| 2003 |
SLBP is phosphorylated on two threonines (T60 and T61 in a TTP sequence, residues 60-62) in late S phase, as determined by mass spectrometry of purified SLBP, triggering its degradation. Mutation of these residues or a cyclin binding site (aa 99-104) stabilizes SLBP in G2 and mitosis. Nuclear extracts from G1 and G2 cells are deficient in histone pre-mRNA processing, restored by recombinant SLBP, identifying SLBP as the only cell cycle-regulated factor required for histone pre-mRNA processing. |
Mass spectrometry of purified SLBP from late S-phase cells; site-directed mutagenesis; in vitro pre-mRNA processing assay with nuclear extracts |
Molecular and cellular biology |
High |
12588979
|
| 2009 |
SLBP knockdown by RNAi results in nuclear retention of properly processed histone mRNA, identifying a role for SLBP in histone mRNA nuclear export. SLBP-depleted cells also show accumulation in S phase and the retained histone mRNA is not rapidly degraded upon inhibition of DNA replication. |
RNA interference (RNAi) knockdown in U2OS cells; fluorescence in situ hybridization and cellular fractionation to track histone mRNA localization |
RNA (New York, N.Y.) |
Medium |
19155325
|
| 2016 |
The SCF E3 ubiquitin ligase subunit cyclin F binds SLBP via an atypical CY motif and mediates SLBP ubiquitination and degradation specifically in G2. Mutation of the CY motif prevents G2 degradation. Expression of stable SLBP increases loading of H2AFX mRNA onto polyribosomes, elevating H2A.X levels and sensitizing cells to apoptosis upon genotoxic stress in G2. |
Co-immunoprecipitation; site-directed mutagenesis of CY motif; polyribosome fractionation; functional apoptosis assays |
Molecular cell |
High |
27773672
|
| 2004 |
SLBP is a component of the histone mRNP on polyribosomes; histone mRNA from polyribosomes is immunoprecipitated with anti-SLBP antibody. When DNA replication is inhibited, histone mRNA is rapidly degraded but SLBP is relocalized to the nucleus while remaining active for RNA binding and histone pre-mRNA processing. |
Immunoprecipitation of polyribosome fractions with anti-SLBP; cycloheximide and replication inhibitor treatments with subcellular fractionation |
Nucleic acids research |
Medium |
15358832
|
| 2012 |
The prolyl isomerase Pin1 regulates SLBP polyubiquitination via the Ser20/Ser23 phosphodegron in the SLBP N-terminus, and Pin1 together with protein phosphatase 2A (PP2A) can dephosphorylate the phosphothreonine in the conserved TPNK sequence of the SLBP RNA binding domain in vitro, dissociating SLBP from histone mRNA. Pin1 inhibition or knockdown increases histone mRNA stability and stabilizes SLBP, causing nuclear accumulation. |
Chemical inhibition and siRNA knockdown of Pin1; in vitro dephosphorylation assay with PP2A; ubiquitination assays; subcellular fractionation |
Molecular and cellular biology |
Medium |
22907757
|
| 2013 |
Crystal structure (2.5 Å) of zebrafish SLIP1 bound to the translation-activation domain of SLBP determined. SLIP1 is a MIF4G-like homodimer that contacts SLBP's translation domain. A SLIP1-binding motif (SBM) was also identified in eIF3g and mRNA-export factor DBP5; pulldown assays confirmed SLIP1 binding to both; crystal structure of SLIP1 bound to DBP5 SBM resolved at 3.25 Å. |
X-ray crystallography (2.5 Å and 3.25 Å structures); pulldown assays |
Nucleic acids research |
High |
23804756
|
| 2017 |
FEM1A, FEM1B, and FEM1C (CUL2-RING E3 ubiquitin ligase substrate recognition subunits) interact with SLBP via distinct degrons in SLBP's N-terminus and mediate SLBP degradation. An SLBP mutant unable to interact with cyclin F and all three FEM1 proteins fails to oscillate during the cell cycle. FEM1-SLBP interaction is conserved in C. elegans and Drosophila; FEM1 depletion in C. elegans upregulates the SLBP ortholog CDL-1 in oocytes. |
Co-immunoprecipitation; site-directed mutagenesis of degrons; RNAi in C. elegans; co-immunoprecipitation of orthologs in C. elegans and Drosophila |
Cell cycle (Georgetown, Tex.) |
Medium |
28118078
|
| 2016 |
The CUL4 E3 ubiquitin ligase complex CRL4(WDR23) binds and ubiquitylates SLBP in vitro and in vivo. This ubiquitylation activates SLBP function in histone mRNA 3' end processing without affecting SLBP protein levels. Loss of CRL4(WDR23) activity causes depletion of histones, inhibited DNA replication, and growth slowdown. |
In vitro ubiquitylation assay; co-immunoprecipitation; RNAi knockdown with histone mRNA processing readouts; mass spectrometry |
Molecular cell |
High |
27203182
|
| 2012 |
The SLBP RNA binding domain contains two binding sites for the histone mRNA hairpin: a helix-turn-helix motif (Glu129-Val158) that recognizes unpaired uridines in the loop, and a second site (Arg180-Pro200) recognizing the second G-C base pair from the stem base. Phosphorylation of threonine in the TPNK sequence between the two sites increases SLBP affinity for histone mRNA by slowing the off-rate, while the adjacent proline acts as a hinge for orienting the second binding site. |
NMR spectroscopy; kinetic binding assays; site-directed mutagenesis |
Biochemistry |
High |
22439849
|
| 2004 |
Phosphorylation at four C-terminal serine residues (in DTAKDSNSDSDSD) of Drosophila SLBP is necessary for histone pre-mRNA processing. Both serine phosphorylation and RNA binding are required for proper folding of the SLBP RNA binding and processing domain (RPD); neither alone is sufficient. The electrostatic effect of phosphorylation can be partially mimicked by glutamic acid substitutions. |
31P NMR; circular dichroism; in vitro pre-mRNA processing assays; site-directed mutagenesis |
Biochemistry |
High |
15260483
|
| 2013 |
SLIP1 is a homodimer that does not bind RNA; phosphorylated SLBP has weak affinity for SLIP1 (Kd ~3 μM) but unphosphorylated SLBP forms a high-affinity 2:2 heterotetramer with SLIP1 (Kd < 0.9 nM) that cannot bind histone mRNA. Sequential binding—phosphorylated SLBP to histone mRNA followed by SLIP1—is required for an active ternary complex. Phosphorylation at Thr171 promotes dissociation of the inactive heterotetramer to a heterodimer. Mutation near the SLIP1 homodimer interface abolished SLBP interaction in vitro and reduced histone mRNA levels in vivo. |
Analytical ultracentrifugation; isothermal titration calorimetry; alanine scanning mutagenesis; RNA binding assays; in vivo histone mRNA quantification |
Biochemistry |
High |
23286197
|
| 2006 |
SLBP binding to histone pre-mRNA induces structural rearrangements in the 3'-UTR that open hairpin structures embedding the histone downstream element (HDE), making the HDE accessible for U7 snRNA anchoring. EMSA demonstrated that SLBP-induced opening of the HDE facilitates U7 snRNA binding to histone H4-12 pre-mRNA. |
RNA structure probing; electrophoretic mobility shift assay (EMSA) |
Nucleic acids research |
Medium |
16982637
|
| 2005 |
RNAi depletion of SLBP causes accumulation of cells in S phase and slows S-phase progression after release from a double-thymidine block. Expression of an RNAi-resistant SLBP restores proper S-phase progression, establishing that SLBP is required for efficient DNA replication, likely through its role in chromatin assembly. |
RNAi knockdown; rescue with RNAi-resistant SLBP; cell cycle analysis by flow cytometry |
Biochemical Society transactions |
Medium |
15916543
|
| 2022 |
53BP1 functions as a molecular scaffold for nucleoside diphosphate kinase-mediated phosphorylation of ACLY, enhancing ACLY activity. This promotes histone acetylation at the SLBP promoter, driving SLBP transcription. The 53BP1-ACLY-SLBP axis is required for quantitative and qualitative histone biogenesis and genomic integrity. |
Co-immunoprecipitation; chromatin immunoprecipitation; ACLY activity assay; SLBP promoter acetylation analysis; loss-of-function experiments |
Nucleic acids research |
Medium |
35037047
|
| 2023 |
Uridylation of the histone mRNA 3' stem-loop by TUT7 weakens SLBP binding affinity (demonstrated by fluorescence polarization and EMSA) while maintaining 3'hExo interactions. Molecular dynamics simulations show that combined uridylation and dephosphorylation of the TPNK motif in SLBP disrupts key RNA-protein interactions, suggesting that trimming by 3'hExo, uridylation, and SLBP dephosphorylation cooperate in the early stages of histone mRNA degradation. |
Fluorescence polarization; EMSA; 1-μs molecular dynamics simulations |
RNA biology |
Medium |
37516934
|
| 2021 |
A region of SLBP outside the mRNA-processing domain, overlapping a putative nuclear localization sequence, is required for histone mRNA deposition in the Drosophila oocyte and for histone gene transcription in stage 10B oocytes. SLBP mutants with a 10-amino-acid deletion or mutations in the NLS fail to deposit histone mRNA in the oocyte. |
Drosophila genetics; SLBP mutant analysis; in situ hybridization; immunofluorescence |
Journal of cell science |
Medium |
33408246
|
| 2025 |
SLBP directly interacts with the RNA helicase UPF1; the unstructured SLBP N-terminus wraps around the UPF1 helicase core at multiple contact sites. SLBP binding to UPF1 impedes UPF1 unwinding activity, but this interaction is critical for efficient histone mRNA decay in cells because UPF1 unwinding of the stem-loop facilitates degradation by 3'hExo. UPF2 binds 3'hExo and, upon activating UPF1, overrides the inhibitory effect of SLBP. |
In vitro binding assays; biochemical unwinding assays; cellular decay assays; structural/contact mapping by mutagenesis |
bioRxivpreprint |
Medium |
bio_10.1101_2025.02.23.639735
|
| 2025 |
SLBP interacts with FADS2 (identified by IP-MS) and promotes FADS2 expression. SLBP also transcriptionally upregulates and stabilizes SLC7A11, a ferroptosis suppressor, thereby inhibiting lipid peroxidation and ferroptotic cell death in lung adenocarcinoma cells. SLBP-mediated proliferation is functionally dependent on FADS2, as FADS2 inhibition abrogates SLBP-driven growth. |
Immunopurification–mass spectrometry (IP-MS); RNA-seq; western blotting; biochemical ferroptosis markers (GSH, MDA, Fe2+); FADS2 inhibition rescue experiments |
Experimental cell research |
Low |
41344497
|
| 2025 |
In Drosophila, maternal histone mRNAs are polyadenylated with a truncated 3' stem-loop through a noncanonical 3'-end processing mechanism that requires SLBP but not U7 snRNP. These polyadenylated maternal histone transcripts are further stabilized by cytoplasmic poly(A) elongation by Wisp (cytoplasmic poly(A) polymerase), which is required for their translation. |
Northern blotting; RNA-seq; genetics (SLBP and U7 snRNP mutants); in situ hybridization |
Nucleic acids research |
Medium |
40239992
|