| 2006 |
FLCN (folliculin) physically interacts with a novel binding protein FNIP1, and this complex associates with AMPK. FNIP1 is phosphorylated by AMPK, and FLCN phosphorylation is reduced by AMPK inhibitors and rapamycin, and enhanced by FNIP1 overexpression, placing FLCN in the AMPK-mTOR signaling axis. |
Co-immunoprecipitation, yeast two-hybrid, in vitro phosphorylation assay, pharmacological inhibition (rapamycin, AMPK inhibitors), overexpression studies |
Proceedings of the National Academy of Sciences of the United States of America |
High |
17028174
|
| 2009 |
Homozygous BHD/FLCN knockout in mice causes early embryonic lethality (E5.5–E6.5) with defects in visceral endoderm; heterozygous knockout mice develop kidney tumors with loss of heterozygosity. BHD inactivation leads to activation of both mTORC1 and mTORC2, and PI3K-AKT pathway activation with elevated total AKT protein in kidney tumors. |
Conditional knockout mouse model, immunoblotting, LOH analysis, histological analysis |
Proceedings of the National Academy of Sciences of the United States of America |
High |
19850877
|
| 2008 |
Kidney-specific FLCN knockout in mice leads to polycystic kidneys, hyperplasia, and cystic renal cell carcinoma via activation of the mTOR pathway; rapamycin treatment rescues these phenotypes, demonstrating FLCN acts upstream to suppress mTOR signaling in kidney. |
Conditional knockout mouse model (Ksp-Cre), rapamycin treatment, histological analysis, BUN measurements |
PloS one |
High |
18974783
|
| 2010 |
FLCN inactivation induces nuclear localization of TFE3 transcription factor (accompanied by decreased TFE3 phosphorylation), leading to increased TFE3 transcriptional activity and upregulation of its target GPNMB. Restoration of wild-type FLCN suppresses GPNMB expression and nuclear TFE3. |
shRNA knockdown, stable re-expression, immunostaining, quantitative RT-PCR, immunoblotting in cell lines, mouse embryo fibroblasts, and mouse/human renal tumors |
PloS one |
High |
21209915
|
| 2019 |
Cryo-EM structure of the FLCN-FNIP2-Rag GTPase-Ragulator complex reveals that FLCN-FNIP2 adopts an extended conformation with heterodimerized Longin domains contacting Rag nucleotide-binding domains and DENN domains at the distal end. A conserved arginine on FLCN (catalytic arginine finger) is essential for its GAP activity toward RagC/D GTPases. |
Cryo-EM structure determination, biochemical GAP activity assays, mutagenesis of catalytic arginine |
Cell |
High |
31704029
|
| 2022 |
Cryo-EM structure of the active FLCN complex (AFC) with FLCN, FNIP2, SLC38A9 N-terminal tail, RagA(GDP):RagC(GDP·BeFx), and Ragulator shows FLCN reorients 90° relative to its inactive lysosomal conformation, breaks contact with RagA, and makes new contacts with RagC that position Arg164 for catalytic GAP activity. Disruption of AFC-specific interfaces eliminates GAP activity and causes nuclear retention of TFE3 without affecting S6K or 4E-BP1 phosphorylation. |
Cryo-EM structure determination, interface mutagenesis, GAP activity assay, TFE3 nuclear localization assay, S6K/4E-BP1 phosphorylation assay |
Science advances |
High |
36103527
|
| 2012 |
FLCN deficiency in muscle leads to increased mitochondrial biogenesis and a metabolic shift toward oxidative phosphorylation in a PGC-1α (PPARGC1A)-dependent manner. Re-expression of wild-type FLCN in FLCN-null kidney cancer cells suppresses mitochondrial metabolism and PPARGC1A expression. |
Tissue-specific conditional knockout mice (CKM-Cre, MYOG-Cre), electron microscopy (% mitochondrial area), metabolic profiling, immunoblotting, PPARGC1A double-knockout epistasis, oxygen consumption measurement |
Journal of the National Cancer Institute |
High |
23150719
|
| 2016 |
Adipose-specific deletion of FLCN relieves mTOR-dependent cytoplasmic retention of TFE3, leading to TFE3 nuclear translocation and direct induction of PGC-1α/PGC-1β, driving mitochondrial biogenesis and adipose browning. This is mediated by RagC/D GTPases independently of TSC-mTOR-S6K signaling. Co-deletion of TFE3 or PGC-1β rescues the browning phenotype. |
Adipose-specific FLCN KO mice, TFE3 co-deletion epistasis, PGC-1β co-deletion epistasis, TFE3 nuclear localization assay, gene expression analysis, inducible PGC-1β overexpression |
Genes & development |
High |
27913603
|
| 2016 |
Loss of FLCN in adipose tissue leads to chronic hyperactivation of AMPK, which induces PGC-1α and ERRα, driving mitochondrial biogenesis, oxidative metabolism, and browning of white adipose tissue. The AMPK/PGC-1α/ERRα molecular axis mediates these metabolic effects. |
Adipose-specific FLCN KO mice (Adipoq-FLCN), AMPK activity assays, gene expression analysis, mitochondrial biogenesis assays, metabolic phenotyping (energy expenditure, cold exposure, HFD resistance) |
Genes & development |
High |
27151976
|
| 2018 |
FLCN-FNIP lysosomal recruitment during amino acid starvation requires GATOR1 GAP activity toward RagA/B (converting them to GDP-bound state). By binding RagA/B(GDP) and acting as GAP on RagC/D, FLCN-FNIP coordinates nucleotide status between Rag heterodimer subunits in response to amino acid availability. |
Lysosomal fractionation, dominant-negative and constitutively active Rag GTPase mutants, GATOR1 depletion, fluorescence microscopy, immunoblotting |
The Journal of cell biology |
High |
29848618
|
| 2021 |
During autophagy-related processes (CASM, mitophagy, xenophagy), GABARAP (but not LC3) membrane conjugation is required for TFEB/TFE3 activation. GABARAP directly binds to a previously unidentified LIR motif in the FLCN/FNIP complex, sequestering it to GABARAP-conjugated membranes, disrupting FLCN/FNIP GAP function toward RagC/D and impairing mTOR-dependent phosphorylation of TFEB. |
Co-immunoprecipitation, LIR motif identification and mutagenesis, GABARAP lipidation assays, TFEB/TFE3 nuclear localization, RagC/D GAP activity assays, selective autophagy genetic models |
Science advances |
High |
34597140
|
| 2014 |
FLCN interacts with GABARAP (GABA-A receptor-associated protein), a core autophagy component. FLCN is phosphorylated by ULK1 at Ser406, Ser537, and Ser542. Loss of FLCN moderately impairs basal autophagic flux. The FLCN-GABARAP interaction is modulated by presence of FNIP1 or FNIP2 and regulated by ULK1. |
Co-immunoprecipitation, phosphorylation site mapping, ULK1 overexpression, autophagic flux assays (SQSTM1, MAP1LC3B, GABARAP levels), siRNA knockdown |
Autophagy |
Medium |
25126726
|
| 2009 |
FLCN phosphorylation at Ser62 and Ser302 is regulated by the Tsc2-mTORC1 pathway downstream of tuberin and Rheb. Downregulation of tuberin or overexpression of Rheb induces multiple FLCN phosphorylations. FLCN phosphorylation modulates its complex formation with AMPK. |
Immunoblotting with phospho-specific approaches, siRNA knockdown of TSC2, Rheb overexpression, AMPK co-immunoprecipitation |
Biochemical and biophysical research communications |
Medium |
19695222
|
| 2011 |
Pathogenic FLCN missense and in-frame deletion mutations that impair folliculin tumor suppressor function significantly disrupt protein stability (assessed in vitro). Mutations that did not impair protein stability also did not impair growth suppression activity or intracellular localization, indicating protein stability is a functional correlate. |
Cycloheximide chase assay, protein stability measurement, growth suppression assay in cell lines, intracellular localization by immunofluorescence, evolutionary analysis |
Human mutation |
Medium |
21538689
|
| 2010 |
Wild-type FLCN suppresses tumor development in FLCN-null renal cancer cells in nude mice in a dose-dependent manner. FLCN loss leads to downregulation of key TGF-β signaling genes including TGFB2, INHBA, THBS1, GREM1, and SMAD3. Activin A (INHBA homodimer) completely suppresses anchorage-independent growth of FLCN-null cells. |
Xenograft tumor assay, differential gene expression, ELISA for secreted proteins, anchorage-independent growth assay, FLCN stable re-expression |
Molecular cancer |
Medium |
20573232
|
| 2019 |
FLCN and AMPK act upstream of TFEB/TFE3 in the innate immune response independently of the mTORC1 signaling pathway. In C. elegans, loss of FLCN confers pathogen resistance via AMPK-dependent TFEB/TFE3 activation. In mammalian cells, loss of FLCN or AMPK activation induces TFEB/TFE3-dependent pro-inflammatory cytokine expression. LPS treatment of macrophages reduces ATP and activates AMPK with concomitant TFEB nuclear localization. |
C. elegans genetic epistasis (flcn-1 deletion, AMPK overexpression/deletion), mammalian FLCN KO cells, pharmacological AMPK activation, LPS treatment, nuclear localization assays, cytokine expression measurement |
Cell reports |
High |
30917316
|
| 2015 |
In C. elegans, FLCN-1 (FLCN ortholog) loss leads to constitutive AMPK-dependent accumulation of glycogen stores, conferring resistance to hyperosmotic stress. Upon stress, glycogen is degraded to produce glycerol through GPDH enzymes. This resistance requires AMPK, glycogen synthase, and glycogen phosphorylase. Glycogen accumulates in kidneys of FLCN-deficient mice and renal tumors from BHD patients. |
C. elegans genetics (loss-of-function mutations, epistasis), glycogen measurement, glycerol production assay, GPDH enzyme inhibition, mouse kidney histology, human tumor tissue analysis |
PLoS genetics |
Medium |
26439621
|
| 2011 |
The AMPK-MAPO1(FNIP2)-FLCN complex is required for apoptosis triggered by O6-methylguanine DNA damage. siRNA knockdown of FLCN or FNIP2/MAPO1 suppresses sub-G1 accumulation after MNU treatment. AMPK phosphorylation after MNU occurs in an MLH1-dependent manner and requires both MAPO1 and FLCN for normal AMPK activation. |
siRNA knockdown, cell cycle analysis (sub-G1), AMPK phosphorylation immunoblotting, AICAR treatment, mitochondrial membrane potential assay |
DNA repair |
Medium |
22209521
|
| 2014 |
Loss of FLCN in cardiomyocytes causes severe cardiac hypertrophy via mTORC1 upregulation. Flcn-deficient hearts show reduced phospho-AMPK-α (T172), elevated ATP, and increased mitochondrial function. Upregulated PPARGC1A (PGC-1α) drives excess mitochondrial metabolism, leading to AMPK inactivation and mTORC1 activation. Inactivation of PPARGC1A in Flcn-deficient hearts reduces heart mass, restores phospho-AMPK, and suppresses mTORC1. |
Cardiac-specific FLCN KO mice, PPARGC1A double KO epistasis, rapamycin treatment, AMPK activity assays, ATP measurement, mitochondrial function assays, echocardiography |
Human molecular genetics |
High |
24908670
|
| 2006 |
Drosophila BHD homolog (DBHD) is required for germline stem cell (GSC) maintenance in fly testis. RNAi-mediated reduction of DBHD suppresses the GSC overproliferation phenotype caused by overexpression of the JAK/STAT ligand unpaired (upd) or the Dpp pathway, placing DBHD downstream or in parallel of JAK/STAT and Dpp signaling in GSC regulation. |
RNAi knockdown, genetic epistasis with JAK/STAT and Dpp pathway components, germline stem cell counting in fly testis |
Oncogene |
Medium |
16636660
|
| 2019 |
AMPK promotes expression of the FLCN tumor suppressor gene through activation of TFEB independently of mTOR. AMPK-induced FLCN expression is abolished in cells lacking TFEB/TFE3, and mutation of the putative TFEB-binding site in the FLCN promoter abrogates promoter activity, defining an AMPK-TFEB-FLCN transcriptional axis. |
Transcriptomic profiling, AMPK-deficient MEFs, pharmacological AMPK activators, TFEB/TFE3 double KO, FLCN promoter-luciferase reporter assay with TFEB site mutation, zebrafish exercise model |
FASEB journal |
Medium |
31404503
|
| 2020 |
FLCN loss in hematopoietic cells disrupts a FLCN-TFE3 feedback loop: TFE3 normally transcriptionally activates FLCN expression, and loss of FLCN amplifies TFE3 activity. TFE3 stimulates glycogenesis by promoting expression of glycogenesis genes (Gys1, Gyg). TFE3 deletion in Flcn-KO mice reduces phagocyte expansion and lysosomal storage disorder-like phenotypes. |
Hematopoietic-specific Flcn KO mice, Tfe3 co-deletion epistasis, transcriptional target analysis (ChIP/gene expression), glycogen accumulation assays, histological analysis |
Cell reports |
Medium |
32049013
|
| 2020 |
Genetic deficiency of Folliculin in mice causes misconnection of blood and lymphatic vessels due to ectopic expression of Prox1 in venous endothelial cells. Mechanistically, FLCN loss leads to nuclear translocation of TFE3, which binds a regulatory element of the Prox1 gene to enhance its venous expression. |
Endothelial-specific FLCN KO mice, TFE3 nuclear localization by immunofluorescence, ChIP assay for TFE3 binding to Prox1 regulatory element, Prox1 expression analysis, vascular anatomy analysis in mice and humans |
Nature communications |
High |
33298956
|
| 2016 |
FLCN maintains the leucine level within lysosomes to stimulate mTORC1. FLCN suppression reduces lysosomal leucine content and mTORC1 activity; both effects are reversed by high leucine supplementation but not other amino acids. FLCN exerts this function by inhibiting accumulation of the amino acid transporter PAT1 on the lysosome surface. |
FLCN knockdown/overexpression in HEK293 cells, lysosomal amino acid measurement, mTORC1 activity assay (S6K phosphorylation), PAT1 localization by immunofluorescence, leucine rescue experiments |
PloS one |
Medium |
27280402
|
| 2018 |
FLCN interacts with Rab11A through its C-terminal DENN-like domain. FLCN promotes loading of the amino acid transporter PAT1 onto Rab11A vesicles for recycling to the plasma membrane, preventing PAT1 accumulation on lysosomes and maintaining lysosomal amino acid levels for mTORC1 activation. In vitro GEF activity assay does not support direct FLCN-mediated modification of Rab11A nucleotide state. |
Co-immunoprecipitation, domain-mapping pulldown, PAT1 localization by immunofluorescence, mTORC1 activity assay, in vitro GEF assay (negative result for direct GEF activity on Rab11A), siRNA knockdown |
Journal of cell science |
Medium |
30446510
|
| 2021 |
FLCN promotes Rab11A binding with transferrin receptor 1 (TfR1), which is required for TfR1 recycling between cell surface and cytoplasm. Loss of FLCN attenuates Rab11A-TfR1 interaction, delays TfR1 recycling, causes iron deficiency, and induces HIF activity. Iron supplementation reverses the HIF activation, and iron-rich diet rescues BHD phenotypes in Drosophila. |
Co-immunoprecipitation (Rab11A-TfR1), TfR1 recycling assay, HIF activity reporter, iron measurement, siRNA knockdown, Drosophila BHD model with dietary iron rescue |
The Journal of biological chemistry |
Medium |
33609526
|
| 2015 |
FLCN-null cells exhibit dysregulated cofilin de/phosphorylation pathways. SSH2 serine phosphatase knockdown specifically induces Caspase3/7-dependent apoptosis in FLCN-deficient cells but not in isogenic FLCN-expressing cells, identifying a synthetic lethal interaction between FLCN loss and SSH2. |
siRNA library screening, Caspase3/7 activity assay, cell cycle analysis, SSH1/2/3 expression measurement, FLCN isogenic cell line comparison |
Oncogene |
Medium |
23416984
|
| 2019 |
Loss of FLCN in human renal tubular epithelial cells activates TFE3 and upregulates its E-box targets RRAGD and GPNMB without modifying mTORC1 activity. FLCN loss or loss of its binding partners FNIP1/FNIP2 induces a non-canonical interferon response independently of interferon, involving STAT2 recruitment to chromatin and slowed cellular proliferation. |
FLCN/FNIP1/FNIP2 CRISPR knockout in RPTEC/TERT1 cells, RNA-seq, ChIP for STAT2, mTORC1 activity assays, TFE3 target gene expression, proliferation assays |
eLife |
Medium |
33459596
|
| 2019 |
Loss of FLCN inhibits canonical WNT signaling via TFE3. FLCN deficiency decreases expression of Wnt2, Wnt7b, TCF4, LEF1, BCL9, AXIN2, and BMP4. Constitutively active β-catenin only partially rescues decreased WNT activity, whereas silencing TFE3 completely reverses the WNT activity deficit in FLCN-deficient cells, placing TFE3 as a key mediator of FLCN-dependent WNT regulation. |
Flcn inactivation in MEFs and human fetal lung fibroblasts, RNA-seq, TCF/LEF luciferase reporter assay, TFE3 siRNA epistasis, constitutively active β-catenin rescue |
Human molecular genetics |
Medium |
31272105
|
| 2015 |
FLCN is a novel modifier of TDP-43 cytoplasmic translocation and aggregation. FLCN directly interacts with TDP-43 through FLCN amino acids 202-299 and the RNA-recognition motif domains of TDP-43. Both exogenous and endogenous FLCN are required for TDP-43 cytoplasmic accumulation, protein aggregation, and stress granule formation. |
Co-immunoprecipitation, domain-mapping truncation assays, siRNA knockdown, overexpression, immunofluorescence for TDP-43 localization and aggregation, stress granule assay |
Human molecular genetics |
Medium |
26516189
|
| 2023 |
AKT1 phosphorylates FLCN at a conserved site (Ser62) in an insulin-responsive manner. mTORC2-AKT1 is recruited to lysosomes by RagD, and this lysosomal RagD-mTORC2-AKT1 recruitment is an essential step for insulin-stimulated FLCN phosphorylation. FLCN phosphorylation inhibits RagC GAP activity and is required for insulin-induced mTORC1 activation and promotes tumor growth in an mTORC1-dependent manner. |
In vitro kinase assay (AKT1 phosphorylation of FLCN), lysosomal fractionation, RagD mutant studies, mTORC1 activity assay, FLCN phospho-site mutagenesis, xenograft tumor model |
Advanced science |
Medium |
37083230
|
| 2021 |
Loss of hepatic FLCN activates TFEB and TFE3, promoting autophagy, reducing triglyceride accumulation, fibrosis, and inflammation in a methionine- and choline-deficient diet liver disease model. |
Liver-specific FLCN KO mice, TFEB/TFE3 nuclear localization assay, autophagic flux measurement, lipid accumulation assay, fibrosis scoring, inflammatory marker assessment |
Scientific reports |
Medium |
34711912
|
| 2017 |
FLCN missense mutants H255Y and K508R promote aberrant kidney cell proliferation. H255Y mutant transgene expression fails to rescue the multi-cystic kidney phenotype of Flcn-deficient mice. K508R mutant transgene partially rescues the phenotype in full KO mice but induces multi-cystic kidneys and cardiac hypertrophy in heterozygous KO mice, suggesting dominant negative activity of K508R on wild-type FLCN. |
BAC recombineering transgenic mice, Flcn-KO kidney phenotype rescue assay, histological analysis, cardiac phenotyping |
Human molecular genetics |
Medium |
28007907
|
| 2017 |
FNIP2 protein stability is regulated by SCFβ-TRCP E3 ubiquitin ligase and Casein Kinase 1 (CK1) in a nutrition-dependent manner. Degradation of FNIP2 leads to lysosomal dissociation of FLCN and subsequent lysosomal association of mTOR, promoting renal cancer cell proliferation. |
Proteasome inhibitor experiments, β-TRCP and CK1 inhibition/knockdown, ubiquitination assays, lysosomal fractionation for FLCN and mTOR localization, proliferation assays |
Oncotarget |
Medium |
28039480
|
| 2023 |
PRDM10 directly binds a regulatory motif in the FLCN promoter and controls FLCN transcription. The PRDM10 Cys677Tyr variant loses affinity for this FLCN promoter element, abrogating FLCN mRNA and protein levels in human cells. |
DNA binding assay for PRDM10 at FLCN promoter, promoter reporter assay, inducible PRDM10 Cys677Tyr overexpression, RNA-seq, FLCN protein quantification |
Human molecular genetics |
Medium |
36440963
|