| 2000 |
GPN1 (XAB1) is a cytoplasmic GTPase that binds to the N-terminal region of XPA (nucleotide excision repair protein); purified recombinant XAB1 has intrinsic GTPase activity; deletion of XPA residues 30-34 (required for XPA nuclear localization) abolishes the XAB1-XPA interaction |
Yeast two-hybrid screening, purified recombinant protein GTPase assay, deletion mutagenesis |
Nucleic acids research |
Medium |
11058119
|
| 2003 |
GPN1 (MBDin) localizes mainly in the cytoplasm but shuttles to the nucleus; its nuclear export is mediated by an NES; GPN1 interacts with MBD2 (requiring the C-terminal 46-aa region of MBD2 and an intact GTP-binding site of GPN1); GPN1 overexpression relieves MBD2-mediated transcriptional repression from methylated promoters without altering DNA methylation |
Yeast two-hybrid, co-immunoprecipitation, fluorescence imaging with leptomycin B treatment, transcriptional reporter assays, bisulfite analysis |
Molecular and cellular biology |
Medium |
12588985
|
| 2007 |
Crystal structure of archaeal GPN-loop GTPase PAB0955 (Pyrococcus abyssi homolog of human XAB1/GPN1) reveals a homodimeric architecture; the conserved GPN loop is part of the catalytic site of the opposing monomer and stabilizes the phosphate ion, defining a novel self-activating GTPase mechanism in the SIMIBI class |
X-ray crystallography |
EMBO reports |
High |
17468740
|
| 2010 |
GPN1 (RPAP4) shuttles between nucleus and cytoplasm and is required for nuclear import of RNAPII largest subunits RPB1 and RPB2; the GPN loop motif and GTP-binding motifs are essential for nuclear localization of RPB1; microtubule assembly is also required for this nuclear import process |
Affinity purification-mass spectrometry, siRNA knockdown, fluorescence microscopy, dominant-negative GTP-binding mutants |
Molecular & cellular proteomics |
High |
20855544
|
| 2011 |
Human GPN1 and GPN3 stably associate with RNAPII from cytoplasmic and nuclear fractions; GPN1 and GPN3 directly interact with RNAPII subunit RPB7/RPB4 and the CTD of RNAPII; siRNA depletion of GPN1 or GPN3 causes decreased nuclear RNAPII and cytoplasmic accumulation; a dominant-negative GPN1 with mutations in the GTP-binding pocket retains RNAPII in a cytoplasmic complex, demonstrating GTP-dependent nuclear import |
Co-immunoprecipitation from cytoplasmic/nuclear fractions, siRNA knockdown, stable cell lines expressing dominant-negative mutants, fluorescence microscopy |
Molecular and cellular biology |
High |
21768307
|
| 2011 |
Yeast Npa3 (GPN1 ortholog) is required for nuclear localization of RNAPII in vivo; Npa3-RNAPII binding is significantly increased by GTP or GTPγS; the GTP-binding mutant that cannot hydrolyze GTP binds RNAPII constitutively even without added GTP, while the mutant that cannot bind GTP fails to bind RNAPII; Npa3 does not interact detectably with importin α/β pathway components, indicating an unconventional nuclear import pathway |
Degron-mediated depletion, chromatin immunoprecipitation, in vitro GTP-binding assays, site-directed mutagenesis, co-immunoprecipitation |
The Journal of biological chemistry |
High |
21844196
|
| 2012 |
A functional nuclear export sequence (NES) in human GPN1 spanning residues 292-304 (LERLRKDMGSVAL) is recognized by Crm1 and mediates cytoplasmic retention; V302A/L304A double mutation causes nuclear accumulation; this NES is sufficient to drive nuclear export of EYFP fusion protein |
Site-directed mutagenesis, leptomycin B treatment, fluorescence microscopy, molecular modeling |
Biochimica et biophysica acta |
Medium |
22796641
|
| 2012 |
In S. cerevisiae, GPN1 (Npa3) functions upstream of Iwr1 in RNAPII biogenesis; GPN2 and GPN3 are also required for nuclear localization of both RNAPII and RNAPIII but not RNAPI; the nuclear import defect of iwr1Δ (but not gpn2/gpn3 mutants) is partially suppressed by an NLS fused to Rpb3, placing GPN proteins upstream of Iwr1 |
Temperature-sensitive alleles, genetic epistasis, NLS-fusion suppression, fluorescence microscopy of nuclear localization |
Genetics |
High |
23267056
|
| 2013 |
GPN1 (RPAP4) silencing causes retention of RPAP2 in the nucleus; RPAP4/GPN1 binds to RPAP2 through RPAP2's C-terminal domain (amino acids 156-612), and this interaction is required for cytoplasmic export of RPAP2; GPN1 thus controls RPAP2 nucleocytoplasmic shuttling as part of RNAPII biogenesis |
siRNA silencing, domain-mapping co-immunoprecipitation, fluorescence microscopy with leptomycin B |
Nucleic acids research |
Medium |
23723243
|
| 2013 |
XAB1 (GPN1) siRNA knockdown has no detectable effect on nuclear import of XPA in response to UV damage; importin-α4 (UV-dependent) and importin-α7 mediate XPA nuclear import instead, contradicting the originally proposed role of XAB1 in XPA import |
siRNA knockdown, nuclear fractionation, co-immunoprecipitation |
PloS one |
Medium |
23861882
|
| 2014 |
Human GPN1 and GPN3 associate tightly as a complex (essentially all endogenous GPN1 and GPN3 co-immunoprecipitate); GPN1 retains GPN3 in the cytoplasm when coexpressed; the GPN1-GPN3 interaction is essential for maintaining steady-state protein levels of both GTPases |
Co-immunoprecipitation, fluorescence microscopy, leptomycin B treatment, expression level analysis |
FEBS letters |
Medium |
25241168
|
| 2015 |
Crystal structure of S. cerevisiae Npa3 (GPN1 ortholog) trapped in GDP-bound closed and GTP-analog-bound open conformations; the open conformation exposes a conserved hydrophobic pocket distant from the active site; Npa3 has chaperone activity and interacts with hydrophobic peptides from RNAPII subunit interfaces; GTPase activity is allosterically stimulated by hydrophobic peptide binding, suggesting a chaperone-GTPase coupling mechanism for RNAPII assembly |
X-ray crystallography, in vitro chaperone assays, peptide-binding assays, GTPase activity measurements |
Molecular and cellular biology |
High |
26711263
|
| 2016 |
The C-terminal tail of yeast Npa3/GPN1 (absent in archaeal GPN) is dispensable for RNAPII nuclear targeting and transcriptional activity but is required for microtubule stability, mitotic progression, and vacuole integrity; genetic interaction with BIK1 (microtubule plus-end tracking protein) places GPN1 C-terminal function in microtubule dynamics independent of RNAPII |
C-terminal truncation mutants, benomyl sensitivity assays, fluorescence microscopy, genetic interaction analysis |
Biochimica et biophysica acta. Molecular cell research |
Medium |
27965115
|
| 2017 |
Human GPN1 forms a homodimer stabilized by its C-terminal tail; purified recombinant GPN1 binds GDP and non-hydrolyzable GTP analog GMPPCP and hydrolyzes GTP; C-terminal deletion mutant (GPN1ΔC) still dimerizes via the GTPase domain but the dimer spontaneously dissociates into monomers, showing the C-terminal tail stabilizes the dimer |
Recombinant protein purification, size-exclusion chromatography, dynamic light scattering, native PAGE, circular dichroism, in vitro GTPase activity assay |
Protein expression and purification |
High |
28153773
|
| 2017 |
GPN1 inhibits polyubiquitination of GPN3 on K216 in a dose-dependent manner; GPN3 is polyubiquitinated on K216 (not K189) and degraded by the proteasome specifically in the cell nucleus; this identifies GPN1 as a regulator of GPN3 stability through inhibition of nuclear ubiquitination |
Proteasome inhibitor (MG132) treatment, site-directed mutagenesis (K216R), co-immunoprecipitation, pulse-chase half-life assay |
FEBS letters |
Medium |
29029378
|
| 2019 |
Human GPN1 and GPN3 form a heterodimer through a large interface comprising internal α-helix 7, insertion 2, and the GPN-loop from each protein; FRET experiments confirm very close proximity in cytoplasm of live cells; W132D and M227D mutations in GPN1 disrupt GPN1-GPN3 interaction by FRET and also abolish the dominant-negative effect on RNAPII nuclear targeting, demonstrating that intact GPN1-GPN3 interaction is required for their cellular function |
FRET microscopy, molecular modeling, site-directed mutagenesis, RNAPII localization assay |
The FEBS journal |
Medium |
31298811
|
| 2019 |
Plant RPAP1 ortholog IYO interacts with GPN GTPases including GPN1; this interaction requires an intact G1 motif (GTP-binding) in GPN1, indicating IYO binds the nucleotide-bound form of GPN1; IYO NLS deletion does not prevent GPN1 binding but blocks GPN1 nuclear import, suggesting IYO and GPN1 are co-transported as a complex using IYO's NLS |
Transient and stable plant expression assays, co-immunoprecipitation, subcellular localization microscopy, deletion and point mutagenesis |
Frontiers in plant science |
Low |
31552063
|
| 2020 |
Yeast Npa3 (GPN1 ortholog) interacts with Gpn3 and assembly factor Rba50 (human RPAP1 analog); Rpb2 (second largest RNAPII subunit) interacts with both Npa3 and Rba50, placing them in Rpb2 subcomplex assembly; human GPN1 similarly interacts with GPN3 and RPAP1; mutual protein-level dependency exists between Npa3 and Gpn3 |
Multicopy suppressor genetic screen, co-immunoprecipitation, auxin-inducible degron (AID) protein degradation, cross-species validation |
FASEB journal |
Medium |
32985767
|
| 2021 |
GPN1 and GPN3 are upregulated by MYC and direct RNA Polymerase I (Pol I) to ribosomal DNA; constitutively GTP-bound GPN1/3 mutants rescue Pol I ribosomal DNA localization after GTP depletion by IMPDH inhibition, demonstrating that GTP-bound GPN1/3 are required for Pol I localization to rDNA |
MYC overexpression, IMPDH inhibitor treatment, constitutively active GTP-bound mutant rescue experiments, ChIP or localization assays for Pol I at rDNA |
The Journal of clinical investigation |
Medium |
33079728
|
| 2022 |
Npa3/GPN1 and Gpn3 directly participate in assembly of the two largest RNAPII subunits (Rpb1 and Rpb2) in the cytoplasm; Gpn3 deficiency disrupts RNAPII assembly and causes cytoplasmic foci of RNAPII subunits; recovery of the defective assembly factor reverses foci formation, establishing a reversible 'RNAPII assembly stress response' |
Temperature-sensitive mutants, auxin-inducible degron, fluorescence microscopy of cytoplasmic foci, RNAPII assembly assays |
International journal of biological macromolecules |
Medium |
35314265
|
| 2025 |
In Toxoplasma gondii, GPN1 is substantially O-fucosylated; deletion of the SPY O-fucosyltransferase causes a modest 24% reduction in GPN1 protein level but does not affect GPN1's cytoplasmic localization or its association with RNAPII subunits in proteomic interactome analysis |
Endogenous epitope tagging, quantitative proteomics (interactome), super-resolution immunofluorescence microscopy, SPY knockout |
Glycobiology |
Medium |
40888172
|
| 2025 |
The C-terminal disordered domain (IDR) of Npa3/GPN1 is phosphorylated at Ser304/Ser308/Ser313; non-phosphorylatable alanine substitutions at these residues in a bud27Δ background markedly increase sensitivity to translation inhibitors, demonstrating that CTD phosphorylation regulates Npa3 function in ribosome biogenesis context |
Site-directed mutagenesis (Ser→Ala), growth sensitivity assays, disorder prediction, yeast genetic interaction (bud27Δ background) |
The FEBS journal |
Medium |
40788873
|