Affinage

COMMD2

COMM domain-containing protein 2 · UniProt Q86X83

Round 2 corrected
Length
199 aa
Mass
22.7 kDa
Annotated
2026-04-28
39 papers in source corpus 9 papers cited in narrative 9 extracted findings

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

COMMD2 is a subunit of the hetero-decameric COMMD ring within the Commander complex, where it participates in endosomal recycling of diverse transmembrane cargo and in NF-κB signaling regulation. COMMD2 was identified as one of ten COMM-domain-containing proteins that form multimeric assemblies, bind CCDC22/CCDC93, and inhibit NF-κB activity by regulating IκB ubiquitination (PMID:15799966, PMID:23563313). As part of the CCC (COMMD/CCDC22/CCDC93) complex, COMMD2 localizes to early endosomes, couples to the WASH complex and Retriever, and mediates retromer-independent recycling of >120 cell-surface proteins including integrins and the copper transporter ATP7A (PMID:25355947, PMID:28892079). Cryo-EM and X-ray crystallography resolved the position of COMMD2 within the decameric COMMD ring, revealing stabilizing interactions with the CCDC22–CCDC93 coiled-coil scaffold that bridges the CCC and Retriever sub-assemblies (PMID:37172566).

Mechanistic history

Synthesis pass · year-by-year structured walk · 7 steps
  1. 2005 High

    Identification of COMMD2 as a member of a new protein family sharing the COMM domain established that, like COMMD1, it forms multimeric complexes and inhibits NF-κB, providing the first functional framework for the gene.

    Evidence Co-immunoprecipitation and NF-κB reporter assays in mammalian cells

    PMID:15799966

    Open questions at the time
    • Mechanism by which COMMD2 inhibits NF-κB not defined
    • Stoichiometry and composition of COMMD multimers unknown
    • Endogenous physiological context of NF-κB inhibition not tested
  2. 2013 High

    Discovery that COMMD2 binds CCDC22—a coiled-coil protein mutated in X-linked intellectual disability—placed it within the CCC complex and connected COMMD-mediated NF-κB regulation to IκB ubiquitination and a human disease locus.

    Evidence Reciprocal co-immunoprecipitation of all COMMD proteins with CCDC22; patient-derived cell analysis; NF-κB activation assays

    PMID:23563313

    Open questions at the time
    • Direct binding interface between COMMD2 and CCDC22 not mapped
    • Whether COMMD2 individually or the full COMMD ring is required for NF-κB inhibition unclear
  3. 2013 Medium

    Demonstration that COMMD2 physically interacts with ENaC expanded the repertoire of ion-channel cargo associated with COMMD proteins, though functional consequences for COMMD2 specifically were not pursued.

    Evidence Co-immunoprecipitation of COMMD2–10 with ENaC subunits in mammalian cells

    PMID:23637203

    Open questions at the time
    • Functional follow-up focused on COMMD3/9, not COMMD2
    • Whether COMMD2 regulates ENaC surface expression not tested
    • Single Co-IP without reciprocal validation for COMMD2 specifically
  4. 2014 High

    Establishing that the CCC complex localizes to early endosomes, connects to the WASH complex, and is required for ATP7A recycling revealed that COMMD2 functions in endosomal cargo trafficking, not solely in NF-κB signaling.

    Evidence Affinity purification, siRNA knockdown with ATP7A trafficking readout, subcellular fractionation

    PMID:25355947

    Open questions at the time
    • Individual contribution of COMMD2 versus other COMMD subunits to trafficking not distinguished
    • Structural basis of CCC–WASH coupling unknown at this point
  5. 2017 High

    Identification of the Commander supercomplex (CCC + Retriever + SNX17) and quantitative surface proteomics showing retromer-independent recycling of >120 cargo proteins defined the major physiological role of COMMD2 as part of a broad endosomal recycling machine.

    Evidence AP-MS, quantitative surface proteomics, siRNA knockdown with integrin recycling assays

    PMID:28892079

    Open questions at the time
    • Whether COMMD2 has cargo-specific roles within the Commander complex not addressed
    • Mechanism by which Commander selects individual cargo unknown
  6. 2023 High

    Cryo-EM and X-ray crystallography resolved the complete Commander structure, placing COMMD2 at a defined position in the hetero-decameric COMMD ring and revealing how the CCDC22–CCDC93 coiled-coil scaffold bridges CCC to Retriever.

    Evidence Cryo-EM, X-ray crystallography, mutagenesis validation

    PMID:37172566

    Open questions at the time
    • Conformational dynamics of the COMMD ring during cargo engagement not captured
    • Whether COMMD2 directly contacts any cargo or adaptor remains unknown
  7. 2022 Medium

    Knockdown of COMMD2 inhibited proliferation and migration in bladder and endometrial cancer cells, with pathway enrichment implicating E2F targets and the G2/M checkpoint, suggesting COMMD2 supports cell-cycle progression in proliferative contexts.

    Evidence siRNA knockdown; CCK-8, EdU, wound healing, and transwell assays in BLCA and UCEC cell lines; GSEA

    PMID:36205192

    Open questions at the time
    • Not independently replicated in a second laboratory
    • Whether proliferation effects are Commander-dependent or reflect a COMMD2-specific moonlighting function is unknown
    • Mechanism linking COMMD2 to E2F/G2M pathways not defined

Open questions

Synthesis pass · forward-looking unresolved questions
  • Whether COMMD2 has non-redundant functions within the hetero-decameric COMMD ring—e.g., cargo-specific recruitment or position-dependent allosteric roles—remains an open question.
  • No single-subunit deletion/replacement experiment for COMMD2 within the intact ring
  • No direct cargo-binding data for COMMD2
  • Tissue-specific in vivo phenotype of COMMD2 loss not characterized

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0060090 molecular adaptor activity 3 GO:0098772 molecular function regulator activity 2
Localization
GO:0005768 endosome 2 GO:0031410 cytoplasmic vesicle 2
Pathway
R-HSA-5653656 Vesicle-mediated transport 3 R-HSA-168256 Immune System 2 R-HSA-9609507 Protein localization 2
Complex memberships
CCC complex (COMMD/CCDC22/CCDC93)Commander complex

Evidence

Reading pass · 9 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2005 COMMD2 was identified as a member of the COMMD protein family (COMMD1-10), all sharing a conserved C-terminal COMM domain. COMMD2 was found to form multimeric complexes with other COMMD family members and to associate with and inhibit NF-κB activity, similar to the founding member MURR1/COMMD1. Biochemical screen for MURR1-associated factors; co-immunoprecipitation; NF-κB reporter assays The Journal of biological chemistry High 15799966
2013 COMMD2 (along with all other COMMD family members COMMD1-10) was shown to bind CCDC22, a coiled-coil domain protein mutated in X-linked intellectual disability. This interaction places COMMD2 within the CCC (COMMD/CCDC22/CCDC93) complex that regulates IκB ubiquitination and NF-κB activation. Co-immunoprecipitation of all COMMD proteins with CCDC22; patient-derived cell analysis; NF-κB activation assays The Journal of clinical investigation High 23563313
2013 COMMD2 (along with COMMD1-10) interacts with the epithelial sodium channel (ENaC). COMMD3 and COMMD9 were selected for detailed study, but the initial screen demonstrated that all COMMD2-10 members physically interact with ENaC. Co-immunoprecipitation pulldown assay of COMMD2-10 with ENaC subunits in mammalian cells American journal of physiology. Renal physiology Medium 23637203
2014 COMMD2 is a component of the CCC (COMMD/CCDC22/CCDC93) complex, which is linked to early endosomes through interactions with CCDC22 and CCDC93, and connects to the WASH complex to regulate endosomal cargo trafficking. Depletion of CCC complex components (including COMMD proteins) impairs endosomal recycling of the copper transporter ATP7A. Affinity purification, co-immunoprecipitation, siRNA knockdown with ATP7A trafficking readout, subcellular fractionation Molecular biology of the cell High 25355947
2017 COMMD2 is a subunit of the Retriever-associated CCC complex, which functions as part of the 'Commander' supercomplex. The CCC complex (containing COMMD1-10, CCDC22, CCDC93) couples to SNX17 and the WASH complex to mediate retromer-independent endosomal recycling of >120 cell-surface proteins including integrins and signaling receptors. Affinity purification-mass spectrometry, co-immunoprecipitation, quantitative surface proteomics, siRNA knockdown with integrin recycling assay Nature cell biology High 28892079
2023 COMMD2 is one of ten COMMD subunits that form a distinctive hetero-decameric ring within the Commander complex. The structural model shows COMMD proteins are stabilized by extensive interactions with CCDC22 and CCDC93, which adopt a coiled-coil structure connecting the CCC and Retriever sub-assemblies. COMMD2 occupies a defined position in this ring structure, enabling mapping of disease-causing mutations. X-ray crystallography, electron cryomicroscopy (cryo-EM), in silico structural prediction, mutagenesis validation Cell High 37172566
2022 RNA interference-mediated suppression of COMMD2 inhibited proliferation and migration of bladder cancer (BLCA) and uterine corpus endometrial carcinoma (UCEC) cells, with gene set enrichment analysis indicating interaction of COMMD2 with E2F targets, G2/M checkpoint, and mitotic spindle pathways. siRNA knockdown; CCK-8 proliferation assay; EdU incorporation; wound healing assay; transwell migration assay; GSEA pathway analysis Cancer medicine Medium 36205192
2015 Large-scale affinity-purification mass spectrometry (BioPlex) identified COMMD2 as part of a protein interaction network in HEK293T cells, detecting co-complex associations with other COMMD family members and components of the CCC complex. High-throughput affinity-purification mass spectrometry (AP-MS) in HEK293T cells Cell Medium 26186194
2021 BioPlex 3.0 confirmed COMMD2 protein-protein interactions at proteome scale across two cell lines (HEK293T and HCT116), validating its co-complex associations with CCC complex components and revealing cell-line-specific interaction partners. Affinity-purification mass spectrometry across 10,128 human proteins in two cell lines Cell Medium 33961781

Source papers

Stage 0 corpus · 39 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2002 Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Proceedings of the National Academy of Sciences of the United States of America 1479 12477932
2015 The BioPlex Network: A Systematic Exploration of the Human Interactome. Cell 1118 26186194
2017 Architecture of the human interactome defines protein communities and disease networks. Nature 1085 28514442
2015 A human interactome in three quantitative dimensions organized by stoichiometries and abundances. Cell 1015 26496610
2020 A reference map of the human binary protein interactome. Nature 849 32296183
2003 Complete sequencing and characterization of 21,243 full-length human cDNAs. Nature genetics 754 14702039
2021 Dual proteome-scale networks reveal cell-specific remodeling of the human interactome. Cell 705 33961781
2004 The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Genome research 438 15489334
2015 A Dynamic Protein Interaction Landscape of the Human Centrosome-Cilium Interface. Cell 433 26638075
2022 OpenCell: Endogenous tagging for the cartography of human cellular organization. Science (New York, N.Y.) 432 35271311
2005 Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Genome research 409 16344560
2015 Panorama of ancient metazoan macromolecular complexes. Nature 407 26344197
1996 Normalization and subtraction: two approaches to facilitate gene discovery. Genome research 401 8889548
2017 Retriever is a multiprotein complex for retromer-independent endosomal cargo recycling. Nature cell biology 281 28892079
2005 COMMD proteins, a novel family of structural and functional homologs of MURR1. The Journal of biological chemistry 233 15799966
2007 hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. Genomics 222 17207965
2014 COMMD1 is linked to the WASH complex and regulates endosomal trafficking of the copper transporter ATP7A. Molecular biology of the cell 186 25355947
2000 Cloning and functional analysis of cDNAs with open reading frames for 300 previously undefined genes expressed in CD34+ hematopoietic stem/progenitor cells. Genome research 161 11042152
2019 A protein-interaction network of interferon-stimulated genes extends the innate immune system landscape. Nature immunology 159 30833792
2011 Interactions of pathological hallmark proteins: tubulin polymerization promoting protein/p25, beta-amyloid, and alpha-synuclein. The Journal of biological chemistry 131 21832049
2017 The human cytoplasmic dynein interactome reveals novel activators of motility. eLife 118 28718761
2020 Receptor-mediated clustering of FIP200 bypasses the role of LC3 lipidation in autophagy. The EMBO journal 100 33226137
2021 SARS-CoV-2 nucleocapsid protein binds host mRNAs and attenuates stress granules to impair host stress response. iScience 90 34901782
2013 CCDC22 deficiency in humans blunts activation of proinflammatory NF-κB signaling. The Journal of clinical investigation 90 23563313
2020 Interactome Mapping Provides a Network of Neurodegenerative Disease Proteins and Uncovers Widespread Protein Aggregation in Affected Brains. Cell reports 79 32814053
2021 Histone deacetylase inhibitors inhibit cervical cancer growth through Parkin acetylation-mediated mitophagy. Acta pharmaceutica Sinica. B 66 35256949
2023 Structure of the endosomal Commander complex linked to Ritscher-Schinzel syndrome. Cell 65 37172566
2022 Scalable multiplex co-fractionation/mass spectrometry platform for accelerated protein interactome discovery. Nature communications 65 35831314
2019 PLEKHA4/kramer Attenuates Dishevelled Ubiquitination to Modulate Wnt and Planar Cell Polarity Signaling. Cell reports 42 31091453
2011 COMMD1 (copper metabolism MURR1 domain-containing protein 1) regulates Cullin RING ligases by preventing CAND1 (Cullin-associated Nedd8-dissociated protein 1) binding. The Journal of biological chemistry 35 21778237
2013 Functional interaction of COMMD3 and COMMD9 with the epithelial sodium channel. American journal of physiology. Renal physiology 27 23637203
2021 Identification of Serum Exosomal MicroRNA Expression Profiling in Menopausal Females with Osteoporosis by High-throughput Sequencing. Current medical science 23 33428145
2022 Multi-omics analysis of the oncogenic value of copper Metabolism-Related protein COMMD2 in human cancers. Cancer medicine 8 36205192
2024 Identification, diversity, and evolution analysis of Commd gene family in Haliotis discus hannai and immune response to biotic and abiotic stresses. Fish & shellfish immunology 2 38575039
2026 Integrated miRNA-proteomic profiling identifies chronic vesicle-trafficking and proteostasis disruptions after mild traumatic brain injury. Experimental neurology 0 41605412
2026 Preliminary study of cyto-impedance: Molecular profiling of functional impedance in motility-promoting treatment of normal cells. Biochemistry and biophysics reports 0 41685087
2025 Identification of shared diagnostic biomarkers and potential co-morbidity mechanisms between primary Sjogren's syndrome and chronic kidney disease. Clinical rheumatology 0 40957961
2025 Screening and regulatory mechanisms of biomarkers related to neddylation in laryngeal squamous cell carcinoma. Frontiers in molecular biosciences 0 41200507
2025 Non-Lethal heat shock induces COMMD gene activation and enhances pathogen defense in Procambarus clarkii. BMC genomics 0 41233790