Affinage

EHBP1

EH domain-binding protein 1 · UniProt Q8NDI1

Length
1231 aa
Mass
140.0 kDa
Annotated
2026-04-28
18 papers in source corpus 12 papers cited in narrative 12 extracted findings

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

EHBP1 is a multidomain endosomal adaptor protein that coordinates membrane trafficking with the actin cytoskeleton across diverse cellular contexts, including endocytic recycling, lipophagy, polarized secretion, dendritic morphogenesis, cholesterol metabolism, and ciliary function. Its N-terminal C2 domain binds phosphoinositides for membrane targeting, its central calponin homology (CH) domain binds F-actin, and its C-terminal bMERB domain engages active Rab8/Rab10 GTPases; in the resting state, the bMERB domain auto-inhibits the CH domain, and Rab8 binding relieves this inhibition to enable simultaneous actin and membrane engagement (PMID:32826901). EHBP1 recruits EHD1/EHD2 via NPF motifs to promote GLUT4 recycling and transferrin endocytosis (PMID:14676205, PMID:15247266), forms a Rab10–EHBP1–EHD2 complex required for LC3 recruitment during lipophagy (PMID:28028537), facilitates sortilin-mediated PCSK9 secretion and LDL receptor turnover through retromer complex regulation (PMID:40015280), and participates in neuronal dendritic arborization via syndapin I–Cobl complexes (PMID:38129132). EHBP1 also directs polarized Wnt secretion by competing with Wntless for AP-1 adaptor binding (PMID:39402333) and localizes to the primary cilium in an INPP5E-dependent manner (PMID:41805112).

Mechanistic history

Synthesis pass · year-by-year structured walk · 11 steps
  1. 2003 High

    Identification of EHBP1 as an EHD2-interacting, actin-binding endocytic adaptor established its foundational role in coupling clathrin-mediated endocytosis to the actin cytoskeleton, with knockdown blocking transferrin and GLUT4 internalization.

    Evidence Co-immunoprecipitation, siRNA knockdown, and endocytosis assays in mammalian cells

    PMID:14676205

    Open questions at the time
    • Structural basis for NPF–EH domain interaction not resolved
    • Whether EHBP1 functions beyond endocytosis was unknown
    • In vivo validation in animal models lacking
  2. 2004 High

    Demonstration that EHBP1 interacts with EHD1 and is required for insulin-stimulated GLUT4 recycling extended its role from endocytic internalization to regulated exocytic recycling in adipocytes.

    Evidence Co-immunoprecipitation, siRNA knockdown, GLUT4 translocation and hexose transport assays in 3T3-L1 adipocytes

    PMID:15247266

    Open questions at the time
    • Whether Rab GTPases participate in this pathway was unknown
    • Mechanism of insulin-dependent regulation of EHBP1 not addressed
  3. 2010 High

    Discovery that the C. elegans ortholog EHBP-1 directly binds RAB-10 and shares its endosomal recycling phenotype established Rab10 as a key upstream regulator of EHBP1 function, conserved across metazoans.

    Evidence Yeast two-hybrid, in vivo colocalization, and genetic loss-of-function in C. elegans

    PMID:20573983

    Open questions at the time
    • Binding interface between Rab10 and EHBP1 unresolved
    • Whether this interaction is direct in mammalian cells not yet tested
  4. 2013 Medium

    Genetic analysis in Drosophila showed that EHBP1 controls Scabrous exocytosis during photoreceptor fate determination, revealing a role in developmental signaling cargo secretion beyond constitutive recycling.

    Evidence Genetic loss-of-function in Drosophila with photoreceptor fate and Scabrous trafficking analysis

    PMID:23788431

    Open questions at the time
    • Molecular mechanism of EHBP1 in exocytic cargo sorting not defined
    • Not confirmed in mammalian developmental contexts
    • Single laboratory study
  5. 2016 High

    Identification of a Rab10–EHBP1–EHD2 complex on autophagic membranes at lipid droplets demonstrated that EHBP1 functions in selective autophagy (lipophagy), linking it to LC3 recruitment and lipid droplet engulfment in hepatocytes.

    Evidence siRNA knockdown, dominant-negative Rab10, immunofluorescence, and lipid droplet accumulation assay in hepatocytes

    PMID:28028537

    Open questions at the time
    • How EHBP1 connects to autophagosomal machinery mechanistically unclear
    • Whether lipophagy role extends to other cell types not tested
  6. 2020 High

    Crystal structures of the auto-inhibited CH:bMERB complex and the activating bMERB:Rab8 complex revealed the allosteric switch mechanism: Rab8 binding to the bMERB domain displaces the CH domain, enabling actin binding and membrane tubulation, providing the first structural framework for EHBP1 regulation.

    Evidence X-ray crystallography, structure-based mutagenesis, liposome binding, and membrane tubulation reconstitution in vitro

    PMID:32826901

    Open questions at the time
    • Whether auto-inhibition is regulated by post-translational modifications unknown
    • In vivo validation of the structural switch in trafficking contexts not performed
  7. 2024 High

    Discovery that EHBP1 forms ternary complexes with syndapin I and the actin nucleator Cobl at dendritic branch sites established a neuronal-specific function for EHBP1 in dendritic arborization, mediated by a chordata-specific syndapin-binding motif.

    Evidence Co-immunoprecipitation, domain mutagenesis, loss- and gain-of-function with rescue in rat hippocampal neurons, live imaging

    PMID:38129132

    Open questions at the time
    • Whether this complex is regulated by Rab GTPases is unknown
    • Relevance to neurodevelopmental disease not established
  8. 2024 Medium

    Demonstration that EHBP1 competes with Wntless for AP-1 adaptor complex binding to redirect Wnt/Wingless secretion apically revealed a new mechanism by which EHBP1 acts as a directional switch for polarized cargo sorting.

    Evidence Genetic epistasis in Drosophila, Co-IP competition assay for AP-1 binding, domain deletion analysis

    PMID:39402333

    Open questions at the time
    • Conservation of AP-1 competition mechanism in vertebrate Wnt secretion untested
    • Single laboratory study
    • Whether bMERB coiled-coil motif mediates AP-1 binding directly or indirectly unclear
  9. 2025 Medium

    Mechanistic dissection in C. elegans showed that EHBP-1 captures RAB-10-positive lipoprotein exocytic carriers via its coiled-coil and C2 domains, delivering them to recycling endosomes with downstream exocyst involvement, establishing a RAB-10–EHBP-1–exocyst axis in exocytic trafficking.

    Evidence Genetic epistasis, live imaging, domain deletion and GEF identification in C. elegans

    PMID:39702707

    Open questions at the time
    • Whether this exocytic capture mechanism is conserved in mammalian cells unknown
    • Direct biochemical reconstitution of the capture step not performed
  10. 2025 High

    Discovery that EHBP1 promotes sortilin-mediated PCSK9 secretion via retromer stabilization linked EHBP1 to cholesterol metabolism and MASH fibrosis; EHBP1 deficiency disrupted retromer localization, increasing hepatic LDLR levels and downstream fibrogenic TAZ signaling.

    Evidence In vivo loss- and gain-of-function in mice on MASH diet, PCSK9 secretion, LDLR, retromer localization, and TAZ assays

    PMID:40015280

    Open questions at the time
    • Direct physical interaction between EHBP1 and retromer subunits not demonstrated
    • Whether this is Rab10-dependent in hepatocytes not addressed
  11. 2026 Medium

    Localization of EHBP1 to the basal body and ciliary compartment, dependent on INPP5E phosphoinositide regulation, placed EHBP1 in a ciliary functional module with potential relevance to ciliopathies.

    Evidence BioID proximity labeling, immunofluorescence in fibroblasts/RPE/retinal organoids, INPP5E knockout and patient mutations

    PMID:41805112

    Open questions at the time
    • Functional role of EHBP1 at the cilium not established
    • Whether EHBP1 loss causes ciliary defects not tested
    • Single laboratory study

Open questions

Synthesis pass · forward-looking unresolved questions
  • The mechanism by which EHBP1 integrates its multiple domain-level activities (C2, CH, bMERB, NPF) to select among distinct trafficking routes — endocytic recycling, lipophagy, polarized secretion, retromer-dependent sorting, and ciliary targeting — in a context-dependent manner remains unresolved.
  • No unified model explaining pathway selectivity across cell types
  • Post-translational regulation of EHBP1 function unexplored
  • Full interactome in mammalian cells not systematically mapped

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0060090 molecular adaptor activity 4 GO:0008092 cytoskeletal protein binding 3 GO:0008289 lipid binding 1
Localization
GO:0005856 cytoskeleton 3 GO:0005768 endosome 2 GO:0031410 cytoplasmic vesicle 2 GO:0005929 cilium 1
Pathway
R-HSA-5653656 Vesicle-mediated transport 5 R-HSA-162582 Signal Transduction 2 R-HSA-1430728 Metabolism 1 R-HSA-9612973 Autophagy 1
Complex memberships
EHBP1-syndapin I-Cobl complexRab10-EHBP1-EHD2 complex

Evidence

Reading pass · 12 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2003 EHBP1 interacts with EHD2 via NPF repeats binding to EHD2's C-terminal EH domain, and together they couple clathrin-mediated endocytosis to the actin cytoskeleton; EHBP1 contains a calponin homology (CH) domain that mediates actin binding, and siRNA knockdown of EHBP1 inhibits transferrin and GLUT4 endocytosis into EEA1-positive endosomes. Co-immunoprecipitation, siRNA knockdown, transferrin/GLUT4 endocytosis assay, overexpression-induced actin reorganization The Journal of biological chemistry High 14676205
2004 EHBP1 interacts with EHD1 (via EHD1's EH domain) and is required for insulin-stimulated GLUT4 recycling and glucose transport in adipocytes; siRNA depletion of EHBP1 disrupts insulin-regulated GLUT4 movements. Co-immunoprecipitation, siRNA knockdown, GLUT4 translocation assay, hexose transport assay in 3T3-L1 adipocytes The Journal of biological chemistry High 15247266
2010 C. elegans EHBP-1 (ortholog of EHBP1) was identified as a direct binding partner of RAB-10 in a yeast two-hybrid screen; EHBP-1 colocalizes with RAB-10 on endosomal structures and ehbp-1 loss-of-function mutants share endosome morphology and cargo localization defects with rab-10 mutants, placing EHBP1 in the RAB-10-regulated endocytic recycling pathway. Yeast two-hybrid, in vivo colocalization (GFP/RFP tagging), genetic loss-of-function in C. elegans Molecular biology of the cell High 20573983
2016 During autophagy in hepatocytes, active Rab10 recruits EHBP1 and the membrane-deforming ATPase EHD2 to nascent autophagic membranes at the lipid droplet surface; this Rab10-EHBP1-EHD2 complex is essential for LC3 recruitment to the autophagosome and for the engulfment of lipid droplets during lipophagy. siRNA knockdown, expression of GTPase-defective Rab10, immunofluorescence colocalization, lipid droplet accumulation assay in hepatocytes Science advances High 28028537
2013 Drosophila EHBP1 (dEHBP1, ortholog) controls the exocytosis of Scabrous, a positive regulator of Notch signaling, during lateral inhibition to specify R8 photoreceptors; loss of dEHBP1 results in supernumerary R8 photoreceptors due to defective Scabrous trafficking. Genetic loss-of-function in Drosophila, photoreceptor fate analysis, Scabrous secretion assay Journal of cell science Medium 23788431
2020 EHBP1 contains an N-terminal C2 domain that binds PI(3)P, PI(5)P, and phosphatidylserine for membrane targeting; in the absence of Rab8 family members, the C-terminal bivalent Mical/EHBP Rab binding (bMERB) domain forms an intramolecular auto-inhibitory complex with the central CH domain, blocking actin binding; Rab8 binding to the bMERB domain relieves this auto-inhibition, freeing the CH domain to bind actin and drive membrane tubulation. In vitro biochemical assays, X-ray crystallography of CH:bMERB and bMERB:Rab8 complexes, structure-based mutagenesis, liposome binding assays, membrane tubulation assay Nature communications High 32826901
2014 EHBP1 interacts with P-Rex1 (a guanine nucleotide exchange factor implicated in invasive growth) in prostate cancer cells, and EHBP1 is required downstream of P2X7 receptor signaling for the anti-invasive effect of atorvastatin. Co-immunoprecipitation, siRNA knockdown, invasion assay in prostate cancer cells Carcinogenesis Medium 24451147
2024 EHBP1 contains a chordata-specific motif that mediates interaction with syndapin I (an F-BAR domain membrane-shaping protein); the EHBP1–syndapin I interaction, along with the C2 and CH domains of EHBP1 and the actin nucleator Cobl, is required for dendritic arbor formation in hippocampal neurons; syndapin I organizes ternary complexes of EHBP1–syndapin I–Cobl at nascent dendritic branch sites. Co-immunoprecipitation, gain- and loss-of-function in rat primary hippocampal neurons, domain deletion/mutation analysis, live imaging of EHBP1 and syndapin I dynamics, rescue experiments The Journal of neuroscience High 38129132
2025 EHBP1 promotes sortilin-mediated PCSK9 secretion, which leads to LDL receptor degradation, decreased LDL uptake, and reduced levels of the fibrogenic effector TAZ; EHBP1 deficiency disrupts intracellular localization of the retromer complex (required for sortilin stabilization), thereby increasing hepatic cholesterol uptake and MASH fibrosis. EHBP1 loss- and gain-of-function in mice (dietary MASH model), PCSK9 secretion assay, LDLR protein assay, retromer localization by immunofluorescence, TAZ measurement Cell metabolism High 40015280
2024 In Drosophila wing disc epithelium (conserved in vertebrates), Ehbp1 acts as a directional switch for polarized Wnt/Wingless transport by competing with the Wg cargo receptor Wntless for binding to the AP-1 adaptor complex; Ehbp1 sequestration of AP-1 prevents basolateral delivery and redirects Wg for apical secretion; removal of Ehbp1's coiled-coil motifs within its bMERB domain abolishes this function. Genetic epistasis in Drosophila, co-immunoprecipitation (Ehbp1 vs. Wntless for AP-1 binding), domain deletion analysis, Wg localization assay EMBO reports Medium 39402333
2025 In C. elegans, EHBP-1 localizes to recycling endosomes and captures RAB-10-positive lipoprotein exocytic carriers through its interaction with active RAB-10, promoting delivery of exocytic cargo to recycling endosomes; this mechanism requires both EHBP-1's RAB-10-binding coiled-coil domain and its PI(4,5)P2-binding C2 domain; the GEF LST-6/DENND5 specifically activates RAB-10 in this pathway, and the exocyst complex acts downstream of RAB-10-EHBP-1 capture. Genetic analysis in C. elegans, live imaging, domain deletion/mutation analysis, GEF identification by genetic epistasis, exocyst epistasis The Journal of cell biology Medium 39702707
2026 EHBP1 localizes to the basal body and ciliary compartment of the primary cilium in human fibroblasts and RPE cells, and to the outer membrane of developing photoreceptors in retinal organoids; INPP5E dysfunction (patient mutations or CRISPR knockout) alters EHBP1 ciliary localization, placing EHBP1 in an INPP5E-regulated ciliary functional module. Proximity-labeling proteomics (INPP5E BioID), immunofluorescence localization in fibroblasts/RPE/retinal organoids, CRISPR/Cas9 knockout of INPP5E, patient mutation fibroblasts Journal of cell science Medium 41805112

Source papers

Stage 0 corpus · 18 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2016 A novel Rab10-EHBP1-EHD2 complex essential for the autophagic engulfment of lipid droplets. Science advances 152 28028537
2003 EHD2 and the novel EH domain binding protein EHBP1 couple endocytosis to the actin cytoskeleton. The Journal of biological chemistry 133 14676205
2004 Role of EHD1 and EHBP1 in perinuclear sorting and insulin-regulated GLUT4 recycling in 3T3-L1 adipocytes. The Journal of biological chemistry 103 15247266
2010 EHBP-1 functions with RAB-10 during endocytic recycling in Caenorhabditis elegans. Molecular biology of the cell 102 20573983
2014 Atorvastatin prevents ATP-driven invasiveness via P2X7 and EHBP1 signaling in PTEN-expressing prostate cancer cells. Carcinogenesis 59 24451147
2020 The mechanism of activation of the actin binding protein EHBP1 by Rab8 family members. Nature communications 27 32826901
2020 Identification of a Novel EHBP1-MET Fusion in an Intrahepatic Cholangiocarcinoma Responding to Crizotinib. The oncologist 19 32897609
2013 Drosophila EHBP1 regulates Scabrous secretion during Notch-mediated lateral inhibition. Journal of cell science 11 23788431
2025 EHBP1 suppresses liver fibrosis in metabolic dysfunction-associated steatohepatitis. Cell metabolism 10 40015280
2020 EHBP1 SNPs, Their Haplotypes, and Gene-Environment Interactive Effects on Serum Lipid Levels. ACS omega 7 32280856
2022 Spitz nevus with EHBP1-ALK fusion and distinctive membranous localization of ALK. Journal of cutaneous pathology 6 35113459
2025 RAB-10 cooperates with EHBP-1 to capture vesicular carriers during post-Golgi exocytic trafficking. The Journal of cell biology 5 39982707
2022 EHBP1, TUBB, and WWOX SNPs, Gene-Gene and Gene-Environment Interactions on Coronary Artery Disease and Ischemic Stroke. Frontiers in genetics 5 35559044
2024 EHBP1 Is Critically Involved in the Dendritic Arbor Formation and Is Coupled to Factors Promoting Actin Filament Formation. The Journal of neuroscience : the official journal of the Society for Neuroscience 3 38129132
2024 Ehbp1 orchestrates orderly sorting of Wnt/Wingless to the basolateral and apical cell membranes. EMBO reports 2 39402333
2024 Association between the EHBP1 SNPs and dyslipidemia in the end-stage renal disease patients with dialysis in Chinese Han population. Lipids in health and disease 1 39731114
2026 The EH Binding protein EHBP1 operates in a ciliary functional module affected by INPP5E dysfunction. Journal of cell science 0 41805112
2025 The Relationship of the Pathogenic Variant rs721048 in the Intron of the EHBP1 Gene with the Development of Prostate Cancer and Colorectal Cancer in the Kazakh Population. Genes 0 40004500