines

    PMID:22685174

    Open questions at the time
    • Mechanism linking TRAF6 to PSMA1 transcription/expression not defined
    • Effect of PSMA1 on assembled 20S/26S proteasome structure or catalytic rate not measured directly
    • Not validated in primary patient samples or in vivo
  2. 2022 Medium

    Showed that PSMA1 can be recruited by a lncRNA scaffold to direct a specific substrate to the proteasome, linking proteasomal degradation to mitochondrial/metabolic control.

    Evidence RNA pulldown, mass spectrometry, RIP, reciprocal co-IP, JC-1 membrane potential and energy assays, and xenografts in glioma cells

    PMID:36527092

    Open questions at the time
    • Direct RNA-binding interface on PSMA1 not mapped
    • Whether scaffold recruitment generalizes to other substrates is unknown
    • Structural basis of MDHDH–PSMA1 association not resolved

Open questions

Synthesis pass · forward-looking unresolved questions
  • How PSMA1 incorporation, abundance, or RNA-mediated recruitment is integrated into normal proteasome assembly and substrate selection remains unresolved.
  • No structural model of PSMA1 within the 20S core in the corpus
  • No catalytic or assembly mechanism characterized
  • Generality of PSMA1-mediated substrate targeting beyond MDH2 and bortezomib contexts untested

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Pathway
R-HSA-392499 Metabolism of proteins 2
Partners
Complex memberships
20S proteasome

Evidence

Reading pass · 2 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2012 TRAF6 knockdown in MDS/AML cells leads to downregulation of PSMA1 (proteasomal subunit α-1), and reduced PSMA1 expression resensitizes bortezomib-resistant cells to bortezomib-induced cytotoxicity, placing PSMA1 downstream of TRAF6 in controlling proteasome activity and bortezomib sensitivity. RNAi-mediated knockdown of TRAF6 in MDS/AML cell lines followed by gene-expression profiling and functional cytotoxicity assays Blood Medium 22685174
2022 The lncRNA MDHDH acts as a molecular scaffold that directly binds both MDH2 and PSMA1 (20S proteasomal core subunit alpha-type 1), promoting the binding of ubiquitinated MDH2 to the proteasome and accelerating its degradation, thereby reducing mitochondrial membrane potential and altering the NAD+/NADH ratio to impede glycolysis in glioma cells. RNA pulldown, mass spectrometry, RNA immunoprecipitation, co-immunoprecipitation, JC-1 mitochondrial membrane potential assay, cell energy-production assays, in vivo xenograft experiments Journal of experimental & clinical cancer research : CR Medium 36527092

Source papers

Stage 0 corpus · 100 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2020 Mediterranean diet intervention alters the gut microbiome in older people reducing frailty and improving health status: the NU-AGE 1-year dietary intervention across five European countries. Gut 709 32066625
1976 Chromatin nu bodies: isolation, subfractionation and physical characterization. Nucleic acids research 197 1005117
1995 Keratinocyte growth factor is an important endogenous mediator of hair follicle growth, development, and differentiation. Normalization of the nu/nu follicular differentiation defect and amelioration of chemotherapy-induced alopecia. The American journal of pathology 191 7604876
1996 The nu gene acts cell-autonomously and is required for differentiation of thymic epithelial progenitors. Proceedings of the National Academy of Sciences of the United States of America 176 8650163
1980 Bacterial translocation from the gastrointestinal tract of athymic (nu/nu) mice. Infection and immunity 147 6966611
1995 Persistence of replication-deficient adenovirus-mediated gene transfer in lungs of immune-deficient (nu/nu) mice. Human gene therapy 144 7612702
1983 The effects of the nude (nu/nu) mutation on bleomycin-induced pulmonary fibrosis. A biochemical evaluation. The American review of respiratory disease 143 6189434
1980 T cell factor (interleukin 2) allows in vivo induction of T helper cells against heterologous erythrocytes in athymic (nu/nu) mice. European journal of immunology 139 6968270
2011 Novel (64)Cu- and (68)Ga-labeled RGD conjugates show improved PET imaging of α(ν)β(3) integrin expression and facile radiosynthesis. Journal of nuclear medicine : official publication, Society of Nuclear Medicine 123 21764795
1987 T cell antigen receptor expression in athymic (nu/nu) mice. Evidence for an oligoclonal beta chain repertoire. The Journal of experimental medicine 108 2439633
2007 Assessment of the biological and pharmacological effects of the alpha nu beta3 and alpha nu beta5 integrin receptor antagonist, cilengitide (EMD 121974), in patients with advanced solid tumors. Annals of oncology : official journal of the European Society for Medical Oncology 107 17693653
1977 Conformational states of chromatin nu bodies induced by urea. Nucleic acids research 99 896477
2015 Inhibition of Neuroblastoma Tumor Growth by Ketogenic Diet and/or Calorie Restriction in a CD1-Nu Mouse Model. PloS one 97 26053068
1996 Inhibition of atherosclerosis in CD4 T-cell-ablated and nude (nu/nu) C57BL/6 hyperlipidemic mice. The American journal of pathology 97 8702005
2012 Cytotoxic effects of bortezomib in myelodysplastic syndrome/acute myeloid leukemia depend on autophagy-mediated lysosomal degradation of TRAF6 and repression of PSMA1. Blood 92 22685174
2017 Synchrotron-based ν-XRF mapping and μ-FTIR microscopy enable to look into the fate and effects of tattoo pigments in human skin. Scientific reports 88 28900193
1976 Studies on immune responses to parasite antigens in mice. I. Ascaris suum larvae numbers and antiphosphorylcholine responses in infected mice of various strains and in hypothymic nu/nu mice. International archives of allergy and applied immunology 85 1087923
2011 Unfolded protein response is required in nu/nu mice microvasculature for treating breast tumor with tunicamycin. The Journal of biological chemistry 84 21676868
2003 Protein kinase C nu/protein kinase D3 nuclear localization, catalytic activation, and intracellular redistribution in response to G protein-coupled receptor agonists. The Journal of biological chemistry 81 12676944
1988 Characteristics of three human gastric cancer cell lines, NU-GC-2, NU-GC-3 and NU-GC-4. The Japanese journal of surgery 80 3172586
1997 Salmonella typhimurium aroA, htrA, and aroD htrA mutants cause progressive infections in athymic (nu/nu) BALB/c mice. Infection and immunity 76 9119506
2006 Resveratrol is rapidly metabolized in athymic (nu/nu) mice and does not inhibit human melanoma xenograft tumor growth. The Journal of nutrition 75 16988123
2020 Associations between Pro- and Anti-Inflammatory Gastro-Intestinal Microbiota, Diet, and Cognitive Functioning in Dutch Healthy Older Adults: The NU-AGE Study. Nutrients 72 33198235
1979 A cell population in nu/nu spleen can prevent generation of cytotoxic lymphocytes by normal spleen cells against self antigens of the nu/nu spleen. Journal of immunology (Baltimore, Md. : 1950) 69 312845
1980 N:NIH(S)-nu/nu mice with combined immunodeficiency: a new model for human tumor heterotransplantation. Journal of the National Cancer Institute 58 6967528
2018 Novosphingobium aromaticivorans uses a Nu-class glutathione S-transferase as a glutathione lyase in breaking the β-aryl ether bond of lignin. The Journal of biological chemistry 54 29449375
1990 Characterization of V beta-bearing cells in athymic (nu/nu) mice suggests an extrathymic pathway for T cell differentiation. European journal of immunology 54 1971795
2010 Novel enzymatic function of DNA polymerase nu in translesion DNA synthesis past major groove DNA-peptide and DNA-DNA cross-links. Chemical research in toxicology 51 20102227
2005 Gonadotropin-induced adrenocortical neoplasia in NU/J nude mice. Endocrinology 49 15919738
2010 What's Nu(SAP) in mitosis and cancer? Cellular signalling 48 21111812
2001 Squalamine treatment of human tumors in nu/nu mice enhances platinum-based chemotherapies. Clinical cancer research : an official journal of the American Association for Cancer Research 48 11297269
1998 Characterization of the immunostimulatory properties of Leishmania infantum HSP70 by fusion to the Escherichia coli maltose-binding protein in normal and nu/nu BALB/c mice. Infection and immunity 46 9423878
1993 Quantitative comparison between the transplantability of human and murine tumors into the subcutaneous tissue of NCr/Sed-nu/nu nude and severe combined immunodeficient mice. Cancer research 46 8402692
2012 Calpain/SHP-1 interaction by honokiol dampening peritoneal dissemination of gastric cancer in nu/nu mice. PloS one 44 22937084
2010 DNA polymerases nu and theta are required for efficient immunoglobulin V gene diversification in chicken. The Journal of cell biology 43 20584917
1982 Effect of Nu/Nu gene on genetically determined resistance to murine cytomegalovirus. The Journal of general virology 41 6288849
2006 A unique error signature for human DNA polymerase nu. DNA repair 40 17118716
2006 Eliminating established tumor in nu/nu nude mice by a tumor necrosis factor-alpha-related apoptosis-inducing ligand-armed oncolytic adenovirus. Clinical cancer research : an official journal of the American Association for Cancer Research 39 16951242
1986 Lambda phage protein Nu 1 contains the conserved DNA binding fold of repressors. Journal of molecular biology 39 2948020
2017 Proteomic profiling of antibody-inducing immunogens in tumor tissue identifies PSMA1, LAP3, ANXA3, and maspin as colon cancer markers. Oncotarget 36 29423100
2016 Combination of metronomic cyclophosphamide and dietary intervention inhibits neuroblastoma growth in a CD1-nu mouse model. Oncotarget 36 26959744
1987 Coxsackievirus B 1-induced polymyositis. Lack of disease expression in nu/nu mice. The Journal of clinical investigation 36 3038960
2019 NU-6027 Inhibits Growth of Mycobacterium tuberculosis by Targeting Protein Kinase D and Protein Kinase G. Antimicrobial agents and chemotherapy 34 31285226
2010 Targeting of alpha(nu)beta(3)-integrins expressed on tumor tissue and neovasculature using fluorescent small molecules and nanoparticles. Nanomedicine (London, England) 34 20662643
2004 Resonance Raman studies of HOO-Co(III)bleomycin and Co(III)bleomycin: identification of two important vibrational modes, nu(Co-OOH) and nu(O-OH). Journal of the American Chemical Society 33 15038737
2020 Recruitment of ανβ3 integrin to α5β1 integrin-induced clusters enables focal adhesion maturation and cell spreading. Journal of cell science 32 31780581
1992 Mapping of the nu gene using congenic nude strains and in situ hybridization. The Journal of experimental medicine 32 1346798
1990 Antiproliferative and cytotoxic effects of single and combined treatment with tumor necrosis factor alpha and/or alpha interferon on a human renal cell carcinoma xenotransplanted into nu/nu mice: cell kinetic studies. Cancer research 32 2400997
2022 A novel lncRNA MDHDH suppresses glioblastoma multiforme by acting as a scaffold for MDH2 and PSMA1 to regulate NAD+ metabolism and autophagy. Journal of experimental & clinical cancer research : CR 29 36527092
2019 Treatment with DHA Modifies the Response of MDA-MB-231 Breast Cancer Cells and Tumors from nu/nu Mice to Doxorubicin through Apoptosis and Cell Cycle Arrest. The Journal of nutrition 29 30601995
2002 Vitamin K(2) selectively induced apoptosis in ovarian TYK-nu and pancreatic MIA PaCa-2 cells out of eight solid tumor cell lines through a mechanism different from geranylgeraniol. Journal of cancer research and clinical oncology 29 12618894
1994 Apolipoprotein E (ApoE), a novel heparin-binding protein inhibits the development of Kaposi's sarcoma-like lesions in BALB/c nu/nu mice. The Journal of experimental medicine 29 7525844
2006 Coxsackie adenovirus receptor and alpha nu beta3/alpha nu beta5 integrins in adenovirus gene transfer of rat cochlea. Gene therapy 28 16886000
2004 Regulation of chronic colitis in athymic nu/nu (nude) mice. International immunology 28 14688063
1980 Functional Thy-1+ cells in cultures of spleen cells from nu/nu mice. European journal of immunology 28 6967413
2000 In vitro adenoviral vector p53-mediated transduction and killing correlates with expression of coxsackie-adenovirus receptor and alpha(nu)beta5 integrin in SUDHL-1 cells derived from anaplastic large-cell lymphoma. Clinical cancer research : an official journal of the American Association for Cancer Research 27 10656449
1986 The C57B1/6 nu/nu, lpr/lpr mouse. III. Autoimmunity status. Thymus 27 3088780
2009 Retinoic acid-induced nNOS expression depends on a novel PI3K/Akt/DAX1 pathway in human TGW-nu-I neuroblastoma cells. American journal of physiology. Cell physiology 26 19726747
1984 Coxsackievirus B3 persistence and myocarditis in N:NIH(S) II nu/nu and +/nu mice. The Journal of general virology 26 6747601
2009 Cranberry phytochemical extract inhibits SGC-7901 cell growth and human tumor xenografts in Balb/c nu/nu mice. Journal of agricultural and food chemistry 23 19108687
1982 Development and continuous growth in culture of interleukin 2-producer lymphocytes from athymic nu/nu mice. European journal of immunology 23 6982822
2022 The 'New (Nu)-clear' evidence for the tumor-driving role of PI3K. Acta materia medica 22 37200937
2015 Peloruside A Inhibits Growth of Human Lung and Breast Tumor Xenografts in an Athymic nu/nu Mouse Model. Molecular cancer therapeutics 22 26056149
2008 Grape and wine polyphenols down-regulate the expression of signal transduction genes and inhibit the growth of estrogen receptor-negative MDA-MB231 tumors in nu/nu mouse xenografts. Nutrition research (New York, N.Y.) 22 19083478
1995 Effect of T-cell deficiency on the formation of periapical lesions in mice: histological comparison between periapical lesion formation in BALB/c and BALB/c nu/nu mice. Journal of endodontics 22 7673820
1986 Long-term serial transplantation of 30 different human renal cell carcinomas into NMRI (nu/nu) mice: flow cytometric, histologic, and growth studies. Journal of the National Cancer Institute 22 2418248
1980 Polyclonal B cell activation by cell wall preparations of gram-positive bacteria. In vitro responses of spleen cells obtained from Balb/c, nu/nu, nu/+, C3H/He, C3H/HeJ and hybrid (DBA/N x Balb/c)F1 mice. Microbiology and immunology 21 6968019
2018 One-Year Consumption of a Mediterranean-Like Dietary Pattern With Vitamin D3 Supplements Induced Small Scale but Extensive Changes of Immune Cell Phenotype, Co-receptor Expression and Innate Immune Responses in Healthy Elderly Subjects: Results From the United Kingdom Arm of the NU-AGE Trial. Frontiers in physiology 20 30093866
2000 The antithrombotic factor singlet oxygen/light (1O2/h nu). Clinical and applied thrombosis/hemostasis : official journal of the International Academy of Clinical and Applied Thrombosis/Hemostasis 20 10726045
1988 Quantitative transplantation assays of spontaneous tumors of the C3H mouse as allografts in athymic NCr/Sed-nu/nu nude mice and isografts in C3Hf/Sed mice. Cancer research 20 3293775
1981 Interleukin 2 is mitogenic for nu/nu and nu/+ murine spleen cells. Proceedings of the National Academy of Sciences of the United States of America 20 6787601
2011 Antimicrobial activity and mechanism of action of Nu-3, a protonated modified nucleotide. Annals of clinical microbiology and antimicrobials 19 21232163
2022 Premna microphylla Turcz pectin protected UVB-induced skin aging in BALB/c-nu mice via Nrf2 pathway. International journal of biological macromolecules 18 35718142
2015 Reproducible features of small RNAs in C. elegans reveal NU RNAs and provide insights into 22G RNAs and 26G RNAs. RNA (New York, N.Y.) 18 26647462
1999 Increased severity of Candida vaginitis in BALB/c nu/nu mice versus the parent strain is not abrogated by adoptive transfer of T cell enriched lymphocytes. Journal of reproductive immunology 18 10660259
2017 The ketogenic diet is not feasible as a therapy in a CD-1 nu/nu mouse model of renal cell carcinoma with features of Stauffer's syndrome. Oncotarget 17 28915665
2009 RET protein promotes non-adherent growth of NB-39-nu neuroblastoma cell line. Cancer science 17 19320641
2022 Targeting telomerase reverse transcriptase with the covalent inhibitor NU-1 confers immunogenic radiation sensitization. Cell chemical biology 16 36206753
2022 PSMA1-mediated ultrasmall gold nanoparticles facilitate tumor targeting and MR/CT/NIRF multimodal detection of early-stage prostate cancer. Nanomedicine : nanotechnology, biology, and medicine 16 36280043
2017 Analysis of DNA polymerase ν function in meiotic recombination, immunoglobulin class-switching, and DNA damage tolerance. PLoS genetics 16 28570559
1982 Differentiation and activation of nu/nu splenic T cell precursors by mature peripheral T cells in the absence of thymus. Journal of immunology (Baltimore, Md. : 1950) 16 6177757
1982 Immunoglobulin synthesis in nude (nu/nu), nu/+ and reconstituted nu/nu mice infected with a demyelinating strain of Semliki Forest virus. Clinical and experimental immunology 16 6280913
1977 DNA chain flexibility and the structure of chromatin nu-bodies. Nucleic acids research 16 928067
1984 Coxsackievirus B3 persistence and myocarditis in NFR nu/nu and +/nu mice. Medical microbiology and immunology 15 6088960
2020 Pleiotrophin selectively binds to vascular endothelial growth factor receptor 2 and inhibits or stimulates cell migration depending on ανβ3 integrin expression. Angiogenesis 14 32681389
2010 Effectiveness of combined modality radiotherapy of orthotopic human squamous cell carcinomas in Nu/Nu mice using cetuximab, tirapazamine and MnSOD-plasmid liposome gene therapy. In vivo (Athens, Greece) 14 20133969
2008 15-Hydroxyprostaglandin dehydrogenase suppresses K-RasV12-dependent tumor formation in Nu/Nu mice. Molecular carcinogenesis 14 18058808
1985 The C57BL/6 nu/nu lpr/lpr mouse. II. Pedigree and preliminary characteristics. Thymus 14 4049479
2022 Sortase A-mediated cyclization of novel polycyclic RGD peptides for ανβ3 integrin targeting. Bioorganic & medicinal chemistry letters 13 35839966
2011 Treatment effects of the multikinase inhibitor sorafenib on hepatoblastoma cell lines and xenografts in NMRI-Foxn1 nu mice. Liver international : official journal of the International Association for the Study of the Liver 13 22176637
1991 Rearrangement patterns of T-cell receptor genes in the spleen of athymic (nu/nu) young mice. Immunogenetics 13 1999354
1985 Characterization of a renal cell carcinoma cell line suitable as a target for immunological studies in vitro and in the nu/nu mouse. The Journal of urology 13 4057430
1984 Opposing effects of xid and nu mutations on proliferative and polyclonal antibody and autoantibody responses to peptidoglycan, LPS, protein A and PWM. Immunology 13 6436173
2016 Downregulation of tetrahydrobiopterin inhibits tumor angiogenesis in BALB/c-nu mice with hepatocellular carcinoma. Oncology reports 12 27279530
1991 Characterization of a CD4-positive T-cell line derived from an athymic (nu/nu) mouse. Cellular immunology 12 1707347
1985 The C57BL/6 nu/nu lpr/lpr mouse. I. Expression of the 'lpr phenotype' in the C57BL/6 genetic background. Thymus 12 3876624
2018 Targeted suicide gene transfections reveal promising results in nu/nu mice with aggressive neuroblastoma. Journal of controlled release : official journal of the Controlled Release Society 11 29481823
2015 Evaluation of self-emulsified DIM-14 in dogs for oral bioavailability and in Nu/nu mice bearing stem cell lung tumor models for anticancer activity. Journal of controlled release : official journal of the Controlled Release Society 11 26079185
1997 Analyses of extrathymic T cell differentiation in nu/nu mice by grafting embryonal organs. Immunobiology 11 9241527
1985 Use of novel chemical supplements in the establishment of three human malignant lymphoma cell lines (NU-DHL-1, NU-DUL-1, and NU-AMB-1) with chromosome 14 translocations. International journal of cancer 11 2581902

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