Affinage

MPP3

MAGUK p55 subfamily member 3 · UniProt Q13368

Round 2 corrected
Length
585 aa
Mass
66.2 kDa
Annotated
2026-04-28
61 papers in source corpus 10 papers cited in narrative 9 extracted findings

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

MPP3 is a MAGUK-family scaffolding protein that organizes apical junctional complexes and multi-protein signaling assemblies at cell-cell contact sites in epithelia, retina, and developing cortex. At the retinal outer limiting membrane, MPP3 is recruited to the CRB1/MPP5 scaffold, maintains PALS1 (MPP5) levels in Müller glia, and its conditional loss causes late-onset retinal degeneration accelerated by light exposure (PMID:16519681, PMID:23893895). In cortical progenitors, MPP3 is required for adherens junction integrity, proper spindle orientation, and neuronal migration; conditional knockout produces ectopic mitoses and defective cortical stratification (PMID:23658188). MPP3 also bridges CADM1 to PI3K via a CADM1–MPP3–Dlg–p85 complex that activates Akt/Rac1 signaling and actin reorganization for epithelial cell spreading, and it modulates 5-HT2C receptor surface expression and desensitization through its PDZ domain (PMID:24503895, PMID:16914526).

Mechanistic history

Synthesis pass · year-by-year structured walk · 8 steps
  1. 2003 Medium

    Identifying MPP3 as a direct PDZ-dependent binding partner of CADM1 (TSLC1) at cell-cell contacts established that this MAGUK scaffold operates in an intercellular adhesion cascade in epithelial cells.

    Evidence Reciprocal Co-IP and GST pulldown with PDZ-motif deletion controls in lung epithelial cells

    PMID:13679854

    Open questions at the time
    • No in vivo validation of the CADM1–MPP3 interaction
    • Downstream signaling consequences of the interaction were unknown
  2. 2006 Medium

    Demonstrating that MPP3 localizes to the subapical region and photoreceptor synapse in retina, where it is recruited to the MPP5/CRB1 scaffold, placed MPP3 within the Crumbs polarity complex and suggested tissue-specific complex assembly with DLG1.

    Evidence Immunofluorescence in mouse and human retinae with endogenous Co-IP confirming MPP3–MPP5 and MPP3–DLG1 complexes

    PMID:16519681

    Open questions at the time
    • Loss-of-function consequences in the retina were not yet established
    • Stoichiometry and direct versus bridged interactions within the complex were unresolved
  3. 2006 Medium

    Showing that MPP3 opposes PSD-95 by preventing 5-HT2C receptor desensitization and increasing its surface expression revealed a PDZ-dependent role for MPP3 in GPCR trafficking and signaling in neurons.

    Evidence Ca²⁺ response assays in HEK293 cells and primary cortical neurons with Tat-peptide PDZ inhibitor controls

    PMID:16914526

    Open questions at the time
    • Mechanism by which MPP3 stabilizes receptor surface expression (endocytic versus recycling) was not delineated
    • In vivo neuronal phenotype of MPP3 loss on serotonergic signaling was not tested
  4. 2013 High

    Conditional knockout of Mpp3 in cortical progenitors proved that MPP3 is essential for maintaining the apical protein complex, adherens junctions, and correct spindle orientation, resolving whether it is required or redundant for cortical development.

    Evidence Cre-lox conditional KO in mouse cortex with immunofluorescence, BrdU/EdU cell cycle, and spindle orientation analysis

    PMID:23658188

    Open questions at the time
    • Which specific apical complex proteins are direct MPP3 interactors versus secondarily affected was not distinguished
    • Postnatal cortical circuit consequences were not assessed
  5. 2013 High

    Conditional deletion of Mpp3 in retina demonstrated that MPP3 maintains PALS1 levels at the subapical region and that its loss causes light-accelerated retinal degeneration, with genetic epistasis showing synergy with Pals1 haploinsufficiency.

    Evidence Conditional KO mouse with ERG, EM ultrastructure, immunofluorescence, and Mpp3/Pals1 double-knockout epistasis

    PMID:23893895

    Open questions at the time
    • Whether MPP3 stabilizes PALS1 by direct protein-protein interaction or indirectly through complex integrity was not resolved
    • Contribution of individual retinal cell types (photoreceptors vs. Müller glia) was not fully separated
  6. 2014 Medium

    Identification of the CADM1–MPP3–Dlg–p85 quaternary complex linked MPP3 scaffolding to PI3K/Akt/Rac1 activation and actin reorganization, providing a signaling mechanism downstream of trans-homophilic CADM1 adhesion.

    Evidence Co-IP of the multi-protein complex with functional inhibitor epistasis (LY294002, Akt and Rac1 inhibitors) in cell spreading assays

    PMID:24503895 PMID:25268382

    Open questions at the time
    • Direct binding interfaces between MPP3 and p85 or Dlg were not mapped
    • In vivo relevance of this signaling axis was not tested
  7. 2015 Medium

    Quantitative FRAP analysis showed that MPP3 exists in two kinetically distinct pools — a long-lived CADM1-bound complex (τ ~16 min) and a rapidly exchanging free pool (τ ~40–60 s) — establishing the dynamic behavior of MPP3 at adhesion sites.

    Evidence FRAP and FLIP live-cell imaging with exponential curve-fitting in cultured cells

    PMID:25780926

    Open questions at the time
    • Whether the two pools have distinct functional roles was not determined
    • Dynamics were not measured in polarized epithelial or retinal contexts
  8. 2025 Medium

    Demonstration that MPP3 expression in enteric neural crest cells is downregulated by Schwann cell-derived extracellular vesicles carrying MIR22HG, and that MPP3 knockdown blocks ENCC proliferation, migration, and distal colon colonization, extended MPP3's functional importance to enteric nervous system development.

    Evidence siRNA knockdown in ENCCs, extracellular vesicle treatment, m6A sequencing, and in vivo mouse colonization assay

    PMID:41286351

    Open questions at the time
    • Downstream effectors of MPP3 in ENCC migration were not identified
    • Whether known MPP3 complexes (CADM1–Dlg–PI3K) operate in this context is unknown
    • Single lab; awaits independent replication

Open questions

Synthesis pass · forward-looking unresolved questions
  • The structural basis of MPP3 scaffold assembly — how its SH3, GUK, and PDZ domains simultaneously engage distinct partners to form tissue-specific complexes — and the full range of physiological contexts requiring MPP3 remain to be determined.
  • No crystal structure or cryo-EM model of MPP3 in complex with any partner
  • No systematic interactome beyond candidate-based approaches
  • Relationship between retinal, cortical, and enteric functions has not been integrated mechanistically

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0060090 molecular adaptor activity 4
Localization
GO:0005886 plasma membrane 3
Pathway
R-HSA-1500931 Cell-Cell communication 4 R-HSA-1266738 Developmental Biology 3 GO:0098631 cell adhesion mediator activity 2 R-HSA-162582 Signal Transduction 2
Complex memberships
CADM1-MPP3-Dlg-p85 signaling complexCRB1/MPP5/MPP3 apical complex

Evidence

Reading pass · 9 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2003 MPP3 directly associates with TSLC1 (CADM1) through a PDZ-binding motif at the carboxyl terminus of TSLC1, and both proteins colocalize at cell-cell attachment sites at low and high cell density, placing MPP3 in the same cell-cell interaction cascade as TSLC1 in lung epithelial cells. Co-immunoprecipitation, GST pulldown, immunofluorescence colocalization Oncogene Medium 13679854
2006 MPP3 prevents desensitization of the serotonin 5-HT2C receptor-mediated Ca2+ response and increases cell surface expression of the receptor, opposite to the effect of PSD-95, in both heterologous cells and cortical neurons; this effect is mediated through PDZ-domain interaction with the C-terminus of the receptor. Ca2+ response assays in HEK293 cells and primary cortical neurons, cell surface expression assays, Tat-peptide inhibitor of PDZ interactions, loss-of-function Molecular biology of the cell Medium 16914526
2006 MPP3 localizes at the photoreceptor synapse and at the subapical region adjacent to adherens junctions at the outer limiting membrane (OLM) of the retina, where it colocalizes with MPP5 and CRB1; MPP3 is recruited to the MPP5 protein scaffold and forms separate complexes with DLG1 at the outer plexiform layer, together with MPP4. Immunofluorescence localization in mouse and human retinae, co-immunoprecipitation of endogenous complexes in vivo The FEBS journal Medium 16519681
2013 MPP3 is required for maintenance of the apical protein complex and adherens junctions in cortical progenitor cells; conditional knockout of Mpp3 in mouse cortex causes loss of apical complex proteins, disrupted adherens junctions, randomized spindle orientation, ectopically localized mitotic cells, delayed neuronal migration, and defective cortical stratification, without affecting cell division rate or cell cycle exit. Conditional knockout mouse (Cre-lox), immunofluorescence, confocal microscopy, BrdU/EdU cell cycle analysis, spindle orientation analysis The Journal of neuroscience High 23658188
2013 MPP3 is required for maintaining proper levels of PALS1 (MPP5) at the subapical region in Müller glia cells of the retina; conditional knockout of Mpp3 causes late-onset retinal degeneration with rosette formation, accelerated by light exposure, and significant loss of PALS1 at the subapical region; loss of MPP3 in Pals1 conditional knockdown retinas significantly accelerates onset of retinal degeneration. Conditional knockout mouse, electroretinography, electron microscopy ultrastructural localization, immunofluorescence, genetic epistasis (double knockout) Glia High 23893895
2014 MPP3, together with Dlg, forms a multi-protein complex connecting CADM1 to the p85 regulatory subunit of PI3K at the cell periphery; trans-homophilic interaction of CADM1 activates the PI3K pathway, leading to Akt and Rac1 activation and actin cytoskeleton reorganization required for cell spreading and epithelial structure formation. Cell-based spreading assay with chemical inhibitor screening (LY294002, Akt inhibitor, Rac1 inhibitor), co-immunoprecipitation of CADM1-MPP3-Dlg-p85 complex, confocal microscopy PloS one Medium 24503895 25268382
2015 MPP3 forms a stable cell adhesion complex with CADM1 and the actin-binding protein 4.1B at the plasma membrane; FRAP analysis reveals that MPP3 has two distinct fractions — one forming a long-lived complex with CADM1 (τ ~16 min) and a free pool (τ ~40-60 sec) — with CADM1 playing a central role in stabilizing the complex. FRAP (fluorescence recovery after photobleaching) with exponential curve-fitting, FLIP (fluorescence loss in photobleaching), live-cell imaging PloS one Medium 25780926
2014 MPP3 is significantly upregulated in high-metastatic-potential hepatocellular carcinoma (HCC) cell lines and clinical tissue; forced expression of MPP3 enhances HCC cell migration and invasion, while knockdown inhibits these effects; mechanistically, MPP3 promotes migration and invasion by upregulating matrix metalloproteinase 1 (MMP1). Forced expression and siRNA knockdown in HCC cell lines, migration/invasion assays (Transwell), qRT-PCR and western blot for MMP1 Cancer letters Medium 24513266
2025 MPP3 expression in enteric neural crest cells (ENCCs) is downregulated by MIR22HG (delivered via Schwann cell-derived extracellular vesicles) through an m6A-dependent ALKBH5/IGF2BP3 axis; knockdown of MPP3 inhibits ENCC proliferation and migration, and in vivo MPP3 reduction blocks ENCC colonization of the distal colon and disrupts enteric nervous system formation. Extracellular vesicle treatment of ENCCs, siRNA knockdown of MPP3, proliferation and migration assays, m6A sequencing, in vivo mouse colonization assay Communications biology Medium 41286351

Source papers

Stage 0 corpus · 61 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2013 Discovery and refinement of loci associated with lipid levels. Nature genetics 2409 24097068
2005 A human protein-protein interaction network: a resource for annotating the proteome. Cell 1704 16169070
2002 Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Proceedings of the National Academy of Sciences of the United States of America 1479 12477932
2015 The BioPlex Network: A Systematic Exploration of the Human Interactome. Cell 1118 26186194
2017 Architecture of the human interactome defines protein communities and disease networks. Nature 1085 28514442
2014 A proteome-scale map of the human interactome network. Cell 977 25416956
2020 A reference map of the human binary protein interactome. Nature 849 32296183
2021 Dual proteome-scale networks reveal cell-specific remodeling of the human interactome. Cell 705 33961781
2011 Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Briefings in bioinformatics 656 21873635
2002 Global profiling of the cell surface proteome of cancer cells uncovers an abundance of proteins with chaperone function. The Journal of biological chemistry 430 12493773
2005 Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Genome research 409 16344560
2001 Proteomic and functional evidence for a P2X7 receptor signalling complex. The EMBO journal 319 11707406
2011 Toward an understanding of the protein interaction network of the human liver. Molecular systems biology 207 21988832
2013 The protein interaction landscape of the human CMGC kinase group. Cell reports 174 23602568
2017 RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination. BMC biology 135 29117863
2004 Mutations in the DLG3 gene cause nonsyndromic X-linked mental retardation. American journal of human genetics 135 15185169
2011 Interactions of pathological hallmark proteins: tubulin polymerization promoting protein/p25, beta-amyloid, and alpha-synuclein. The Journal of biological chemistry 131 21832049
2004 An improved method for the synthesis of cellulose membrane-bound peptides with free C termini is useful for PDZ domain binding studies. Chemistry & biology 75 15123239
2003 Association of a lung tumor suppressor TSLC1 with MPP3, a human homologue of Drosophila tumor suppressor Dlg. Oncogene 69 13679854
2006 Opposite effects of PSD-95 and MPP3 PDZ proteins on serotonin 5-hydroxytryptamine2C receptor desensitization and membrane stability. Molecular biology of the cell 57 16914526
2011 Dlg3 trafficking and apical tight junction formation is regulated by nedd4 and nedd4-2 e3 ubiquitin ligases. Developmental cell 46 21920314
2009 A novel mutation in the DLG3 gene encoding the synapse-associated protein 102 (SAP102) causes non-syndromic mental retardation. Neurogenetics 43 19795139
2016 Gsk3β and Tomm20 are substrates of the SCFFbxo7/PARK15 ubiquitin ligase associated with Parkinson's disease. The Biochemical journal 41 27503909
2020 Silence of lncRNA MIAT-mediated inhibition of DLG3 promoter methylation suppresses breast cancer progression via the Hippo signaling pathway. Cellular signalling 35 32593652
2014 Trans-homophilic interaction of CADM1 activates PI3K by forming a complex with MAGuK-family proteins MPP3 and Dlg. PloS one 35 24503895
2014 Parallel mRNA and microRNA profiling of HEV71-infected human neuroblastoma cells reveal the up-regulation of miR-1246 in association with DLG3 repression. PloS one 32 24739954
2006 MPP3 is recruited to the MPP5 protein scaffold at the retinal outer limiting membrane. The FEBS journal 32 16519681
1996 Isolation of a gene (DLG3) encoding a second member of the discs-large family on chromosome 17q12-q21. Genomics 31 8824795
2022 A dual-activity topoisomerase complex regulates mRNA translation and turnover. Nucleic acids research 25 35748872
2018 Tetrahedral DNA Nanomaterial Regulates the Biological Behaviors of Adipose-Derived Stem Cells via DNA Methylation on Dlg3. ACS applied materials & interfaces 25 30168311
2017 A Human Tyrosine Phosphatase Interactome Mapped by Proteomic Profiling. Journal of proteome research 19 28675297
2023 Secretory MPP3 reinforce myeloid differentiation trajectory and amplify myeloid cell production. The Journal of experimental medicine 17 37115584
2020 LINC01315 Impairs microRNA-211-Dependent DLG3 Downregulation to Inhibit the Development of Oral Squamous Cell Carcinoma. Frontiers in oncology 17 33117688
2024 The prediction of pCR and chemosensitivity for breast cancer patients using DLG3, RADL and Pathomics signatures based on machine learning and deep learning. Translational oncology 16 38805774
2019 High expression of DLG3 is associated with decreased survival from breast cancer. Clinical and experimental pharmacology & physiology 16 31271664
2015 Dynamic regulation of a cell adhesion protein complex including CADM1 by combinatorial analysis of FRAP with exponential curve-fitting. PloS one 16 25780926
2014 Membrane palmitoylated protein 3 promotes hepatocellular carcinoma cell migration and invasion via up-regulating matrix metalloproteinase 1. Cancer letters 16 24513266
2014 Trans-homophilic interaction of CADM1 activates PI3K by forming a complex with MAGuK-family proteins MPP3 and Dlg. PloS one 15 25268382
2017 Ammonia Reduces Intracellular Asymmetric Dimethylarginine in Cultured Astrocytes Stimulating Its y⁺LAT2 Carrier-Mediated Loss. International journal of molecular sciences 14 29099056
2024 DLG3 variants caused X-linked epilepsy with/without neurodevelopmental disorders and the genotype-phenotype correlation. Frontiers in molecular neuroscience 13 38249294
2017 Skewed X-inactivation in a family with DLG3-associated X-linked intellectual disability. American journal of medical genetics. Part A 13 28777483
2013 MPP3 is required for maintenance of the apical junctional complex, neuronal migration, and stratification in the developing cortex. The Journal of neuroscience : the official journal of the Society for Neuroscience 13 23658188
2011 Fine mapping of Xq11.1-q21.33 and mutation screening of RPS6KA6, ZNF711, ACSL4, DLG3, and IL1RAPL2 for autism spectrum disorders (ASD). Autism research : official journal of the International Society for Autism Research 13 21384559
2013 MPP3 regulates levels of PALS1 and adhesion between photoreceptors and Müller cells. Glia 12 23893895
1998 DLG3, the gene encoding human neuroendocrine Dlg (NE-Dlg), is located within the 1.8-Mb dystonia-parkinsonism region at Xq13.1. Genomics 11 9598320
2016 A non-coding variant in the 5' UTR of DLG3 attenuates protein translation to cause non-syndromic intellectual disability. European journal of human genetics : EJHG 10 27222290
2019 A Novel DLG3 Mutation Expanding the Phenotype of X-Linked Intellectual Disability Caused by DLG3 Nonsense Variants. Molecular syndromology 9 32021600
1999 A recessive mutation leading to vertebral ankylosis in zebrafish is associated with amino acid alterations in the homologue of the human membrane-associated guanylate kinase DLG3. Mechanisms of development 9 10446262
2020 Triple diagnosis of Wiedemann-Steiner, Waardenburg and DLG3-related intellectual disability association found by WES: A case report. The journal of gene medicine 8 32246869
2021 Hypermethylation of DLG3 Promoter Upregulates RAC1 and Activates the PI3K/AKT Signaling Pathway to Promote Breast Cancer Progression. Evidence-based complementary and alternative medicine : eCAM 7 34765009
2025 EndoMAP.v1 charts the structural landscape of human early endosome complexes. Nature 6 40437099
2012 MPP3 inactivation by promoter CpG islands hypermethylation in colorectal carcinogenesis. Cancer biomarkers : section A of Disease markers 5 23011156
2024 Identification of a DLG3 stop mutation in the MRX20 family. European journal of human genetics : EJHG 3 38273165
2023 COP1 facilitates the proliferation, invasion, and migration of glioma cells by ubiquitination of DLG3 protein. Neurological research 2 37356109
2011 Polymorphisms in the DLG3 gene is not associated with non-syndromic mental retardation in the Chinese Han population of Qin-Ba mountain. Cellular and molecular neurobiology 2 21369957
2025 A New Family with X-Linked Intellectual Disability 90: A Case Report of a Novel DLG3 Variant and Literature Review. Molecular syndromology 1 40881055
2025 Further phenotypical delineation of DLG3-related neurodevelopmental disorders. European journal of human genetics : EJHG 1 40983642
2024 Multifaceted roles of DLG3/SAP102 in neurophysiology, neurological disorders and tumorigenesis. Neuroscience 1 39638232
2025 Extracellular vesicle-mediated transfer of MIR22HG inhibits the colonization of enteric neural crest cells in the colon by decreasing MPP3 expression. Communications biology 0 41286351
2024 Retraction: LINC01315 impairs microRNA-211-dependent DLG3 downregulation to inhibit the development of oral squamous cell carcinoma. Frontiers in oncology 0 39026977
2007 [The growth inhibition effects of TSLC1 gene on human hepatocyte carcinoma cell line HepG2]. Zhonghua gan zang bing za zhi = Zhonghua ganzangbing zazhi = Chinese journal of hepatology 0 17669239