Affinage

LIN7A

Protein lin-7 homolog A · UniProt O14910

Length
233 aa
Mass
26.0 kDa
Annotated
2026-04-28
12 papers in source corpus 6 papers cited in narrative 6 extracted findings

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

LIN7A (Veli-1/MALS-1) is a PDZ-domain scaffold protein that assembles multiprotein complexes at cell-cell contacts and synapses to maintain apico-basal polarity, support neuronal development, and restrain cellular invasion. It directly binds MAGUK family partners such as VAM-1/MPP3 and recruits transmembrane cargo including the α2/β1 nitric oxide-sensitive guanylyl cyclase to nectin-based cell-cell contacts via its PDZ domain (PMID:11311936, PMID:27793718). In the brain, LIN7A localizes to presynaptic fractions and is required for cortical neuronal migration and interhemispheric axon development, with its transcription regulated by Ca²⁺/calcineurin signaling (PMID:24658322, PMID:12393911). Loss of LIN7A promotes glioblastoma invasion by elevating MMP-2/MMP-9 activity and triggering nuclear β-catenin accumulation, while its overexpression in breast epithelial cells disrupts lumen formation, demonstrating that precise LIN7A dosage is critical for polarity and invasion control (PMID:40021783, PMID:26887652).

Mechanistic history

Synthesis pass · year-by-year structured walk · 5 steps
  1. 2001 Medium

    Identifying a direct MAGUK-family binding partner for LIN7A established that Veli-1 participates in scaffolded protein complexes in neuronal and epithelial cells, raising the question of what cargo these complexes recruit.

    Evidence GST pull-down and blot overlay assays demonstrating VAM-1–Veli-1 direct binding

    PMID:11311936

    Open questions at the time
    • No in vivo validation of the VAM-1–Veli-1 interaction
    • Functional consequence of complex formation not tested
    • Other MAGUK partners not compared
  2. 2002 Medium

    Demonstrating that LIN7A transcription is controlled by Ca²⁺ influx through the calcineurin pathway in neurons revealed how synaptic activity could dynamically regulate this scaffold, but the downstream transcription factor remained unidentified.

    Evidence Pharmacological activation/inhibition of Ca²⁺/calcineurin signaling in cultured cerebellar granule cells with transcriptional readouts

    PMID:12393911

    Open questions at the time
    • Transcription factor mediating calcineurin-dependent LIN7A expression not identified
    • In vivo relevance of activity-dependent regulation not tested
  3. 2014 Medium

    Loss-of-function experiments in vivo showed that LIN7A is required for cortical neuronal migration and axon pathfinding, moving it from a biochemical scaffold to a functionally required neurodevelopmental factor.

    Evidence RNAi knockdown via in utero electroporation in mouse cortex with immunohistochemical analysis of migration and axon tracts

    PMID:24658322

    Open questions at the time
    • Molecular mechanism linking LIN7A to migration machinery not defined
    • Rescue experiment not reported
    • Presynaptic localization shown biochemically but functional role at synapses not tested
  4. 2016 Medium

    Two studies expanded LIN7A's role beyond neurons: overexpression in breast epithelial cells disrupted lumen formation and drove invasion, establishing LIN7A as a dosage-sensitive polarity regulator, while PDZ-domain-mediated recruitment of NO-sensitive guanylyl cyclase to nectin-based cell-cell contacts via MPP3 provided a concrete cargo-delivery mechanism.

    Evidence 3D lumen-formation and invasion assays in breast epithelial cells; co-precipitation from brain synaptosomes and domain-mapping in HEK293 cells with truncation mutants

    PMID:26887652 PMID:27793718

    Open questions at the time
    • Whether lumen-formation defect operates through the same β-catenin or MMP pathways identified later is unknown
    • Structural basis of PDZ-dependent heterodimer selectivity not resolved
    • In vivo validation of guanylyl cyclase targeting not performed
  5. 2025 Medium

    Silencing LIN7A in glioblastoma cells identified a specific invasion-suppressive mechanism: LIN7A restrains MMP-2/9 activity and prevents nuclear β-catenin accumulation, linking its polarity-scaffold function to Wnt/β-catenin pathway control.

    Evidence Lentiviral knockdown in U87 cells with zymography, β-catenin immunofluorescence, invasion assays, and orthotopic xenograft

    PMID:40021783

    Open questions at the time
    • Direct physical link between LIN7A and β-catenin retention at junctions not shown
    • Whether MMP upregulation is a direct or indirect consequence of polarity loss is unresolved
    • Single cell line (U87) limits generalizability

Open questions

Synthesis pass · forward-looking unresolved questions
  • The direct molecular mechanism by which LIN7A restrains β-catenin nuclear translocation and MMP expression, and whether its neurodevelopmental and tumor-suppressive roles share a common polarity-dependent signaling axis, remain unresolved.
  • No structural model of LIN7A in complex with its partners
  • No genetic knockout mouse phenotype reported
  • Relationship between calcineurin-dependent transcriptional regulation and polarity/invasion functions not connected

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0060090 molecular adaptor activity 2
Localization
GO:0005886 plasma membrane 2 GO:0043226 organelle 1
Complex memberships
Crumbs polarity complex

Evidence

Reading pass · 6 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2001 VAM-1 (a MAGUK family member) contains a conserved domain that directly binds to Veli-1 (human LIN7A homologue), as demonstrated by GST pull-down experiments and blot overlay assays, suggesting VAM-1 promotes assembly of a Veli-1-containing protein complex in neuronal and epithelial cells. GST pull-down, blot overlay assay, heterologous transfection Biochimica et biophysica acta Medium 11311936
2002 MALS-1/Veli-1 (LIN7A) expression in cerebellar granule cells is regulated at the transcriptional level by Ca²⁺ entry through voltage- or ligand-operated Ca²⁺ channels acting via the calcineurin pathway, without requiring de novo protein synthesis or altered mRNA stability. Pharmacological activation/inhibition of Ca²⁺/calcineurin pathway in cultured cerebellar granule cells, transcriptional assays The Journal of biological chemistry Medium 12393911
2014 Lin-7A localizes to the presynaptic fraction in mouse brain (biochemical fractionation), and its RNAi-mediated suppression via in utero electroporation delays neuronal migration and disrupts interhemispheric axon development in the cerebral cortex, establishing a required role in cortical neurodevelopment. Biochemical fractionation, RNAi knockdown by in utero electroporation, immunohistochemistry PloS one Medium 24658322
2016 LIN7A overexpression in breast epithelial cells causes hyperproliferation, invasion, and complete absence of lumen formation, revealing a direct role in apico-basal polarity regulation as a Crumbs-complex component; gene expression profiling identified LIN7A as one of the most differentially overexpressed polarity genes in invasive micropapillary carcinomas. Gain-of-function overexpression assay, 3D lumen-formation assay, gene expression profiling Breast cancer research : BCR Medium 26887652
2016 Lin7a interacts with the α2/β1 form of nitric oxide-sensitive guanylyl cyclase in mouse brain synaptosomes (co-precipitation), and directs this heterodimer to calcium-insensitive cell-cell contacts in HEK293 cells via its PDZ domain; the PDZ-binding motif of the α2 subunit is accessible only in the heterodimer conformation, and Lin7a links the complex to nectin-based cell-cell contacts via MPP3. Co-precipitation from brain synaptosomes, overexpression in HEK293 cells, truncation/domain mutant analysis, immunofluorescence localization Biochemical pharmacology Medium 27793718
2025 Lentiviral silencing of LIN7A in U87 glioblastoma cells increases invasiveness, elevates MMP-2 and MMP-9 protease activity, and causes nuclear accumulation of β-catenin with increased transcriptional activity of β-catenin target genes, indicating LIN7A suppresses invasion partly by restraining the β-catenin pathway and maintaining cell polarity and intercellular junctions. Lentiviral knockdown, real-time cell invasion assay, spheroid invasion assay, zymography, Western blotting, immunofluorescence, orthotopic xenograft Scientific reports Medium 40021783

Source papers

Stage 0 corpus · 12 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2018 Long noncoding RNA CASC9 promotes LIN7A expression via miR-758-3p to facilitate the malignancy of ovarian cancer. Journal of cellular physiology 55 30537154
2018 microRNA-501-3p suppresses metastasis and progression of hepatocellular carcinoma through targeting LIN7A. Cell death & disease 42 29749382
2001 VAM-1: a new member of the MAGUK family binds to human Veli-1 through a conserved domain. Biochimica et biophysica acta 37 11311936
2014 LIN7A depletion disrupts cerebral cortex development, contributing to intellectual disability in 12q21-deletion syndrome. PloS one 23 24658322
2016 LIN7A is a major determinant of cell-polarity defects in breast carcinomas. Breast cancer research : BCR 22 26887652
2023 DNA methylation landscape reveals LIN7A as a decitabine-responsive marker in patients with t(8;21) acute myeloid leukemia. Clinical epigenetics 9 36864492
2016 Heterodimerization with the β1 subunit directs the α2 subunit of nitric oxide-sensitive guanylyl cyclase to calcium-insensitive cell-cell contacts in HEK293 cells: Interaction with Lin7a. Biochemical pharmacology 7 27793718
2024 Ortholog of autism candidate gene RBM27 regulates mitoribosomal assembly factor MALS-1 to protect against mitochondrial dysfunction and axon degeneration during neurodevelopment. PLoS biology 3 39480871
2024 Identification and validation of miR-29b-3p and LIN7A as important diagnostic markers for bone non-union by WGCNA. Journal of cellular and molecular medicine 2 38957040
2002 The expression of the PDZ protein MALS-1/velis is regulated by calcium and calcineurin in cerebellar granule cells. The Journal of biological chemistry 2 12393911
2025 Impact of LIN7A silencing on U87 cell invasion and its clinical significance in glioblastoma. Scientific reports 1 40021783
2024 Autism candidate gene rbm-26 (RBM26/27) regulates MALS-1 to protect against mitochondrial dysfunction and axon degeneration during neurodevelopment. bioRxiv : the preprint server for biology 0 37873356