| 2003 |
Lsm11 is a novel Sm-like protein that replaces SmD2 in the U7 snRNP Sm ring. Its long N-terminal domain mediates an important step in histone mRNA 3'-end cleavage, while its C-terminal Sm motifs (interrupted by an unusually long spacer) are sufficient for assembly with U7 snRNA. Assembly of the U7-specific Sm core depends on the noncanonical Sm-binding site of U7 snRNA and is facilitated by a specialized SMN complex containing Lsm10 and Lsm11 but lacking SmD1/D2. |
In vitro assembly assays, immunoprecipitation, GST pulldown, in vitro processing assays, domain deletion/truncation analysis |
Genes & development |
High |
12975319
|
| 2003 |
Drosophila Lsm11 (dLsm11) associates with dLsm10, SmB (but not SmD1/D2), and the Drosophila U7 snRNA, and indirectly with histone H3 pre-mRNA; dLsm10 and dLsm11 can assemble into U7 snRNPs in mammalian cells, demonstrating evolutionary conservation of the unique U7 snRNP composition. |
Immunoprecipitation in Drosophila S2 cells, cross-species complementation assay |
RNA (New York, N.Y.) |
Medium |
14624008
|
| 2005 |
Lsm11 undergoes two distinct interactions with ZFP100: one between the Lsm11 N-terminus and the zinc finger repeats of ZFP100, and a second between the N-terminus of ZFP100 and the Sm domain of Lsm11. The second interaction is sufficient for specific recognition of U7 snRNP by ZFP100 in cell extracts. Clustered point mutations in three conserved regions of the Lsm11 N-terminus impair histone RNA processing independently of ZFP100 binding, indicating additional roles (e.g., contacting the pre-mRNA or other factors). |
GST pulldown (in vitro and in cell extracts), scanning mutagenesis, in vitro processing assays |
Nucleic acids research |
Medium |
15824063
|
| 2005 |
Lsm10 and Lsm11 associate with the pICln subunit of the PRMT5 complex in vitro and in vivo without receiving symmetrical dimethylarginine (sDMA) modifications, implicating the PRMT5 complex in an early stage of U7 snRNP assembly independent of methylation. Binding of Lsm10 and Lsm11 to SMN is independent of methylation, and two separate binding sites exist in SMN: one recognizing Sm domains and one recognizing sDMA-modified RG-tails. |
Co-immunoprecipitation, GST pulldown, in vitro binding assays, methylation assays |
The Journal of biological chemistry |
Medium |
16087681
|
| 2006 |
ZFP100 zinc fingers 5–10 are required for binding to a 20-amino-acid region of Lsm11, and the domain sufficient for Cajal body localization and Lsm11 binding is also sufficient to stimulate histone pre-mRNA processing in vivo, linking the ZFP100–Lsm11 interaction to processing activity. |
Co-immunoprecipitation, domain truncation, in vivo reporter assay, photobleaching (FRAP) |
RNA (New York, N.Y.) |
Medium |
16714279
|
| 2007 |
Lsm11 localizes to the histone locus body (HLB) in Drosophila embryos; using anti-Lsm11 antibodies, the HLB is shown to form at nuclear cycle 11 coincident with zygotic histone transcription. Lsm11 foci are present even in histone locus deletion embryos, indicating HLB assembly is not strictly dependent on the histone locus itself. |
Immunofluorescence, confocal microscopy, genetic ablation of histone locus in embryos |
Molecular biology of the cell |
Medium |
17442888
|
| 2009 |
FLASH directly interacts with Lsm11 in vitro and in vivo (by yeast two-hybrid and immunoprecipitation), stimulates 3'-end processing of histone pre-mRNA in mammalian nuclear extracts, and is essential for U7-dependent processing in both vertebrates (human) and invertebrates (Drosophila), with FLASH depletion leading to polyadenylation of histone mRNAs. |
Yeast two-hybrid, GST pulldown (in vitro), co-immunoprecipitation (in vivo), in vitro processing assay (mammalian nuclear extracts), RNAi knockdown in Drosophila cells |
Molecular cell |
High |
19854135
|
| 2009 |
Three components of the U7-specific Sm ring—SmB, SmD3, and Lsm10—contact the region between the cleavage site and U7-binding site in histone pre-mRNA and likely function as a molecular ruler determining the cleavage site. Lsm11 and SmB were identified as stable components of the 3'-end processing complex assembled on histone pre-mRNA. |
Biotin-affinity pulldown of processing complex from nuclear extracts, UV cross-linking, mass spectrometry identification |
Molecular and cellular biology |
Medium |
19470752
|
| 2009 |
Mutations in Drosophila Lsm11 disrupt histone pre-mRNA processing (causing polyadenylated histone mRNA). Lsm10 protein fails to accumulate in Lsm11 mutants, suggesting Lsm10–Lsm11 dimers are precursors for U7 snRNP assembly. Lsm11 is required for U7 snRNA localization to the histone locus body, even though U7 snRNA can still assemble into a trimethylguanosine-capped particle in the absence of Lsm11. Lsm10 and Lsm11 mutants, unlike U7 snRNA null mutants, are lethal, indicating an essential Lsm10/Lsm11 function beyond histone pre-mRNA processing. |
Drosophila genetics (null mutants), RT-PCR, immunofluorescence, anti-TMG immunoprecipitation |
RNA (New York, N.Y.) |
High |
19620235
|
| 2010 |
CF Im68, a cleavage/polyadenylation factor, associates with highly purified U7 snRNP and this interaction depends on the N-terminus of Lsm11. Both depletion and overexpression of CF Im68 reduce histone RNA processing efficiency in vivo. The small CF Im subunit CF Im25 does not participate in histone RNA processing. |
Biochemical purification of U7 snRNP, immunoprecipitation, siRNA knockdown, in vitro processing assay |
Nucleic acids research |
Medium |
20634199
|
| 2011 |
Amino acids 105–154 of Drosophila FLASH bind to amino acids 1–78 of dLsm11 (N-terminal domain). A two-amino-acid mutation in dLsm11 that abolishes dFLASH binding, without affecting U7 snRNP localization to the HLB, fails to rescue lethality or processing defects caused by Lsm11 null mutation, demonstrating that the FLASH–Lsm11 protein–protein interaction is essential for histone pre-mRNA processing in vivo. |
Drosophila genetic rescue assay (null mutation complementation), yeast two-hybrid, co-immunoprecipitation, site-directed mutagenesis, immunofluorescence |
RNA (New York, N.Y.) |
High |
21525146
|
| 2011 |
Scanning mutagenesis identified critical residues in human Lsm11 that mediate its interaction with FLASH. Mutations in FLASH between residues 50–99 that do not affect Lsm11 binding convert FLASH into an inhibitory dominant negative, suggesting this FLASH region plus Lsm11 recruits an additional unknown processing factor. After endonucleolytic cleavage, the 5'→3' exonuclease activity of CPSF73 on the downstream cleavage product depends on Lsm11 but not on FLASH, indicating FLASH is dispensable for activating the exonuclease mode. |
Scanning mutagenesis, GST pulldown, in vitro processing assay with mammalian nuclear extracts, antibody inhibition |
Molecular and cellular biology |
Medium |
21245389
|
| 2012 |
The N-terminal regions of FLASH and Lsm11 form a platform that recruits a specific set of polyadenylation factors—symplekin, CstF64, and all CPSF subunits including the CPSF73 endonuclease—to the U7 snRNP. Point mutations in FLASH that abolish processing also inhibit this interaction. The same polyadenylation factors associate with endogenous U7 snRNP and are recruited to histone pre-mRNA in a U7-dependent manner. |
Co-immunoprecipitation (reciprocal), in vitro binding assays, point mutagenesis, mass spectrometry, histone pre-mRNA pull-down |
Molecular and cellular biology |
High |
23071092
|
| 2013 |
The Drosophila U7 snRNP contains FLASH and at least six polyadenylation factors (symplekin, CPSF73, CPSF100, CPSF160, WDR33, CstF64) as stable stoichiometric components, and this composite particle is recruited to histone pre-mRNA for processing. A motif in Drosophila FLASH is essential for recruiting the polyadenylation complex to U7 snRNP via Lsm11. |
Biochemical purification from Drosophila nuclear extracts, mass spectrometry, RNAi knockdown, in vitro processing assay |
RNA (New York, N.Y.) |
High |
24145821
|
| 2017 |
SLBP stabilizes U7 snRNP binding to histone pre-mRNA via two regions (helix B of its RNA-binding domain and C-terminal region), and this stabilization requires FLASH but not the downstream polyadenylation factors, assigning FLASH a second role: cooperating with SLBP to recruit U7 snRNP to histone pre-mRNA, distinct from its role in forming the polyadenylation factor docking platform with Lsm11. |
EMSA (gel shift), in vitro processing assay, domain truncation of SLBP/FLASH, UV cross-linking |
RNA (New York, N.Y.) |
Medium |
28289156
|
| 2017 |
Crystal structures of the FLASH N-terminal domain reveal it forms a coiled-coil dimer. Solution light scattering, analytical ultracentrifugation, and crosslinking show the FLASH NTD–Lsm11 NTD complex is a 2:1 heterotrimer (two FLASH NTD molecules per one Lsm11 NTD). |
X-ray crystallography, multi-angle light scattering, analytical ultracentrifugation, chemical crosslinking |
PloS one |
High |
29020104
|
| 2019 |
ALYREF physically interacts with Lsm11 (U7-snRNP-specific component) and promotes histone pre-mRNA 3'-end processing by facilitating U7-snRNP recruitment to histone pre-mRNA. ALYREF also enhances nuclear export of processed histone mRNAs as part of the TREX complex. |
Co-immunoprecipitation, RNA-immunoprecipitation, siRNA knockdown with processing and export assays |
The EMBO journal |
Medium |
30858280
|
| 2020 |
Biallelic mutations in LSM11 (encoding a component of the U7 snRNP histone pre-mRNA processing complex) cause misprocessing of canonical histone transcripts, disturb linker histone stoichiometry, alter nuclear cGAS distribution, and enhance cGAS-STING-mediated type I interferon signaling, establishing LSM11 as an Aicardi-Goutières syndrome gene. Chromatin lacking linker histone stimulates cGAMP production more efficiently in vitro, linking histone processing defects to innate immune activation. |
Patient-derived fibroblast studies, RT-PCR (histone mRNA processing), cGAS localization (immunofluorescence), cGAS in vitro cGAMP synthesis assay with reconstituted chromatin, interferon signaling assays |
Nature genetics |
High |
33230297
|
| 2022 |
SMN-mediated assembly of U7 snRNP (requiring Lsm10 and Lsm11) is necessary for neuromuscular junction (NMJ) integrity; co-expression of Lsm10 and Lsm11 selectively enhances U7 snRNP assembly, corrects histone mRNA processing defects, and rescues NMJ denervation, synaptic transmission defects, and skeletal muscle atrophy in SMA mice. U7 snRNP dysfunction also drives selective loss of the synaptic organizer Agrin at NMJs in vulnerable muscles. |
Mouse SMA model (in vivo), AAV-mediated co-expression of Lsm10/Lsm11, RT-PCR (histone mRNA processing), electrophysiology (NMJ transmission), immunofluorescence (NMJ morphology), Western blot (Agrin levels) |
Cell reports |
High |
36130491
|
| 2023 |
A heterodimer of Lsm10 and Lsm11 tightly interacts with the PRMT5/MEP50/pICln methylosome. Cryo-EM structural studies and biochemical assays show the interaction is mediated by PRMT5, which binds and methylates two arginine residues in the N-terminal region of Lsm11. PRMT5 also methylates an N-terminal arginine in SmE specifically in the U7 context (SmE is not methylated during spliceosomal Sm ring biogenesis). |
Cryo-EM structure determination, in vitro methylation assay, co-immunoprecipitation, biochemical binding assays |
RNA (New York, N.Y.) |
High |
37562960
|
| 2023 |
A SUMO-interacting motif (SIM) in the N-terminus of Lsm11 is required for efficient formation of U7 snRNP; in SUMO2 knockout cells, U7 snRNP levels are reduced and histone pre-mRNA 3'-end cleavage is defective with increased histone mRNA polyadenylation. Overexpression of Lsm11 and U7 snRNA rescues U7 snRNP levels and processing defects in SUMO2 KO cells. |
SUMO2 knockout cell line, rescue by Lsm11/U7 snRNA overexpression, RT-PCR (histone mRNA processing), immunofluorescence (HLB dynamics), SIM deletion mutagenesis |
Genes & development |
Medium |
40639911
|
| 2026 |
A conserved N-terminal helix of Lsm11 contacts the metallo-β-lactamase domain of the CPSF73 endonuclease within U7 snRNP; mutating or deleting this helix substantially reduces cleavage activity toward histone pre-mRNA. Cryo-EM of reconstituted wild-type U7 snRNP on a noncleavable pre-mRNA shows CPSF73 can adopt an open, active conformation independent of RNA binding at its active site. The CstF77 C-terminus contacts the CPSF100 subunit at a newly identified binding site that modestly contributes to cleavage activity. |
Cryo-EM structure determination, site-directed mutagenesis (helix deletion/point mutants), in vitro cleavage assay, reconstitution of U7 snRNP with pre-mRNA |
Nucleic acids research |
High |
41495886
|
| 2016 |
Hydrogen/deuterium exchange mass spectrometry shows the FLASH-interacting domain in Lsm11 is highly dynamic, while a downstream region required for recruiting the histone cleavage complex (HCC) folds into a stable structure. In vitro binding assays reveal Lsm11 also contacts the C-terminal SANT/Myb-like domain of FLASH (the same region that binds NPAT), and this binding partially relaxes (destabilizes) that domain, suggesting competition between Lsm11 and NPAT for FLASH that may regulate histone gene expression. |
Hydrogen/deuterium exchange mass spectrometry, in vitro GST pulldown binding assays |
Journal of molecular biology |
Medium |
26860583
|