Affinage

PACSIN3

Protein kinase C and casein kinase substrate in neurons protein 3 · UniProt Q9UKS6

Length
424 aa
Mass
48.5 kDa
Annotated
2026-06-10
18 papers in source corpus 9 papers cited in narrative 9 extracted findings
Cross-family judge vs UniProt: Affinage preferred faithfulness: 5/5 claims corpus-supported (100%)

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

PACSIN3 is a membrane-active F-BAR/SH3 scaffold protein that couples its membrane-tubulating and phosphoinositide-binding activities to the regulation of plasma membrane channels, receptors, and trafficking compartments (PMID:19997509, PMID:23690576). Through its SH3 domain it engages proline-rich cytoplasmic regions of partner proteins: it binds the N-terminal proline-rich region of the TRPV4 channel as a class I polyproline II helix and rigidifies the adjacent PIP2 binding site, an interaction that, together with the F-BAR domain, restricts PIP2 access and inhibits TRPV4 activation by cell swelling and heat (PMID:23690576, PMID:30244966). By an analogous SH3–proline-rich contact it binds the ADAM12 cytoplasmic tail and up-regulates ADAM12-mediated proHB-EGF ectodomain shedding (PMID:12952982). PACSIN3 also directs membrane trafficking: it promotes GLUT1 plasma membrane localization to increase glucose uptake in adipocytes (PMID:17320047) and positions the mechanosensitive Piezo1 channel at the intercellular bridge to control Rab11-FIP3 endosome and ESCRT-III delivery during cytokinetic abscission (PMID:34714681). Its scaffolding role requires an intact membrane-inserting EFC/F-BAR prong and high-affinity phosphoinositide binding, which are needed for axial mesoderm cell polarization and notochord formation in zebrafish (PMID:19997509).

Mechanistic history

Synthesis pass · year-by-year structured walk · 8 steps
  1. 2003 High

    Established PACSIN3 as a cytoplasmic adaptor for the metalloprotease ADAM12 and a positive regulator of ectodomain shedding, defining its first molecular partner and functional output.

    Evidence Yeast two-hybrid, GST pull-down, reciprocal Co-IP, co-localization, and overexpression/siRNA shedding assays mapping binding to ADAM12 residues 829-840

    PMID:12952982

    Open questions at the time
    • Did not resolve which PACSIN3 domain mediates ADAM12 binding
    • Mechanism by which PACSIN3 enhances shedding (trafficking vs. activation) not defined
  2. 2007 Medium

    Extended PACSIN3 function to glucose transporter trafficking, showing it selectively routes GLUT1 to the plasma membrane.

    Evidence Overexpression in 3T3-L1 adipocytes with subcellular fractionation, photoaffinity labeling, and glucose uptake assays

    PMID:17320047

    Open questions at the time
    • Direct physical interaction with GLUT1 not demonstrated
    • Single lab, overexpression-based; loss-of-function effect untested
    • No GLUT4 effect, leaving the basis for cargo selectivity unexplained
  3. 2007 Low

    Identified PACSIN3 in a FasL interactome in Schwann cells, hinting at a broader role in surface receptor trafficking in the nervous system.

    Evidence Proteomics/co-immunoprecipitation screen

    PMID:17761170

    Open questions at the time
    • Single proteomics screen with no PACSIN3-specific functional follow-up
    • Direct binding and physiological relevance unconfirmed
  4. 2009 High

    Defined the structural requirements for PACSIN3's membrane-active scaffolding in vivo, linking EFC/F-BAR membrane insertion and phosphoinositide binding to morphogenetic cell migration.

    Evidence Morpholino knockdown in zebrafish with cross-species rescue by Drosophila Syndapin EFC mutants and biochemical phosphoinositide binding assays

    PMID:19997509

    Open questions at the time
    • Molecular cargo or partners driving notochord cell migration not identified
    • Endocytic step coupled to migration not directly visualized
  5. 2013 High

    Revealed PACSIN3 as a negative regulator of TRPV4, showing it inhibits mechanical and thermal channel activation in an F-BAR-dependent manner by limiting PIP2 access.

    Evidence Heterologous co-expression, FRET of TRPV4 tail proximity, F-BAR deletion constructs, and electrophysiology

    PMID:23690576

    Open questions at the time
    • How the F-BAR domain mechanically restricts PIP2 access was not structurally resolved
    • Physiological context of TRPV4 inhibition in tissue not addressed
  6. 2018 High

    Provided atomic-resolution mechanism for the PACSIN3–TRPV4 interaction and established a hierarchical SH3/PIP2 binding network at the TRPV4 N-terminus.

    Evidence NMR structure of PACSIN3 SH3–TRPV4 PRR complex with ITC/NMR affinity measurements and mutagenesis

    PMID:30244966

    Open questions at the time
    • Full-length channel/PACSIN3 architecture not determined
    • Functional consequence of the cis-proline conformational switch on gating not tested directly
  7. 2019 Low

    Implicated cytokine signaling in controlling PACSIN3 abundance, showing IL-6 represses PACSIN3 protein post-transcriptionally during myoblast differentiation.

    Evidence miRNA microarray, qRT-PCR, and Western blot in IL-6- or IGF-I-treated primary rat skeletal myoblasts

    PMID:31820147

    Open questions at the time
    • No direct demonstration that miR-154-3p/miR-338-3p repress PACSIN3 mRNA
    • Functional consequence of PACSIN3 loss in myogenesis not tested here
  8. 2021 Medium

    Placed PACSIN3 upstream of Piezo1-dependent endosome trafficking in cytokinesis, connecting it to the membrane scission machinery of abscission.

    Evidence Genetic knockdown with live-cell imaging of the intercellular bridge, immunolocalization of Piezo1/Rab11-FIP3/ALIX/ESCRT-III, and multinucleation readout

    PMID:34714681

    Open questions at the time
    • Direct PACSIN3–Piezo1 interaction not biochemically demonstrated
    • Single lab; mechanism of endosome mispositioning not resolved at molecular detail

Open questions

Synthesis pass · forward-looking unresolved questions
  • Whether the diverse PACSIN3 functions (channel regulation, cargo trafficking, caveolar biogenesis, cytokinesis) reflect one unified membrane-remodeling activity or distinct context-specific roles remains unresolved.
  • No unified structural/functional model linking F-BAR membrane tubulation to its various cargo outputs
  • Endogenous tissue-specific partner inventory incomplete
  • Direct disease-causing mutations not defined in primary data

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0060090 molecular adaptor activity 3 GO:0008289 lipid binding 2 GO:0098772 molecular function regulator activity 2
Localization
GO:0005886 plasma membrane 2 GO:0005768 endosome 1
Pathway
R-HSA-9609507 Protein localization 2 R-HSA-1266738 Developmental Biology 1 R-HSA-1640170 Cell Cycle 1

Evidence

Reading pass · 9 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2003 PACSIN3 binds the cytoplasmic domain of ADAM12/meltrin alpha via a proline-rich region (residues 829-840) of ADAM12, as demonstrated by yeast two-hybrid screening, GST pull-down, co-immunoprecipitation, and co-localization. PACSIN3 overexpression enhanced TPA-induced proHB-EGF shedding, and siRNA knockdown of PACSIN3 attenuated proHB-EGF shedding induced by TPA and angiotensin II, establishing PACSIN3 as an up-regulator of ADAM12-mediated ectodomain shedding. Yeast two-hybrid, GST pull-down, co-immunoprecipitation, co-localization, overexpression and siRNA knockdown with functional shedding assay The Journal of biological chemistry High 12952982
2007 PACSIN3 overexpression in 3T3-L1 adipocytes elevated glucose uptake by specifically increasing GLUT1 plasma membrane localization (shown by subcellular fractionation and photoaffinity labeling), without affecting GLUT4 distribution, establishing a role for PACSIN3 in GLUT1 trafficking. Overexpression in 3T3-L1 adipocytes, subcellular fractionation, photoaffinity labeling, glucose uptake assay Biochemical and biophysical research communications Medium 17320047
2007 PACSIN3 was identified as a FasL-interacting protein in Schwann cells via proteomics, placing it among endocytosis/trafficking regulators that control FasL surface expression in the nervous system. Proteomics/co-immunoprecipitation screen FEBS letters Low 17761170
2009 Zebrafish Pacsin3 (ortholog) is required for notochord formation: morpholino knockdown caused failure of axial mesodermal cell polarization, migration, and differentiation, resulting in stunted body axis. Rescue by Drosophila Syndapin required an intact membrane-inserting prong on the EFC domain and high-affinity phosphoinositide binding, defining structural requirements for its membrane-active scaffolding function in endocytosis-coupled cell migration. Morpholino knockdown in zebrafish, ectopic expression rescue, structural analysis of Drosophila Syndapin EFC domain, biochemical phosphoinositide binding assays PloS one High 19997509
2013 PACSIN3 binds the N-terminal tail of TRPV4 and abrogates TRPV4 activation by cell swelling and heat. PACSIN3 lacking the F-BAR domain interacted with TRPV4 without affecting channel activation or tail rearrangement, indicating the F-BAR domain is necessary for the inhibitory effect. PACSIN3 binding restricts PIP2 access to TRPV4, as evidenced by increased proximity of TRPV4 tails (FRET) upon PACSIN3 coexpression, similar to PIP2 depletion. Co-expression in heterologous systems, FRET analysis of TRPV4 tail proximity, domain-deletion constructs, electrophysiology Proceedings of the National Academy of Sciences of the United States of America High 23690576
2018 NMR structure of the PACSIN3 SH3 domain in complex with the TRPV4 N-terminal proline-rich region (PRR) showed the PRR binds as a class I polyproline II (PPII) helix with a conserved cis-proline breaking the PPII conformation. SH3 domain binding rigidifies both the PRR and the adjacent PIP2 binding site. Binding affinities of TRPV4 N-terminus for PACSIN1, 2, and 3 SH3 domains and PIP2 were determined, revealing a hierarchical interaction network where PACSIN/Syndapin binding influences the PIP2 binding site but not vice versa. NMR structure determination, binding affinity measurements (ITC/NMR), mutagenesis Structure (London, England : 1993) High 30244966
2021 PACSIN3 positions the mechanosensitive Piezo1 channel at the intercellular bridge (ICB) during cytokinesis. Genetic inhibition of Pacsin3 caused mislocation of Rab11-FIP3 endosomes, ALIX, and ESCRT-III components, leading to defective abscission and multinucleation, placing PACSIN3 upstream of Piezo1-dependent endosome trafficking in cytokinetic abscission. Genetic inhibition (knockdown), live-cell imaging of ICB, immunofluorescence localization of Piezo1/endosomal markers, functional abscission assay (multinucleation readout) Science advances Medium 34714681
2019 IL-6 downregulates Pacsin3 protein post-transcriptionally (not transcriptionally) in differentiating primary rat skeletal myoblasts; this effect was not seen with IGF-I, suggesting cytokine-specific post-transcriptional regulation involving miR-154-3p and miR-338-3p. miRNA microarray, qRT-PCR, Western blot in primary skeletal muscle cells treated with IL-6 or IGF-I Cell and tissue research Low 31820147
2022 PACSIN3 is required for caveolar biogenesis in muscle tissue, creating membrane reservoirs that control muscle function; its loss is linked to muscular disorders. Review summarizing in vivo genetic/loss-of-function studies in mouse muscle Acta physiologica (Oxford, England) Low 34990060

Source papers

Stage 0 corpus · 18 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2013 Phosphatidylinositol-4,5-biphosphate-dependent rearrangement of TRPV4 cytosolic tails enables channel activation by physiological stimuli. Proceedings of the National Academy of Sciences of the United States of America 123 23690576
2003 PACSIN3 binds ADAM12/meltrin alpha and up-regulates ectodomain shedding of heparin-binding epidermal growth factor-like growth factor. The Journal of biological chemistry 74 12952982
2009 Structural requirements for PACSIN/Syndapin operation during zebrafish embryonic notochord development. PloS one 39 19997509
2022 PACSIN proteins in vivo: Roles in development and physiology. Acta physiologica (Oxford, England) 34 34990060
2018 Structural Basis of TRPV4 N Terminus Interaction with Syndapin/PACSIN1-3 and PIP2. Structure (London, England : 1993) 34 30244966
2008 Identification and transcript analysis of a novel wallaby (Macropus eugenii) basal-like breast cancer cell line. Molecular cancer 29 18179684
2021 The mechanosensitive Piezo1 channel controls endosome trafficking for an efficient cytokinetic abscission. Science advances 25 34714681
2019 Homozygous TRPV4 mutation causes congenital distal spinal muscular atrophy and arthrogryposis. Neurology. Genetics 19 31041394
2007 A proteomic screen reveals novel Fas ligand interacting proteins within nervous system Schwann cells. FEBS letters 18 17761170
2020 Amyotrophy Induced by a High-Fat Diet Is Closely Related to Inflammation and Protein Degradation Determined by Quantitative Phosphoproteomic Analysis in Skeletal Muscle of C57BL/6 J Mice. The Journal of nutrition 17 31618431
2007 PACSIN3 overexpression increases adipocyte glucose transport through GLUT1. Biochemical and biophysical research communications 17 17320047
2020 Association of Cholinergic Muscarinic M4 Receptor Gene Polymorphism with Schizophrenia. The application of clinical genetics 12 32368127
2023 Hypomethylation in MTNR1B: a novel epigenetic marker for atherosclerosis profiling using stenosis radiophenotype and blood inflammatory cells. Clinical epigenetics 11 36658621
2019 Interleukin-6 affects pacsin3, ephrinA4 expression and cytoskeletal proteins in differentiating primary skeletal myoblasts through transcriptional and post-transcriptional mechanisms. Cell and tissue research 6 31820147
2024 Transcriptome analysis of mRNA and miRNA in the development of LeiZhou goat muscles. Scientific reports 5 38684760
2024 Identification and role of differentially expressed genes/proteins between pulmonary tuberculosis patients and controls across lung tissues and blood samples. Immunity, inflammation and disease 3 39023413
2021 Molecular Expression of Some Oncogenes and Predisposing Behaviors Contributing to the Aggressiveness of Prostate Cancer. Reports of biochemistry & molecular biology 3 34277869
2025 Identification of candidate cardiomyopathy modifier genes through genome sequencing and RNA profiling. Frontiers in cardiovascular medicine 2 40791945

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