Affinage

CHMP2A

Charged multivesicular body protein 2a · UniProt O43633

Length
222 aa
Mass
25.1 kDa
Annotated
2026-06-09
20 papers in source corpus 10 papers cited in narrative 10 extracted findings
Cross-family judge vs UniProt: Affinage preferred faithfulness: 7/7 claims corpus-supported (100%)

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

CHMP2A is a core ESCRT-III subunit that drives membrane remodeling and fission as part of the minimal CHMP2A-CHMP3-VPS4 machinery (PMID:36604498). Cryo-EM of membrane-coated filaments shows that CHMP2A and CHMP3 assemble as heterodimers in the open ESCRT-III conformation into helical filaments whose partially positive surface engages the membrane, with N-terminal motifs positioned for membrane interaction and C-terminal VPS4 target sequences facing the tube interior; electrostatic inter-filament contacts permit VPS4-driven sliding, constriction, and tube cleavage (PMID:36604498). CHMP2A itself lacks intrinsic lipid specificity and depends on CHMP3 to bind membranes, and it does not appreciably alter membrane rigidity, distinguishing it from CHMP2B (PMID:33832485). Engagement of the AAA-ATPase VPS4/SKD1 occurs independently of the N-terminal coiled-coil, which is instead required for assembly into ESCRT-III membrane structures (PMID:15173323), and yeast ortholog analysis confirms that spiral formation, lateral heteropolymerization, and VPS4 binding are the minimal functional features of this subunit (PMID:34028356). During cytokinetic abscission CHMP2A acts as a hierarchical organizer of ESCRT-III assembly, with CHMP4B, CHMP3, and CHMP1B depending on it for correct localization (PMID:40928930). Beyond cytokinesis, CHMP2A mediates phagophore/autophagosome closure: its depletion stabilizes intracellular death-inducing signaling complexes on immature autophagosomal membranes and triggers ATG7-dependent Caspase-8 apoptosis (PMID:32807832), and it functions downstream of PTEN to support autophagy flux and protection after ischemia/reperfusion injury (PMID:34789720). In tumor cells CHMP2A restrains antitumor immunity by suppressing NF-κB-driven chemokine secretion and by promoting extracellular-vesicle-mediated NK cell apoptosis, with its loss broadly enhancing immune-cell-mediated tumor control (PMID:35393416, PMID:38702144).

Mechanistic history

Synthesis pass · year-by-year structured walk · 10 steps
  1. 2004 Medium

    Established that mammalian CHMP2A physically engages the VPS4-family ATPase and depends on its N-terminal coiled-coil for assembly onto endosomal membranes, separating its ATPase-binding function from its membrane-targeting function.

    Evidence Yeast two-hybrid, co-IP, and immunofluorescence with the dominant-negative SKD1(E235Q) in mammalian cells

    PMID:15173323

    Open questions at the time
    • Did not resolve the structural basis of the CHMP2A-VPS4 interaction
    • No direct demonstration of membrane fission
  2. 2020 Medium

    Placed CHMP2A in autophagosome closure by showing its loss stabilizes death-inducing complexes on immature membranes and triggers Caspase-8 apoptosis, linking ESCRT-III membrane closure to cell-death control.

    Evidence Conditional knockdown/knockout, ATG7-deletion epistasis, Caspase-8 assays, xenograft model

    PMID:32807832

    Open questions at the time
    • Molecular composition and membrane attachment of iDISCs not fully resolved
    • Mechanism of phagophore sealing by CHMP2A not directly visualized
  3. 2021 High

    Demonstrated that CHMP2A lacks intrinsic lipid specificity and requires CHMP3 for membrane binding, defining its biophysical role relative to the membrane-rigidifying CHMP2B paralog.

    Evidence In vitro reconstitution with purified proteins on biomimetic membranes and membrane mechanics measurements

    PMID:33832485

    Open questions at the time
    • Did not establish the filament architecture underlying binding
    • Physiological membrane substrate composition not addressed
  4. 2021 Medium

    Reduced the subunit to three minimal functional requirements—spiral formation, lateral heteropolymerization, and VPS4 binding—using the yeast ortholog, defining the conserved logic of ESCRT-III function.

    Evidence Mutagenesis, genetic complementation, and engineered selection in S. cerevisiae Vps2

    PMID:34028356

    Open questions at the time
    • Inferred from yeast ortholog rather than human CHMP2A
    • Did not test membrane fission directly
  5. 2021 Medium

    Positioned CHMP2A downstream of PTEN in autophagy regulation, showing CHMP2A is required for PTEN-mediated autophagy flux and tissue protection after ischemia/reperfusion.

    Evidence PTEN transgenic mice, proteomics, CHMP2A siRNA rescue, autophagy flux assays

    PMID:34789720

    Open questions at the time
    • Mechanism by which PTEN upregulates CHMP2A unclear
    • Direct role of CHMP2A in autolysosome formation not visualized
  6. 2022 Medium

    Identified CHMP2A as a tumor immune-evasion factor that suppresses NF-κB-driven chemokine secretion and drives NK-cell-killing via MICA/B- and TRAIL-bearing extracellular vesicles.

    Evidence Genome-wide CRISPR screen, CHMP2A KO, NF-κB analysis, EV characterization, NK killing assays, xenografts

    PMID:35393416

    Open questions at the time
    • How ESCRT-III membrane activity connects mechanistically to NF-κB is unresolved
    • EV cargo loading mechanism not defined
  7. 2023 High

    Provided the atomic structural mechanism: CHMP2A-CHMP3 open-conformation heterodimers form helical membrane-coating filaments cleaved by VPS4, establishing CHMP2A-CHMP3-VPS4 as a minimal fission machine.

    Evidence Cryo-EM at 3.3/3.6 Å, high-speed AFM, fluorescence microscopy

    PMID:36604498

    Open questions at the time
    • In-cell relevance of the reconstituted geometry not tested
    • Stoichiometry with other ESCRT-III subunits in physiological filaments unresolved
  8. 2024 Medium

    Extended the immune-evasion role in vivo, showing CHMP2A loss broadens antitumor immunity (more T and NK cells, fewer MDSCs) and confirmed the effect is immune-dependent.

    Evidence CRISPR KO, syngeneic immunocompetent vs immunodeficient orthotopic transplantation, immune profiling

    PMID:38702144

    Open questions at the time
    • Cell-intrinsic mechanism altering MDSC and T-cell recruitment not defined
    • Whether effect is EV-dependent in vivo not isolated
  9. 2024 Low

    Began mapping CHMP2A lipid environment during division by capturing associated lipid species in dividing cells.

    Evidence Lipid-trap mass spectrometry (GFP-CHMP2A IP plus lipidomics) in dividing HeLa cells (preprint)

    PMID:bio_10.1101_2024.12.13.627510

    Open questions at the time
    • Single method, preprint, no functional validation of specific lipid interactions
    • Direct binding vs co-purification not distinguished
  10. 2025 Medium

    Defined CHMP2A as a hierarchical organizer of abscission, with downstream ESCRT-III subunits depending on it for correct localization while abscission is delayed rather than abolished.

    Evidence Live imaging, SIM, correlative light-electron microscopy in CHMP2A KO cells

    PMID:40928930

    Open questions at the time
    • Redundancy compensating for CHMP2A loss not identified
    • Order of subunit recruitment relative to VPS4 not fully resolved

Open questions

Synthesis pass · forward-looking unresolved questions
  • How CHMP2A's membrane-fission activity is mechanistically coupled to its signaling roles (NF-κB modulation, EV-mediated immune suppression, PTEN-dependent autophagy) remains unresolved.
  • No direct link established between filament/fission activity and NF-κB control
  • Mechanism of immune-relevant EV biogenesis by CHMP2A undefined

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0005198 structural molecule activity 3 GO:0008289 lipid binding 1
Localization
GO:0005886 plasma membrane 2 GO:0005768 endosome 1
Pathway
R-HSA-168256 Immune System 2 R-HSA-9612973 Autophagy 2 R-HSA-1640170 Cell Cycle 1 R-HSA-5653656 Vesicle-mediated transport 1
Complex memberships
ESCRT-III

Evidence

Reading pass · 10 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2023 Cryo-EM structures of membrane-coated CHMP2A-CHMP3 filaments (3.3 and 3.6 Å resolution) reveal helical filaments assembled by CHMP2A-CHMP3 heterodimers in the open ESCRT-III conformation, generating a partially positive-charged membrane interaction surface, positioning N-terminal motifs for membrane interaction and C-terminal VPS4 target sequences toward the tube interior; inter-filament interactions are electrostatic, facilitating filament sliding upon VPS4-mediated remodeling. VPS4 can constrict and cleave CHMP2A-CHMP3 membrane tubes, establishing CHMP2A-CHMP3-VPS4 as a minimal membrane fission machinery. Cryo-EM structure determination, fluorescence microscopy, high-speed atomic force microscopy Nature structural & molecular biology High 36604498
2021 CHMP2A does not display lipid specificity and requires CHMP3 for binding significantly to membranes, in contrast to CHMP2B which binds independently and is enhanced by PI(4,5)P2. CHMP2A (+CHMP3) binds homogeneously on membranes but has no significant effect on membrane rigidity, whereas CHMP2B strongly rigidifies membranes. In vitro binding assays with purified proteins on biomimetic membranes, membrane mechanics measurements BMC biology High 33832485
2004 Mammalian CHMP2A (mVps2) interacts with the AAA-ATPase SKD1/VPS4B and localizes to an aberrant endosomal compartment induced by ATPase-deficient SKD1(E235Q). The N-terminal coiled-coil region of mVps2 is required for formation of the E235Q compartment but not for binding to SKD1. Yeast two-hybrid screening, co-immunoprecipitation, immunofluorescence localization with SKD1(E235Q) dominant-negative Journal of cell science Medium 15173323
2021 In yeast, the ESCRT-III subunit Vps2 (ortholog of CHMP2A) requires three minimal features for function: spiral formation, lateral association of spirals through heteropolymerization, and binding to the AAA+ ATPase Vps4. Mutations in the helix-1 region of Vps2 can functionally replace Vps24 in S. cerevisiae, demonstrating functional interchangeability through shared structural features. Mutagenesis, genetic complementation, engineering and genetic selection in S. cerevisiae eLife Medium 34028356
2020 Conditional depletion of CHMP2A (an ESCRT-III component required for phagophore/autophagosome closure) stabilizes intracellular death-inducing signaling complexes (iDISCs) on immature autophagosomal membranes and induces Caspase-8-dependent apoptosis. This Caspase-8 activation is blocked by ATG7 deletion, placing CHMP2A upstream of autophagosome-based iDISC assembly. Conditional knockdown/knockout, genetic epistasis (ATG7 deletion), Caspase-8 activity assays, in vivo xenograft model Cell death and differentiation Medium 32807832
2022 Deletion of CHMP2A activates NF-κB in tumor cells to mediate increased chemokine secretion promoting NK cell migration. In HNSCC cells, CHMP2A mediates tumor resistance to NK cells via secretion of extracellular vesicles (EVs) expressing MICA/B and TRAIL, which induce apoptosis of NK cells to inhibit their antitumor activity. CRISPR-Cas9 whole-genome screen, CHMP2A knockout, NF-κB pathway analysis, EV characterization, NK cell killing assays, xenograft mouse model Nature communications Medium 35393416
2025 CHMP2A knockout causes significant delay (but not failure) in cytokinetic abscission, accompanied by progressive organization defects in CHMP4B, CHMP3, and CHMP1B at the abscission site while IST1 and CHMP2B are minimally disrupted. This demonstrates that CHMP2A acts as a hierarchical organizer of ESCRT-III subunit assembly during abscission, with downstream subunits (CHMP4B, CHMP3, CHMP1B) depending on CHMP2A for correct localization. Live cell imaging, structured illumination microscopy (SIM), correlative light-electron microscopy, CHMP2A knockout Molecular biology of the cell Medium 40928930
2024 CHMP2A KO in immunocompetent mouse head and neck squamous cell carcinoma model leads to increased CD4+ T cells, CD8+ T cells, and NK cells, and fewer myeloid-derived suppressor cells (MDSCs) in the tumor microenvironment, demonstrating that CHMP2A regulates broad immune cell-mediated antitumor activity beyond NK cells alone. No difference in tumor development was observed in immunodeficient mice, confirming the effect is immune-mediated. CRISPR/Cas9 knockout, orthotopic transplantation in syngeneic immunocompetent and immunodeficient mice, immune cell profiling Journal for immunotherapy of cancer Medium 38702144
2021 PTEN overexpression upregulates CHMP2A, and the beneficial effect of PTEN on autophagy flux and cell protection after ischemia/reperfusion injury is abolished when CHMP2A is silenced, placing CHMP2A downstream of PTEN in a pathway regulating phagosome closure and autolysosome formation. PTEN transgenic mouse model, mass spectrometry proteomics, CHMP2A siRNA knockdown, autophagy flux assays Cell death & disease Medium 34789720
2024 CHMP2A associates with specific lipid species in dividing HeLa cells as detected by lipid-trap mass spectrometry (immunoprecipitation of GFP-CHMP2A followed by lipidomics), identifying lipid-protein interactions during cytokinesis. Lipid-trap mass spectrometry (GFP immunoprecipitation coupled to lipidomic analysis) in dividing HeLa cells bioRxivpreprint Low bio_10.1101_2024.12.13.627510

Source papers

Stage 0 corpus · 20 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
1995 In vitro establishment and characterization of two acquired immunodeficiency syndrome-related lymphoma cell lines (BC-1 and BC-2) containing Kaposi's sarcoma-associated herpesvirus-like (KSHV) DNA sequences. Blood 511 7670109
2022 CHMP2A regulates tumor sensitivity to natural killer cell-mediated cytotoxicity. Nature communications 56 35393416
2023 Structural basis of CHMP2A-CHMP3 ESCRT-III polymer assembly and membrane cleavage. Nature structural & molecular biology 50 36604498
2004 Mammalian class E Vps proteins, SBP1 and mVps2/CHMP2A, interact with and regulate the function of an AAA-ATPase SKD1/Vps4B. Journal of cell science 43 15173323
1995 (+)-cis-4,5,7a,8,9,10,11,11a-octahydro-7H-10-methylindolo[1,7- bc][2,6]-naphthyridine: a 5-HT2C/2B receptor antagonist with low 5-HT2A receptor affinity. Journal of medicinal chemistry 43 7837236
2021 The ESCRT-III isoforms CHMP2A and CHMP2B display different effects on membranes upon polymerization. BMC biology 30 33832485
2020 Targeting the ESCRT-III component CHMP2A for noncanonical Caspase-8 activation on autophagosomal membranes. Cell death and differentiation 24 32807832
2021 The balance between AIM2-associated inflammation and autophagy: the role of CHMP2A in brain injury after cardiac arrest. Journal of neuroinflammation 21 34740380
2021 Design principles of the ESCRT-III Vps24-Vps2 module. eLife 19 34028356
2021 PTEN alleviates maladaptive repair of renal tubular epithelial cells by restoring CHMP2A-mediated phagosome closure. Cell death & disease 18 34789720
2021 Coding Mutations in Vacuolar Protein-Sorting 4 AAA+ ATPase Endosomal Sorting Complexes Required for Transport Protein Homologs Underlie bc-2 and New bc-4 Gene Conferring Resistance to Bean Common Mosaic Virus in Common Bean. Frontiers in plant science 15 34966401
2018 Recessive Resistance to Bean common mosaic virus Conferred by the bc-1 and bc-2 Genes in Common Bean (Phaseolus vulgaris) Affects Long-Distance Movement of the Virus. Phytopathology 13 29648948
2020 Genome-wide identification and integrated analysis of lncRNAs in rice backcross introgression lines (BC2F12). BMC plant biology 11 32600330
1999 Characterization of intertypic recombinants of the Epstein-Barr virus from the body-cavity-based lymphomas cell lines BC-1 and BC-2. Virology 9 10562498
2000 Epstein-Barr virus recombinants from BC-1 and BC-2 can immortalize human primary B lymphocytes with different levels of efficiency and in the absence of coinfection by Kaposi's sarcoma-associated herpesvirus. Journal of virology 6 10623735
2024 CHMP2A regulates broad immune cell-mediated antitumor activity in an immunocompetent in vivo head and neck squamous cell carcinoma model. Journal for immunotherapy of cancer 4 38702144
2023 Identification of salt stress-tolerant candidate genes in the BC2F2 population at the seedling stages of G. hirsutum and G. darwinii using NGS-based bulked segregant analysis. Frontiers in plant science 2 37465381
2025 Loss of CHMP2A implicates an ordered assembly of ESCRT-III proteins during cytokinetic abscission. Molecular biology of the cell 1 40928930
2017 Genetic analysis and identification of SSR markers associated with rice blast disease in a BC2F1 backcross population. Genetics and molecular research : GMR 1 28128411
2026 Expression heterosis in the abaca (Musa textilis Née) BC2 hybrid, Dioscoro 1. BMC genomics 0 41514251

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