Affinage

FLII

Protein flightless-1 homolog · UniProt Q13045

Length
1269 aa
Mass
144.8 kDa
Annotated
2026-06-09
100 papers in source corpus 5 papers cited in narrative 5 extracted findings
Cross-family judge vs UniProt: Affinage preferred faithfulness: 5/5 claims corpus-supported (100%)

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

FLII (Flightless I) is a multidomain actin-remodeling protein and transcriptional coregulator that couples cytoskeletal dynamics to signaling at the actin cytoskeleton, the nucleus, and the plasma membrane (PMID:9177775, PMID:10092519). Its bipartite architecture combines an N-terminal leucine-rich repeat (LRR) domain with a C-terminal gelsolin-like actin-binding domain (PMID:9177775); the gelsolin-like domain binds G-actin and F-actin and severs filaments in a Ca2+-independent manner, while the LRR domain directly binds activated Ras with high affinity and suppresses activated-RAS phenotypes (PMID:10092519). In the nucleus, FLII acts as a transcriptional coregulator that inhibits beta-catenin/LEF1-dependent transcription, disrupting the synergy between its activating partner FLAP1, p300, and beta-catenin, thereby negatively regulating Wnt/beta-catenin signaling (PMID:16990252). At the cell periphery, FLII interacts with activated Rac1 and drives pro-migratory cytoskeletal remodeling downstream of the GEF P-Rex1 in a RhoA/ROCK-independent fashion (PMID:26887924). FLII also modulates skin and dermal integrity through interplay with TGF-beta1–Smad signaling, where its expression level controls blistering severity, integrin and collagen VII production, and fibroblast collagen gel contraction (PMID:21984127).

Mechanistic history

Synthesis pass · year-by-year structured walk · 5 steps
  1. 1997 Medium

    Establishing the human gene's domain architecture defined FLII as a candidate dual-function protein bridging signaling and the cytoskeleton, before any biochemical activity was known.

    Evidence cDNA cloning, sequencing, and Northern blot expression analysis identifying an LRR domain, a gelsolin-like domain, and muscle-enriched expression

    PMID:9177775

    Open questions at the time
    • Domain activities inferred from sequence homology, not biochemically reconstituted
    • Functional consequence of muscle-enriched expression not tested
  2. 1999 High

    Direct biochemical assignment of activity to each domain showed the LRR binds activated Ras and the gelsolin-like domain severs actin, defining FLII as a physical link between Ras signaling and actin remodeling.

    Evidence In vitro Kd binding measurement, yeast genetic suppression of activated RAS2, and in vitro actin-binding/severing assays on the C. elegans ortholog FLI-1

    PMID:10092519

    Open questions at the time
    • Performed on the C. elegans ortholog; conservation of activity in human FLII inferred
    • Cellular consequence of Ras binding not established
  3. 2006 Medium

    Identifying FLII as a transcriptional coregulator extended its role from the cytoskeleton into nuclear control of Wnt/beta-catenin signaling.

    Evidence Co-immunoprecipitation, reporter transcription assays, and siRNA knockdown of FLAP1 mapping FLII as an inhibitor of beta-catenin/LEF1 transcription opposed by FLAP1

    PMID:16990252

    Open questions at the time
    • Mechanism of FLII nuclear recruitment to target promoters not defined
    • Single-lab interaction mapping without orthogonal structural validation
  4. 2011 Medium

    Genetic gain- and loss-of-function in a skin blistering model linked FLII expression level to dermal integrity through TGF-beta1–Smad signaling.

    Evidence Murine Flii allele crosses with a collagen VII epidermolysis bullosa model, fibroblast collagen gel contraction assays, immunohistochemistry, and Western blot

    PMID:21984127

    Open questions at the time
    • Direct molecular link between FLII and the TGF-beta1–Smad pathway not biochemically resolved
    • Whether the actin or transcriptional activity of FLII drives the skin phenotype not separated
  5. 2016 High

    Identifying FLII as a Rac1 effector placed it in a specific GEF-defined migratory pathway, distinguishing its cytoskeletal role from generic RhoA/ROCK contraction.

    Evidence Mass spectrometry Rac1 interactome, reciprocal Co-IP, siRNA migration assays, and pharmacological inhibition establishing P-Rex1–Rac1–FLII pro-migratory signaling

    PMID:26887924

    Open questions at the time
    • Structural basis of the Rac1–FLII interaction not resolved
    • Whether actin severing by the gelsolin domain executes the migratory phenotype not directly tested

Open questions

Synthesis pass · forward-looking unresolved questions
  • How FLII integrates its actin-severing, small-GTPase-binding, and transcriptional coregulatory activities into a unified cellular program remains unresolved.
  • No structural model coupling LRR GTPase binding to gelsolin-domain actin severing
  • Mechanism of nuclear/cytoplasmic partitioning between transcriptional and cytoskeletal roles unknown

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0008092 cytoskeletal protein binding 2 GO:0060089 molecular transducer activity 2 GO:0140110 transcription regulator activity 1
Localization
GO:0005634 nucleus 1 GO:0005856 cytoskeleton 1
Pathway
R-HSA-162582 Signal Transduction 2 R-HSA-74160 Gene expression (Transcription) 1

Evidence

Reading pass · 5 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
1997 Human FLII encodes a 1269-residue protein containing an N-terminal leucine-rich repeat (LRR) domain and a C-terminal gelsolin-like actin-binding domain, with 58% amino acid identity to Drosophila Flightless I; FLII mRNA is most highly expressed in muscle, consistent with the flight-muscle function of the Drosophila ortholog. cDNA cloning, nucleotide sequencing, Northern blot expression analysis Genomics Medium 9177775
1999 The LRR domain of C. elegans FLI-1 (FLII ortholog) directly binds activated Ras with high affinity (Kd = 11 nM) and suppresses the heat-shock-sensitive phenotype of yeast bearing activated RAS2, while the gelsolin-like domain exhibits Ca2+-independent G-actin binding, F-actin binding, and F-actin severing activities. In vitro binding assay (Kd measurement), yeast genetic suppression assay, in vitro actin-binding and F-actin severing assays Biochemical and biophysical research communications High 10092519
2006 Human Flightless I (Fli-I/FLII) functions as a transcriptional coactivator; it inhibits beta-catenin/LEF1-dependent transcription, while its binding partner FLAP1 activates it. FLAP1 interacts directly with beta-catenin, GRIP1, and p300, and Fli-I disrupts the synergy between FLAP1, p300, and beta-catenin, placing FLII as a negative regulator of Wnt/beta-catenin signaling. Co-immunoprecipitation, reporter gene (transient transfection) transcription assays, siRNA knockdown of endogenous FLAP1 Nucleic acids research Medium 16990252
2016 FLII (flightless-1 homologue) interacts with activated Rac1 and mediates pro-migratory signaling downstream of the GEF P-Rex1 (but not Tiam1), modulating cell contraction in a RhoA-ROCK-independent manner; P-Rex1 stimulates Rac1–FLII interaction to enhance cell migration. Mass spectrometry-based Rac1 interactome profiling, co-immunoprecipitation, cell migration assays with siRNA knockdown, pharmacological inhibition Nature communications High 26887924
2011 Overexpression of Flii (FLII) in a murine autoimmune collagen VII (ColVII) epidermolysis bullosa model worsened skin blistering, while reduced Flii expression decreased blister severity, elevated integrin expression, improved ColVII production, and reduced α-SMA, TGF-β1, and Smad2/3 levels; Flii-deficient fibroblasts showed impaired collagen gel contraction that was restored by TGF-β1, demonstrating an interplay between FLII and TGF-β1 signaling in skin integrity. Murine Flii allele crosses with ColVII EBA model and ColVII hypomorphic mice, in vitro collagen gel contraction assay with Flii-deficient fibroblasts, immunohistochemistry and Western blot The Journal of pathology Medium 21984127

Source papers

Stage 0 corpus · 100 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2005 Immunohistochemical expression of endothelial markers CD31, CD34, von Willebrand factor, and Fli-1 in normal human tissues. The journal of histochemistry and cytochemistry : official journal of the Histochemistry Society 668 16234507
1994 DNA-binding and transcriptional activation properties of the EWS-FLI-1 fusion protein resulting from the t(11;22) translocation in Ewing sarcoma. Molecular and cellular biology 324 8164678
2006 Expression profiling of EWS/FLI identifies NKX2.2 as a critical target gene in Ewing's sarcoma. Cancer cell 297 16697960
2000 Fli-1 is required for murine vascular and megakaryocytic development and is hemizygously deleted in patients with thrombocytopenia. Immunity 297 10981960
2008 EWS-FLI-1 expression triggers a Ewing's sarcoma initiation program in primary human mesenchymal stem cells. Cancer research 278 18381423
2008 Distinct roles of the FliI ATPase and proton motive force in bacterial flagellar protein export. Nature 245 18216858
2008 Microsatellites as EWS/FLI response elements in Ewing's sarcoma. Proceedings of the National Academy of Sciences of the United States of America 243 18626011
2010 EWS-FLI-1 modulates miRNA145 and SOX2 expression to initiate mesenchymal stem cell reprogramming toward Ewing sarcoma cancer stem cells. Genes & development 230 20382729
1991 Salmonella typhimurium mutants defective in flagellar filament regrowth and sequence similarity of FliI to F0F1, vacuolar, and archaebacterial ATPase subunits. Journal of bacteriology 185 1646201
1993 EWS/Fli-1 chimeric protein is a transcriptional activator. Cancer research 159 7503813
2001 Analysis of the expression of cell cycle regulators in Ewing cell lines: EWS-FLI-1 modulates p57KIP2and c-Myc expression. Oncogene 148 11423975
2000 FliH, a soluble component of the type III flagellar export apparatus of Salmonella, forms a complex with FliI and inhibits its ATPase activity. Molecular microbiology 142 10998179
2001 Oncogenic TLS/ERG and EWS/Fli-1 fusion proteins inhibit RNA splicing mediated by YB-1 protein. Cancer research 139 11325824
1996 Enzymatic characterization of FliI. An ATPase involved in flagellar assembly in Salmonella typhimurium. The Journal of biological chemistry 138 8943245
2018 EWS/FLI Confers Tumor Cell Synthetic Lethality to CDK12 Inhibition in Ewing Sarcoma. Cancer cell 134 29358035
1996 EWS/FLI-1 antagonists induce growth inhibition of Ewing tumor cells in vitro. Cell growth & differentiation : the molecular biology journal of the American Association for Cancer Research 125 9052984
2007 Structural similarity between the flagellar type III ATPase FliI and F1-ATPase subunits. Proceedings of the National Academy of Sciences of the United States of America 124 17202259
2008 EWS/FLI mediates transcriptional repression via NKX2.2 during oncogenic transformation in Ewing's sarcoma. PloS one 119 18414662
2003 Functional cross-antagonism between transcription factors FLI-1 and EKLF. Molecular and cellular biology 114 12556498
2014 The ets transcription factor Fli-1 in development, cancer and disease. Oncogene 113 24909161
2005 Expression of the EWS/FLI-1 oncogene in murine primary bone-derived cells Results in EWS/FLI-1-dependent, ewing sarcoma-like tumors. Cancer research 113 16204038
1994 The FLI-1 and chimeric EWS-FLI-1 oncoproteins display similar DNA binding specificities. The Journal of biological chemistry 111 7517940
2000 The splicing factor U1C represses EWS/FLI-mediated transactivation. The Journal of biological chemistry 109 10827180
2003 Protein-protein interaction between Fli-1 and GATA-1 mediates synergistic expression of megakaryocyte-specific genes through cooperative DNA binding. Molecular and cellular biology 105 12724402
2000 The role of Fli-1 in normal cell function and malignant transformation. Oncogene 105 11175364
1992 The ERGB/Fli-1 gene: isolation and characterization of a new member of the family of human ETS transcription factors. Cell growth & differentiation : the molecular biology journal of the American Association for Cancer Research 105 1445800
1993 Analysis of the DNA-binding and transcriptional activation functions of human Fli-1 protein. Oncogene 102 8336942
2021 TRIM8 modulates the EWS/FLI oncoprotein to promote survival in Ewing sarcoma. Cancer cell 94 34329586
2003 Oligomerization and activation of the FliI ATPase central to bacterial flagellum assembly. Molecular microbiology 94 12787361
1993 Genetic and biochemical analysis of Salmonella typhimurium FliI, a flagellar protein related to the catalytic subunit of the F0F1 ATPase and to virulence proteins of mammalian and plant pathogens. Journal of bacteriology 92 8491729
1999 FLI-1 inhibits differentiation and induces proliferation of primary erythroblasts. Oncogene 90 10102630
2001 EWS/FLI alters 5'-splice site selection. The Journal of biological chemistry 84 11301318
1993 Characterization of the ets oncogene family member, fli-1. The Journal of biological chemistry 83 8449942
1994 Caulobacter flagellar function, but not assembly, requires FliL, a non-polarly localized membrane protein present in all cell types. Journal of molecular biology 81 7932752
2002 Molecular dissection of Salmonella FliH, a regulator of the ATPase FliI and the type III flagellar protein export pathway. Molecular microbiology 80 12180917
2007 EWS/FLI-1 induces rapid onset of myeloid/erythroid leukemia in mice. Molecular and cellular biology 79 17875932
2009 EWS/FLI and its downstream target NR0B1 interact directly to modulate transcription and oncogenesis in Ewing's sarcoma. Cancer research 76 19920188
1999 Transforming activity of EWS/FLI is not strictly dependent upon DNA-binding activity. Oncogene 75 10523836
2008 FliL is essential for swarming: motor rotation in absence of FliL fractures the flagellar rod in swarmer cells of Salmonella enterica. Molecular microbiology 72 18284590
2009 Differentiation-dependent interactions between RUNX-1 and FLI-1 during megakaryocyte development. Molecular and cellular biology 70 19470763
2016 Differential Rac1 signalling by guanine nucleotide exchange factors implicates FLII in regulating Rac1-driven cell migration. Nature communications 68 26887924
2011 A novel gene inactivation system reveals altered periplasmic flagellar orientation in a Borrelia burgdorferi fliL mutant. Journal of bacteriology 68 21441522
2009 Roles of the extreme N-terminal region of FliH for efficient localization of the FliH-FliI complex to the bacterial flagellar type III export apparatus. Molecular microbiology 67 19889085
2005 Role of FliF and FliI of Listeria monocytogenes in flagellar assembly and pathogenicity. Infection and immunity 65 16113269
2014 Assembly dynamics and the roles of FliI ATPase of the bacterial flagellar export apparatus. Scientific reports 64 25284201
2008 The transcription factor Fli-1 modulates marginal zone and follicular B cell development in mice. Journal of immunology (Baltimore, Md. : 1950) 63 18641300
1992 Structure and expression of human Fli-1 gene. Cancer research 63 1394211
2006 Interplay of Fli-I and FLAP1 for regulation of beta-catenin dependent transcription. Nucleic acids research 62 16990252
1989 Trigeminal nerve section induces Fos-like immunoreactivity (FLI) in brainstem and decreases FLI in sensory cortex. Brain research. Molecular brain research 61 2515410
2016 Therapeutic opportunities in Ewing sarcoma: EWS-FLI inhibition via LSD1 targeting. Oncotarget 60 26848860
2002 Intrinsic membrane targeting of the flagellar export ATPase FliI: interaction with acidic phospholipids and FliH. Journal of molecular biology 58 12054792
1999 Characterization of a novel Ras-binding protein Ce-FLI-1 comprising leucine-rich repeats and gelsolin-like domains. Biochemical and biophysical research communications 52 10092519
2015 A new player at the flagellar motor: FliL controls both motor output and bias. mBio 51 25714720
2006 Combined transcriptional and translational targeting of EWS/FLI-1 in Ewing's sarcoma. Clinical cancer research : an official journal of the American Association for Cancer Research 48 17121899
2023 Fatty liver index (FLI): more than a marker of hepatic steatosis. Journal of physiology and biochemistry 47 37875710
2017 Identification of two types of GGAA-microsatellites and their roles in EWS/FLI binding and gene regulation in Ewing sarcoma. PloS one 46 29091716
1995 EWS-FLI-1 and EWS-ERG chimeric mRNAs in Ewing's sarcoma and primitive neuroectodermal tumor. International journal of cancer 46 7591257
2011 Interaction between FliI ATPase and a flagellar chaperone FliT during bacterial flagellar protein export. Molecular microbiology 45 22111876
2010 The flagellar protein FliL is essential for swimming in Rhodobacter sphaeroides. Journal of bacteriology 44 20889747
2012 Drug-mediated inhibition of Fli-1 for the treatment of leukemia. Blood cancer journal 43 22829238
2022 EWS/FLI mediated reprogramming of 3D chromatin promotes an altered transcriptional state in Ewing sarcoma. Nucleic acids research 42 36124657
2019 Structure of Vibrio FliL, a New Stomatin-like Protein That Assists the Bacterial Flagellar Motor Function. mBio 42 30890608
2015 FliL associates with the stator to support torque generation of the sodium-driven polar flagellar motor of Vibrio. Molecular microbiology 42 26103585
2001 The COOH-terminal domain of FLI-1 is necessary for full tumorigenesis and transcriptional modulation by EWS/FLI-1. Cancer research 42 11431376
2011 The c-Abl tyrosine kinase controls protein kinase Cδ-induced Fli-1 phosphorylation in human dermal fibroblasts. Arthritis and rheumatism 40 21321929
1997 Identification of the fliI and fliJ components of the Caulobacter flagellar type III protein secretion system. Journal of bacteriology 40 9286988
2010 The Ewing's sarcoma fusion protein, EWS-FLI, binds Runx2 and blocks osteoblast differentiation. Journal of cellular biochemistry 39 20665663
2006 Identification of target genes in their native cellular context: an analysis of EWS/FLI in Ewing's sarcoma. Cell cycle (Georgetown, Tex.) 39 16969112
2013 BCL11B is up-regulated by EWS/FLI and contributes to the transformed phenotype in Ewing sarcoma. PloS one 38 23527175
2004 Dysregulation of granulocyte, erythrocyte, and NK cell lineages in Fli-1 gene-targeted mice. Blood 38 15367440
1997 Genomic structure, evolution, and expression of human FLII, a gelsolin and leucine-rich-repeat family member: overlap with LLGL. Genomics 38 9177775
2022 Current insights into the role of Fli-1 in hematopoiesis and malignant transformation. Cellular and molecular life sciences : CMLS 37 35412146
2014 The Fli-1 transcription factor regulates the expression of CCL5/RANTES. Journal of immunology (Baltimore, Md. : 1950) 37 25098295
2022 The flagellar motor protein FliL forms a scaffold of circumferentially positioned rings required for stator activation. Proceedings of the National Academy of Sciences of the United States of America 36 35046042
2019 Identification of diterpenoid compounds that interfere with Fli-1 DNA binding to suppress leukemogenesis. Cell death & disease 36 30741932
2001 Proteolytic analysis of the FliH/FliI complex, the ATPase component of the type III flagellar export apparatus of Salmonella. Journal of molecular biology 36 11580247
2009 ATP-induced FliI hexamerization facilitates bacterial flagellar protein export. Biochemical and biophysical research communications 35 19665005
2011 Overexpression of the Flii gene increases dermal-epidermal blistering in an autoimmune ColVII mouse model of epidermolysis bullosa acquisita. The Journal of pathology 34 21984127
2008 Microsatellites are EWS/FLI response elements: genomic "junk" is EWS/FLI's treasure. Cell cycle (Georgetown, Tex.) 34 18927503
1994 Characterization of the fliL gene in the flagellar regulon of Escherichia coli and Salmonella typhimurium. Journal of bacteriology 34 8157599
2008 Fli-1 expression in malignant melanoma. Histology and histopathology 33 18785112
2011 FLI-1 distinguishes Ewing sarcoma from small cell osteosarcoma and mesenchymal chondrosarcoma. Applied immunohistochemistry & molecular morphology : AIMM 32 21084965
2004 Role of protein-protein interactions in the antiapoptotic function of EWS-Fli-1. Oncogene 32 15273724
2016 FliH and FliI ensure efficient energy coupling of flagellar type III protein export in Salmonella. MicrobiologyOpen 31 26916245
2015 Mutations in the Borrelia burgdorferi Flagellar Type III Secretion System Genes fliH and fliI Profoundly Affect Spirochete Flagellar Assembly, Morphology, Motility, Structure, and Cell Division. mBio 31 25968649
2013 The transcription factor Fli-1 regulates monocyte, macrophage and dendritic cell development in mice. Immunology 31 23320737
1997 Functional interference between retinoic acid or steroid hormone receptors and the oncoprotein Fli-1. Oncogene 31 9444955
2021 One oncogene, several vulnerabilities: EWS/FLI targeted therapies for Ewing sarcoma. Journal of bone oncology 30 34976713
2018 Novel flavagline-like compounds with potent Fli-1 inhibitory activity suppress diverse types of leukemia. The FEBS journal 30 30387554
2018 Fli-1 Governs Pericyte Dysfunction in a Murine Model of Sepsis. The Journal of infectious diseases 29 30053030
2015 The role of FLI-1-EWS, a fusion gene reciprocal to EWS-FLI-1, in Ewing sarcoma. Genes & cancer 29 26807198
2012 EWS/FLI-responsive GGAA microsatellites exhibit polymorphic differences between European and African populations. Cancer genetics 29 22749036
2021 The FLI portion of EWS/FLI contributes a transcriptional regulatory function that is distinct and separable from its DNA-binding function in Ewing sarcoma. Oncogene 28 34145397
2014 Loss of FliL alters Proteus mirabilis surface sensing and temperature-dependent swarming. Journal of bacteriology 28 25331431
1997 A flagellar-specific ATPase (FliI) is necessary for flagellar export in Helicobacter pylori. FEMS microbiology letters 28 9231413
2012 Activity of Proteus mirabilis FliL is viscosity dependent and requires extragenic DNA. Journal of bacteriology 26 23222728
2003 EWS/FLI function varies in different cellular backgrounds. Experimental cell research 26 14567998
2002 Ets-1 regulates fli-1 expression in endothelial cells. Identification of ETS binding sites in the fli-1 gene promoter. The Journal of biological chemistry 26 11991951
2022 Suppression of Fli-1 protects against pericyte loss and cognitive deficits in Alzheimer's disease. Molecular therapy : the journal of the American Society of Gene Therapy 25 35038582
2010 EWS/Fli-1 chimeric fusion gene upregulates vascular endothelial growth factor-A. International journal of cancer 24 19642105

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